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Burkhard Linke

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Genes & Molecular Sequences

Bacterial Genomes

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Susanne Schneiker-Bekel; Michael Stiens; Frank-Jörg Vorhölter; Stefan Weidner; Daniel Wibberg; Thomas Bekel; Jochen Blom; Alexander Goesmann; Burkhard Linke; Heiko Neuweger; Alfred Pühler; Andreas Schlüter
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
Jessica Schneider; Andreas Tauch; Jochen Blom; Karina Brinkrolf; Sebastian Jaenicke; Burkhard Linke; Heiko Neuweger; Alexander Goesmann
RAPYD--rapid annotation platform for yeast data.
Burkhard Linke; Robert Giegerich; Alexander Goesmann
Conveyor: a workflow engine for bioinformatic analyses.

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All Publications

2011: Susanne Schneiker-Bekel; Michael Stiens; Frank-Jörg Vorhölter; Stefan Weidner; Daniel Wibberg; Thomas Bekel; Jochen Blom; Alexander Goesmann; Burkhard Linke; Heiko Neuweger; Alfred Pühler; Andreas Schlüter
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
Journal of biotechnology 2011;155(1):20-33.
2011: Jessica Schneider; Andreas Tauch; Jochen Blom; Karina Brinkrolf; Sebastian Jaenicke; Burkhard Linke; Heiko Neuweger; Alexander Goesmann
RAPYD--rapid annotation platform for yeast data.
Journal of biotechnology 2011;155(1):118-26.
2011: Burkhard Linke; Robert Giegerich; Alexander Goesmann
Conveyor: a workflow engine for bioinformatic analyses.
Bioinformatics (Oxford, England) 2011;27(7):903-11.
2010: Eva Trost; Susanne Götker; Jessica Schneider; Susanne Schneiker-Bekel; Rafael Szczepanowski; Alexandra Tilker; Prisca Viehoever; Walter Arnold; Thomas Bekel; Jochen Blom; Karl-Heinz Gartemann; Burkhard Linke; Alexander Goesmann; Alfred Pühler; Sanjay K Shukla; Andreas Tauch
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
BMC genomics 2010;11():91.
2009: Rafael Szczepanowski; Burkhard Linke; Irene Krahn; Karl-Heinz Gartemann; Tim Gützkow; Wolfgang Eichler; Alfred Pühler; Andreas Schlüter
Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics.
Microbiology (Reading, England) 2009;155(Pt 7):2306-19.
2009: Michael Dondrup; Stefan Albaum; Thasso Griebel; Kolja Henckel; Sebastian Jünemann; Tim Kahlke; Christiane K Kleindt; Helge Küster; Burkhard Linke; Dominik Mertens; Virginie Mittard-Runte; Heiko Neuweger; Kai J Runte; Andreas Tauch; Felix Tille; Alfred Pühler; Alexander Goesmann
EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.
BMC bioinformatics 2009;10():50.
2008: Frank-Jörg Vorhölter; Susanne Schneiker; Alexander Goesmann; Lutz Krause; Thomas Bekel; Olaf Kaiser; Burkhard Linke; Thomas Patschkowski; Christian Rückert; Joachim Schmid; Vishaldeep Kaur Sidhu; Volker Sieber; Andreas Tauch; Steven Alexander Watt; Bernd Weisshaar; Anke Becker; Karsten Niehaus; Alfred Pühler
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Journal of biotechnology 2008;134(1-2):33-45.
2008: Karl-Heinz Gartemann; Birte Abt; Thomas Bekel; Annette Burger; Jutta Engemann; Monika Flügel; Lars Gaigalat; Alexander Goesmann; Ines Gräfen; Jörn Kalinowski; Olaf Kaup; Oliver Kirchner; Lutz Krause; Burkhard Linke; Alice C McHardy; Folker Meyer; Sandra Pohle; Christian Rückert; Susanne Schneiker; Eva-Maria Zellermann; Alfred Pühler; Rudolf Eichenlaub; Olaf Kaiser; Daniela Bartels
The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity.
Journal of bacteriology 2008;190(6):2138-49.
2007: Christine Meisinger-Henschel; Michaela Schmidt; Susanne Lukassen; Burkhard Linke; Lutz Krause; Sebastian Konietzny; Alexander Goesmann; Paul Howley; Paul Chaplin; Mark Suter; Jürgen Hausmann
Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara.
The Journal of general virology 2007;88(Pt 12):3249-59.
2007: Miet Martens; Stefan Weidner; Burkhard Linke; Paul De Vos; Monique Gillis; Anne Willems
A prototype taxonomic microarray targeting the rpsA housekeeping gene permits species identification within the rhizobial genus Ensifer.
Systematic and applied microbiology 2007;30(5):390-400.
2006: Andrea Krause; Adarsh Ramakumar; Daniela Bartels; Federico Battistoni; Thomas Bekel; Jens Boch; Melanie Böhm; Frauke Friedrich; Thomas Hurek; Lutz Krause; Burkhard Linke; Alice C McHardy; Abhijit Sarkar; Susanne Schneiker; Arshad Ali Syed; Rudolf Thauer; Frank-Jörg Vorhölter; Stefan Weidner; Alfred Pühler; Barbara Reinhold-Hurek; Olaf Kaiser; Alexander Goesmann
Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.
Nature biotechnology 2006;24(11):1385-91.
2006: Susanne Schneiker; Vítor A P Martins Dos Santos; Daniela Bartels; Thomas Bekel; Martina Brecht; Jens Buhrmester; Tatyana N Chernikova; Renata Denaro; Manuel Ferrer; Christoph Gertler; Alexander Goesmann; Olga V Golyshina; Filip Kaminski; Amit N Khachane; Siegmund Lang; Burkhard Linke; Alice C McHardy; Folker Meyer; Taras Nechitaylo; Alfred Pühler; Daniela Regenhardt; Oliver Rupp; Julia S Sabirova; Werner Selbitschka; Michail M Yakimov; Kenneth N Timmis; Frank-Jörg Vorhölter; Stefan Weidner; Olaf Kaiser; Peter N Golyshin
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Nature biotechnology 2006;24(8):997-1004.
2006: Burkhard Linke; Alice C McHardy; Heiko Neuweger; Lutz Krause; Folker Meyer
REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Applied bioinformatics 2006;5(3):193-8.
2005: Frank Thieme; Ralf Koebnik; Thomas Bekel; Carolin Berger; Jens Boch; Daniela Büttner; Camila Caldana; Lars Gaigalat; Alexander Goesmann; Sabine Kay; Oliver Kirchner; Christa Lanz; Burkhard Linke; Alice C McHardy; Folker Meyer; Gerhard Mittenhuber; Dietrich H Nies; Ulla Niesbach-Klösgen; Thomas Patschkowski; Christian Rückert; Oliver Rupp; Susanne Schneiker; Stephan C Schuster; Frank-Jörg Vorhölter; Ernst Weber; Alfred Pühler; Ulla Bonas; Daniela Bartels; Olaf Kaiser
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
Journal of bacteriology 2005;187(21):7254-66.
2005: Alexander Goesmann; Burkhard Linke; Daniela Bartels; Michael Dondrup; Lutz Krause; H Neuweger; S Oehm; T Paczian; Andreas Wilke; Folker Meyer
BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser.
Nucleic acids research 2005;33(Web Server issue):W710-6.
2004: Rafael Szczepanowski; Irene Krahn; Burkhard Linke; Alexander Goesmann; Alfred Pühler; Andreas Schlüter
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.
Microbiology (Reading, England) 2004;150(Pt 11):3613-30.
2003: Silvia Rüberg; Zhe-Xian Tian; Elizaveta Krol; Burkhard Linke; Folker Meyer; Yiping Wang; Alfred Pühler; Stefan Weidner; Anke Becker
Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
Journal of biotechnology 2003;106(2-3):255-68.
2003: Alexander Goesmann; Burkhard Linke; Oliver Rupp; Lutz Krause; Daniela Bartels; Michael Dondrup; Alice C McHardy; Andreas Wilke; Alfred Pühler; Folker Meyer
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
Journal of biotechnology 2003;106(2-3):157-67.
2003: Andreas Wilke; Christian Rückert; Daniela Bartels; Michael Dondrup; Alexander Goesmann; Andrea T Hüser; Sebastian Kespohl; Burkhard Linke; Martina Mahne; Alice C McHardy; Alfred Pühler; Folker Meyer
Bioinformatics support for high-throughput proteomics.
Journal of biotechnology 2003;106(2-3):147-56.
2003: Michael Dondrup; Alexander Goesmann; Daniela Bartels; Jörn Kalinowski; Lutz Krause; Burkhard Linke; Oliver Rupp; Alexander Sczyrba; Alfred Pühler; Folker Meyer
EMMA: a platform for consistent storage and efficient analysis of microarray data.
Journal of biotechnology 2003;106(2-3):135-46.
2003: Claudia Baar; Mark Eppinger; Günter Raddatz; Jörg Simon; Christa Lanz; Oliver Klimmek; Ramkumar Nandakumar; Roland Gross; Andrea Rosinus; Heike Keller; Pratik Jagtap; Burkhard Linke; Folker Meyer; Hermann Lederer; Stephan C Schuster
Complete genome sequence and analysis of Wolinella succinogenes.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(20):11690-5.
2003: Jörn Kalinowski; Brigitte Bathe; Daniela Bartels; Nicole Bischoff; Michael Bott; Andreas Burkovski; Nicole Dusch; Lothar Eggeling; Bernhard J Eikmanns; Lars Gaigalat; Alexander Goesmann; Michael Hartmann; Klaus Huthmacher; Reinhard Krämer; Burkhard Linke; Alice C McHardy; Folker Meyer; Bettina Möckel; Walter Pfefferle; Alfred Pühler; Daniel A Rey; Christian Rückert; Oliver Rupp; Hermann Sahm; Volker F Wendisch; Iris Wiegräbe; Andreas Tauch
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Journal of biotechnology 2003;104(1-3):5-25.
2003: Folker Meyer; Alexander Goesmann; Alice C McHardy; Daniela Bartels; Thomas Bekel; Jörn Clausen; Jörn Kalinowski; Burkhard Linke; Oliver Rupp; Robert Giegerich; Alfred Pühler
GenDB--an open source genome annotation system for prokaryote genomes.
Nucleic acids research 2003;31(8):2187-95.
2003: Anne Wulf; Katja Manthey; Jasmin Doll; Andreas M Perlick; Burkhard Linke; Thomas Bekel; Folker Meyer; Philipp Franken; Helge Küster; Franziska Krajinski
Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula.
Molecular plant-microbe interactions : MPMI 2003;16(4):306-14.