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Michal Linial
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Research Profile (preview)
Concepts & Ideas
Chemicals & Drugs
Procedures
Genes & Molecular Sequences
Occupations
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Anatomy
Physiology
Living Beings
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Network (preview)
9
Linial, Nathan
7
Kaplan, Noam
7
Parnas, D
7
Portugaly, Elon
6
Sasson, Ori
5
Yona, Golan
5
Bledi, Yaniv
4
Domb, Abraham
4
Fromer, Menachem
3
Feinstein, Naomi
3
Azzam, Tony
3
Horn, David
3
Inberg, Alex
2
Ilouz, N
2
Lazarovici, Philip
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All Publications
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2009: Naamati Guy; Askenazi Manor; Linial Michal
ClanTox: a classifier of short animal toxins.
Nucleic acids research 2009;37(Web Server issue):W363-8.
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2009: Bahir Iris; Fromer Menachem; Prat Yosef; Linial Michal
Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences.
Molecular systems biology 2009;5():311.
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2008: Loewenstein Yaniv; Linial Michal
Connect the dots: exposing hidden protein family connections from the entire sequence tree.
Bioinformatics (Oxford, England) 2008;24(16):i193-9.
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2008: Loewenstein Yaniv; Portugaly Elon; Fromer Menachem; Linial Michal
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
Bioinformatics (Oxford, England) 2008;24(13):i41-9.
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2008: Linial Michal; Mesirov Jill P; Morrison McKay B J; Rost Burkhard
ISMB 2008 Toronto.
PLoS computational biology 2008;4(6):e1000094.
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2008: Gielchinsky Yuval; Bogoch Yoel; Rechavi Gideon; Jacob-Hirsch Jasmine; Amariglio Ninette; Shveiky David; Linial Michal; Laufer Neri
Gene expression in women conceiving spontaneously over the age of 45 years.
Fertility and sterility 2008;89(6):1641-50.
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2008: Bogoch Yoel; Linial Michal
Coordinated expression of cytoskeleton regulating genes in the accelerated neurite outgrowth of P19 embryonic carcinoma cells.
Experimental cell research 2008;314(4):677-90.
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2008: Varshavsky Roy; Horn David; Linial Michal
Global considerations in hierarchical clustering reveal meaningful patterns in data.
PloS one 2008;3(5):e2247.
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2008: Yanay Chava; Morpurgo Noa; Linial Michal
Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle.
Genome biology 2008;9(2):R27.
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2007: Varshavsky Roy; Gottlieb Assaf; Horn David; Linial Michal
Unsupervised feature selection under perturbations: meeting the challenges of biological data.
Bioinformatics (Oxford, England) 2007;23(24):3343-9.
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2007: Kaplan Noam; Morpurgo Noa; Linial Michal
Novel families of toxin-like peptides in insects and mammals: a computational approach.
Journal of molecular biology 2007;369(2):553-66.
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2007: Bogoch Y; Biala Y N; Linial M; Weinstock M
Anxiety induced by prenatal stress is associated with suppression of hippocampal genes involved in synaptic function.
Journal of neurochemistry 2007;101(4):1018-30.
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2007: Inberg Alex; Bogoch Yoel; Bledi Yaniv; Linial Michal
Cellular processes underlying maturation of P19 neurons: Changes in protein folding regimen and cytoskeleton organization.
Proteomics 2007;7(6):910-20.
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2007: Portugaly Elon; Linial Nathan; Linial Michal
EVEREST: a collection of evolutionary conserved protein domains.
Nucleic acids research 2007;35(Database issue):D241-6.
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2006: Kaplan Noam; Linial Michal
ProtoBee: hierarchical classification and annotation of the honey bee proteome.
Genome research 2006;16(11):1431-8.
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2006: Krispin Alon; Bledi Yaniv; Atallah Mizhir; Trahtemberg Uriel; Verbovetski Inna; Nahari Efrat; Zelig Orly; Linial Michal; Mevorach Dror
Apoptotic cell thrombospondin-1 and heparin-binding domain lead to dendritic-cell phagocytic and tolerizing states.
Blood 2006;108(10):3580-9.
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2006: Varshavsky Roy; Gottlieb Assaf; Linial Michal; Horn David
Novel unsupervised feature filtering of biological data.
Bioinformatics (Oxford, England) 2006;22(14):e507-13.
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2006: Sasson Ori; Kaplan Noam; Linial Michal
Functional annotation prediction: all for one and one for all.
Protein science : a publication of the Protein Society 2006;15(6):1557-62.
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2006: Bahir Iris; Linial Michal
Functional grouping based on signatures in protein termini.
Proteins 2006;63(4):996-1004.
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2006: Schueler-Furman Ora; Glick Eitan; Segovia José; Linial Michal
Is GAS1 a co-receptor for the GDNF family of ligands?
Trends in pharmacological sciences 2006;27(2):72-7.
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2006: Portugaly Elon; Harel Amir; Linial Nathan; Linial Michal
EVEREST: automatic identification and classification of protein domains in all protein sequences.
BMC bioinformatics 2006;7():277.
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2006: Linial Michal
The secrets of a functional synapse--from a computational and experimental viewpoint.
BMC bioinformatics 2006;7 Suppl 1():S6.
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2005: Yudovin-Farber Ira; Yanay Chava; Azzam Tony; Linial Michal; Domb Abraham J
Quaternary ammonium polysaccharides for gene delivery.
Bioconjugate chemistry 2005;16(5):1196-203.
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2005: Sasson Ori; Linial Michal
ProTarget: automatic prediction of protein structure novelty.
Nucleic acids research 2005;33(Web Server issue):W81-4.
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2005: Bahir Iris; Linial Michal
ProTeus: identifying signatures in protein termini.
Nucleic acids research 2005;33(Web Server issue):W277-80.
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2005: Sadka Tali; Linial Michal
Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i378-86.
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2005: Kifer Ilona; Sasson Ori; Linial Michal
Predicting fold novelty based on ProtoNet hierarchical classification.
Bioinformatics (Oxford, England) 2005;21(7):1020-7.
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2005: Kaplan Noam; Sasson Ori; Inbar Uri; Friedlich Moriah; Fromer Menachem; Fleischer Hillel; Portugaly Elon; Linial Nathan; Linial Michal
ProtoNet 4.0: a hierarchical classification of one million protein sequences.
Nucleic acids research 2005;33(Database issue):D216-8.
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2005: Kaplan Noam; Linial Michal
Automatic detection of false annotations via binary property clustering.
BMC bioinformatics 2005;6():46.
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2004: Inberg Alex; Linial Michal
Evolutional insights on uncharacterized SARS coronavirus genes.
FEBS letters 2004;577(1-2):159-64.
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2004: Shachar Ori; Linial Michal
A robust method to detect structural and functional remote homologues.
Proteins 2004;57(3):531-8.
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2004: Azzam Tony; Eliyahu Hagit; Makovitzki Arik; Linial Michal; Domb Abraham J
Hydrophobized dextran-spermine conjugate as potential vector for in vitro gene transfection.
Journal of controlled release : official journal of the Controlled Release Society 2004;96(2):309-23.
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2004: Kaplan Noam; Friedlich Moriah; Fromer Menachem; Linial Michal
A functional hierarchical organization of the protein sequence space.
BMC bioinformatics 2004;5():196.
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2003: Bledi Yaniv; Inberg Alex; Linial Michal
PROCEED: A proteomic method for analysing plasma membrane proteins in living mammalian cells.
Briefings in functional genomics & proteomics 2003;2(3):254-65.
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2003: Kaplan Noam; Vaaknin Avishay; Linial Michal
PANDORA: keyword-based analysis of protein sets by integration of annotation sources.
Nucleic acids research 2003;31(19):5617-26.
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2003: Michaelevski Izhak; Chikvashvili Dodo; Tsuk Sharon; Singer-Lahat Dafna; Kang Youhou; Linial Michal; Gaisano Herbert Y; Fili Oded; Lotan Ilana
Direct interaction of target SNAREs with the Kv2.1 channel. Modal regulation of channel activation and inactivation gating.
The Journal of biological chemistry 2003;278(36):34320-30.
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2003: Linial Michal
How incorrect annotations evolve--the case of short ORFs.
Trends in biotechnology 2003;21(7):298-300.
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2003: Sasson Ori; Vaaknin Avishay; Fleischer Hillel; Portugaly Elon; Bilu Yonatan; Linial Nathan; Linial Michal
ProtoNet: hierarchical classification of the protein space.
Nucleic acids research 2003;31(1):348-52.
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2003: Linial Michal
Fishing with (proto)net-a principled approach to protein target selection.
Comparative and functional genomics 2003;4(5):542-8.
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2002: Portugaly Elon; Kifer Ilona; Linial Michal
Selecting targets for structural determination by navigating in a graph of protein families.
Bioinformatics (Oxford, England) 2002;18(7):899-907.
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2002: Bloch-Shilderman Eugenia; Abu-Raya Saleh; Trembovler Victoria; Boschwitz Hassia; Gruzman Arie; Linial Michal; Lazarovici Philip
Pardaxin stimulation of phospholipases A2 and their involvement in exocytosis in PC-12 cells.
The Journal of pharmacology and experimental therapeutics 2002;301(3):953-62.
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2002: Azzam Tony; Eliyahu Hagit; Shapira Libi; Linial Michal; Barenholz Yechezkel; Domb Abraham J
Polysaccharide-oligoamine based conjugates for gene delivery.
Journal of medicinal chemistry 2002;45(9):1817-24.
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2002: Sasson Ori; Linial Nathan; Linial Michal
The metric space of proteins-comparative study of clustering algorithms.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S14-21.
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2002: Bilu Yonatan; Linial Michal
The advantage of functional prediction based on clustering of yeast genes and its correlation with non-sequence based classifications.
Journal of computational biology : a journal of computational molecular cell biology 2002;9(2):193-210.
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2001: Fili O; Michaelevski I; Bledi Y; Chikvashvili D; Singer-Lahat D; Boshwitz H; Linial M; Lotan I
Direct interaction of a brain voltage-gated K+ channel with syntaxin 1A: functional impact on channel gating.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2001;21(6):1964-74.
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2001: Bloch-Shilderman E; Jiang H; Abu-Raya S; Linial M; Lazarovici P
Involvement of extracellular signal-regulated kinase (ERK) in pardaxin-induced dopamine release from PC12 cells.
The Journal of pharmacology and experimental therapeutics 2001;296(3):704-11.
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2000: Bledi Y; Domb A J; Linial M
Culturing neuronal cells on surfaces coated by a novel polyethyleneimine-based polymer.
Brain research. Brain research protocols 2000;5(3):282-9.
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2000: Portugaly E; Linial M
Estimating the probability for a protein to have a new fold: A statistical computational model.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(10):5161-6.
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2000: Yona G; Linial N; Linial M
ProtoMap: automatic classification of protein sequences and hierarchy of protein families.
Nucleic acids research 2000;28(1):49-55.
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2000: Friedman N; Linial M; Nachman I; Pe'er D
Using Bayesian networks to analyze expression data.
Journal of computational biology : a journal of computational molecular cell biology 2000;7(3-4):601-20.
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2000: Linial M; Yona G
Methodologies for target selection in structural genomics.
Progress in biophysics and molecular biology 2000;73(5):297-320.
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1999: Yona G; Linial N; Linial M
ProtoMap: automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space.
Proteins 1999;37(3):360-78.
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1999: Ilouz N; Branski L; Parnis J; Parnas H; Linial M
Depolarization affects the binding properties of muscarinic acetylcholine receptors and their interaction with proteins of the exocytic apparatus.
The Journal of biological chemistry 1999;274(41):29519-28.
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1999: Peleg G; Lewis A; Linial M; Loew L M
Nonlinear optical measurement of membrane potential around single molecules at selected cellular sites.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(12):6700-4.
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1998: Baram D; Linial M; Mekori Y A; Sagi-Eisenberg R
Ca2+-dependent exocytosis in mast cells is stimulated by the Ca2+ sensor, synaptotagmin I.
Journal of immunology (Baltimore, Md. : 1950) 1998;161(10):5120-3.
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1998: Parnas D; Linial M
Highly sensitive ELISA-based assay for quantifying protein levels in neuronal cultures.
Brain research. Brain research protocols 1998;2(4):333-8.
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1998: Parnas D; Heldman E; Branski L; Feinstein N; Linial M
Expression and localization of muscarinic receptors in P19-derived neurons.
Journal of molecular neuroscience : MN 1998;10(1):17-29.
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1998: Yona G; Linial N; Tishby N; Linial M
A map of the protein space--an automatic hierarchical classification of all protein sequences.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1998;6():212-21.
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1997: Linial M
SNARE proteins--why so many, why so few?
Journal of neurochemistry 1997;69(5):1781-92.
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1997: Linial M; Ilouz N; Parnas H
Voltage-dependent interaction between the muscarinic ACh receptor and proteins of the exocytic machinery.
The Journal of physiology 1997;504 ( Pt 2)():251-8.
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1997: Parnas D; Linial M
Acceleration of neuronal maturation of P19 cells by increasing culture density.
Brain research. Developmental brain research 1997;101(1-2):115-24.
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1997: Benhar M; Boschwitz H; Linial M
Differential expression pattern of Rab-GDI isoforms during the parotid gland secretion cycle.
Experimental cell research 1997;233(1):207-15.
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1997: Levius O; Feinstein N; Linial M
Expression and localization of synaptotagmin I in rat parotid gland.
European journal of cell biology 1997;73(1):81-92.
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1997: Linial M; Linial N; Tishby N; Yona G
Global self-organization of all known protein sequences reveals inherent biological signatures.
Journal of molecular biology 1997;268(2):539-56.
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1997: Parnas D; Linial M
Culture density regulates both the cholinergic phenotype and the expression of the CNTF receptor in P19 neurons.
Journal of molecular neuroscience : MN 1997;8(2):115-30.
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1996: Linial M; Parnas D
Deciphering neuronal secretion: tools of the trade.
Biochimica et biophysica acta 1996;1286(2):117-52.
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1995: Parnas D; Linial M
Cholinergic properties of neurons differentiated from an embryonal carcinoma cell-line (P19).
International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience 1995;13(7):767-81.
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1995: Linial M
Bacterial neurotoxins--a thousand years later.
Israel journal of medical sciences 1995;31(10):591-5.
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1995: Linial M; Ilouz N; Feinstein N
alpha-latrotoxin is a potent inducer of neurotransmitter release in Torpedo electric organ--functional and morphological characterization.
The European journal of neuroscience 1995;7(4):742-52.
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1995: Kistner U; Garner C C; Linial M
Nucleotide binding by the synapse associated protein SAP90.
FEBS letters 1995;359(2-3):159-63.
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1995: Linial M; Levius O; Ilouz N; Parnas D
The effect of calcium levels on synaptic proteins. A study on VAT-1 from Torpedo.
Journal of physiology, Paris 1995;89(2):103-12.
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1994: Linial M
Proline clustering in proteins from synaptic vesicles.
Neuroreport 1994;5(16):2009-15.
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1993: Levius O; Linial M
VAT-1 from Torpedo synaptic vesicles is a calcium binding protein: a study in bacterial expression systems.
Cellular and molecular neurobiology 1993;13(5):483-92.
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1993: Linial M
VAT-1 from Torpedo electric organ forms a high-molecular-mass protein complex within the synaptic vesicle membrane.
European journal of biochemistry / FEBS 1993;216(1):189-97.
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1993: Linial M; Levius O
The protein VAT-1 from Torpedo electric organ exhibits an ATPase activity.
Neuroscience letters 1993;152(1-2):155-7.
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1993: Linial M; Levius O
VAT-1 from Torpedo is a membranous homologue of zeta crystallin.
FEBS letters 1993;315(1):91-4.
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1988: Linial M; Shlomai J
Bent DNA structures associated with several origins of replication are recognized by a unique enzyme from trypanosomatids.
Nucleic acids research 1988;16(14A):6477-92.
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1988: Linial M; Shlomai J
A unique endonuclease from Crithidia fasciculata which recognizes a bend in the DNA helix. Specificity of the cleavage reaction.
The Journal of biological chemistry 1988;263(1):290-7.
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1987: Linial M; Shlomai J
Sequence-directed bent DNA helix is the specific binding site for Crithidia fasciculata nicking enzyme.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(23):8205-9.
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1987: Linial M; Shlomai J
The sequence-directed bent structure in kinetoplast DNA is recognized by an enzyme from Crithidia fasciculata.
The Journal of biological chemistry 1987;262(31):15194-201.
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1986: Shlomai J; Linial M
A nicking enzyme from trypanosomatids which specifically affects the topological linking of duplex DNA circles. Purification and characterization.
The Journal of biological chemistry 1986;261(34):16219-25.
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