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Frédérique Lisacek

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Dominique Koua; Silja Laht; Philippe Favreau; Lauris Kaplinski; Maido Remm; Reto Stöcklin; Frédérique Lisacek
Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies.
Florent Gluck; Denis Hochstrasser; Christine Hoogland; Frédérique Lisacek; Markus Müller; Frédéric Nikitin; Carla Pasquarello; Xavier Robin; Jean-Charles Sanchez; Paola Antinori; Loïc Dayon; Vanessa Fétaud; Laurent Geiser; Anne Zufferey; Alexander Scherl
EasyProt--an easy-to-use graphical platform for proteomics data analysis.
Dominique Koua; Silja Laht; Frédérique Lisacek; Maido Remm; Age Brauer; Philippe Favreau; Lauris Kaplinski; Reto Stöcklin
ConoDictor: a tool for prediction of conopeptide superfamilies.

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All Publications

2013: Dominique Koua; Silja Laht; Philippe Favreau; Lauris Kaplinski; Maido Remm; Reto Stöcklin; Frédérique Lisacek
Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies.
Biochimica et biophysica acta 2013;1834(4):717-24.
2013: Florent Gluck; Denis Hochstrasser; Christine Hoogland; Frédérique Lisacek; Markus Müller; Frédéric Nikitin; Carla Pasquarello; Xavier Robin; Jean-Charles Sanchez; Paola Antinori; Loïc Dayon; Vanessa Fétaud; Laurent Geiser; Anne Zufferey; Alexander Scherl
EasyProt--an easy-to-use graphical platform for proteomics data analysis.
Journal of proteomics 2013;79():146-60.
2012: Dominique Koua; Silja Laht; Frédérique Lisacek; Maido Remm; Age Brauer; Philippe Favreau; Lauris Kaplinski; Reto Stöcklin
ConoDictor: a tool for prediction of conopeptide superfamilies.
Nucleic acids research 2012;40(Web Server issue):W238-41.
2012: Silja Laht; Frédérique Lisacek; Lauris Kaplinski; Dominique Koua; Reto Stöcklin; Maido Remm
Identification and classification of conopeptides using profile Hidden Markov Models.
Biochimica et biophysica acta 2012;1824(3):488-92.
2011: Erik Ahrné; Frédérique Lisacek; Frédéric Nikitin; Yuki Ohta; Alexander Scherl; Markus Müller
An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates.
Proteomics 2011;11(20):4085-95.
2011: Feliciano Priego-Capote; Maria Ramirez-Boo; Christine Hoogland; Frédérique Lisacek; Markus Mueller; Alexander Scherl; Jean-Charles Sanchez
Human hemolysate glycated proteome.
Analytical chemistry 2011;83(14):5673-80.
2011: Erik Ahrné; Frédérique Lisacek; Frédéric Nikitin; Markus Müller
QuickMod: A tool for open modification spectrum library searches.
Journal of proteome research 2011;10(7):2913-21.
2011: Xavier Robin; Natacha Turck; Alexandre Hainard; Natalia Tiberti; Frédérique Lisacek; Jean-Charles Sanchez; Markus Müller
pROC: an open-source package for R and S+ to analyze and compare ROC curves.
BMC bioinformatics 2011;12():77.
2011: Patricia M Palagi; Markus Müller; Daniel Walther; Frédérique Lisacek
LC/MS data processing for label-free quantitative analysis.
Methods in molecular biology (Clifton, N.J.) 2011;696():369-77.
2010: Feliciano Priego-Capote; Alexander Scherl; Markus Müller; Patrice Waridel; Frédérique Lisacek; jean-charles sanchez
Glycation isotopic labeling with 13C-reducing sugars for quantitative analysis of glycated proteins in human plasma.
Molecular & cellular proteomics : MCP 2010;9(3):579-92.
2010: Yohann Couté; Yannick Brunner; Domitille Schvartz; Céline Hernandez; Alexandre Masselot; Frédérique Lisacek; Claes B Wollheim; jean-charles sanchez
Early activation of the fatty acid metabolism pathway by chronic high glucose exposure in rat insulin secretory beta-cells.
Proteomics 2010;10(1):59-71.
2010: Natacha Turck; Laszlo Vutskits; Paola Sanchez-Pena; Xavier Robin; Alexandre Hainard; Marianne Gex-Fabry; Catherine Fouda; Hadiji Bassem; Markus Mueller; Frédérique Lisacek; Louis Puybasset; jean-charles sanchez
A multiparameter panel method for outcome prediction following aneurysmal subarachnoid hemorrhage.
Intensive care medicine 2010;36(1):107-15.
2009: Xavier Robin; Natacha Turck; Alexandre Hainard; Frédérique Lisacek; jean-charles sanchez; Markus Müller
Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics?
Expert review of proteomics 2009;6(6):675-89.
2009: Alexandre Hainard; Natalia Tiberti; Xavier Robin; Veerle Lejon; Dieudonné Mumba Ngoyi; Enock Matovu; John Charles Enyaru; Catherine Fouda; Joseph Mathu Ndung'u; Frédérique Lisacek; Markus Müller; Natacha Turck; jean-charles sanchez
A combined CXCL10, CXCL8 and H-FABP panel for the staging of human African trypanosomiasis patients.
PLoS neglected tropical diseases 2009;3(6):e459.
2009: Patricia M Palagi; Frédérique Lisacek; Ron D Appel
Database interrogation algorithms for identification of proteins in proteomic separations.
Methods in molecular biology (Clifton, N.J.) 2009;519():515-31.
2008: Ali R Vaezzadeh; Céline Hernandez; Oscar Vadas; Jacques J M Deshusses; Pierre Lescuyer; Frédérique Lisacek; Denis F Hochstrasser
PICarver: a software tool and strategy for peptides isoelectric focusing.
Journal of proteome research 2008;7(10):4336-45.
2008: Christine Hoogland; Khaled Mostaguir; Ron D Appel; Frédérique Lisacek
The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server.
Journal of proteomics 2008;71(2):245-8.
2008: Xavier Robin; Christine Hoogland; Ron D Appel; Frédérique Lisacek
MIAPEGelDB, a web-based submission tool and public repository for MIAPE gel electrophoresis documents.
Journal of proteomics 2008;71(2):249-51.
2007: Frédérique Lisacek; Christine Hoogland; Pierre Lescuyer; Denis F Hochstrasser; Ron D Appel
Using bioinformatic resources in the proteomic analysis of biological fluids.
Proteomics. Clinical applications 2007;1(8):900-15.
2007: Martijn J Schuemie; Christine Chichester; Frédérique Lisacek; Yohann Coute; Peter-Jan Roes; jean-charles sanchez; Jan A Kors; Barend Mons
Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE.
Proteomics 2007;7(6):921-31.
2007: Frédérique Lisacek; Ron D Appel
Systems Biology: a loose definition.
Proteomics 2007;7(6):825-7.
2007: Patrick Ruch; Antoine Geissbühler; Julien Gobeill; Frédérique Lisacek; Imad Tbahriti; Anne-Lise Veuthey; Alan R Aronson
Using discourse analysis to improve text categorization in MEDLINE.
Studies in health technology and informatics 2007;129(Pt 1):710-5.
2006: Frédérique Lisacek; Sarah Cohen-Boulakia; Ron D Appel
Proteome informatics II: bioinformatics for comparative proteomics.
Proteomics 2006;6(20):5445-66.
2006: Frédérique Lisacek
Web-based MS/MS data analysis.
Proteomics 2006;6 Suppl 2():22-32.
2006: Imad Tbahriti; Christine Chichester; Frédérique Lisacek; Patrick Ruch
Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library.
International journal of medical informatics 2006;75(6):488-95.
2006: Yohann Couté; Jennifer A Burgess; Jean-Jacques Diaz; Christine Chichester; Frédérique Lisacek; Anna Greco; jean-charles sanchez
Deciphering the human nucleolar proteome.
Mass spectrometry reviews 2006;25(2):215-34.
2005: Patrick Ruch; Robert Baud; Christine Chichester; Antoine Geissbühler; Frédérique Lisacek; Johann Marty; Dietrich Rebholz-Schuhmann; Imad Tbahriti; Anne-Lise Veuthey
Extracting key sentences with latent argumentative structuring.
Studies in health technology and informatics 2005;116():835-40.
2004: Pedro Gonnet; Kenneth E Rudd; Frédérique Lisacek
Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
Proteomics 2004;4(6):1597-613.
2004: Frédéric Nikitin; Bastien Rance; Masumi Itoh; Minoru Kanehisa; Frédérique Lisacek
Using protein motif combinations to update KEGG pathway maps and orthologue tables.
Genome informatics. International Conference on Genome Informatics 2004;15(2):266-75.
2003: Frédéric Nikitin; Frédérique Lisacek
Investigating protein domain combinations in complete proteomes.
Computational biology and chemistry 2003;27(4-5):481-95.
2003: Christine Chichester; Frédéric Nikitin; Jean-Christophe Ravarini; Frédérique Lisacek
Consistency checks for characterizing protein forms.
Computational biology and chemistry 2003;27(1):29-35.
2003: Frédérique Lisacek
Shaping biological knowledge.
Pharmacogenomics 2003;4(1):5-8.
2002: Pedro Gonnet; Frédérique Lisacek
Probabilistic alignment of motifs with sequences.
Bioinformatics (Oxford, England) 2002;18(8):1091-101.