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Edward Lobenhofer

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Oligonucleotide Array Sequence Analysis

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Hilary E Wade; Sakiko Kobayashi; Matthew L Eaton; Michelle S Jansen; Edward K Lobenhofer; Mathieu Lupien; Timothy R Geistlinger; Wencheng Zhu; Joseph R Nevins; Myles Brown; Deborah C Otteson; Donald P McDonnell
Multimodal regulation of E2F1 gene expression by progestins.
Andrey Alexeyenko; Deena M Wassenberg; Edward K Lobenhofer; Jerry Yen; Elwood Linney; Erik L L Sonnhammer; Joel N Meyer
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity.
Nan Mei; James C Fuscoe; Edward K Lobenhofer; Lei Guo
Application of microarray-based analysis of gene expression in the field of toxicogenomics.

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2010: Hilary E Wade; Sakiko Kobayashi; Matthew L Eaton; Michelle S Jansen; Edward K Lobenhofer; Mathieu Lupien; Timothy R Geistlinger; Wencheng Zhu; Joseph R Nevins; Myles Brown; Deborah C Otteson; Donald P McDonnell
Multimodal regulation of E2F1 gene expression by progestins.
Molecular and cellular biology 2010;30(8):1866-77.
2010: Andrey Alexeyenko; Deena M Wassenberg; Edward K Lobenhofer; Jerry Yen; Elwood Linney; Erik L L Sonnhammer; Joel N Meyer
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity.
PloS one 2010;5(5):e10465.
2010: Nan Mei; James C Fuscoe; Edward K Lobenhofer; Lei Guo
Application of microarray-based analysis of gene expression in the field of toxicogenomics.
Methods in molecular biology (Clifton, N.J.) 2010;597():227-41.
2009: Alissar Nehmé; Edward K Lobenhofer; W Daniel Stamer; Jeffrey L Edelman
Glucocorticoids with different chemical structures but similar glucocorticoid receptor potency regulate subsets of common and unique genes in human trabecular meshwork cells.
BMC medical genomics 2009;2():58.
2009: Martin Trick; Foo Cheung; Nizar Drou; Fiona Fraser; Edward K Lobenhofer; Patrick Hurban; Andreas Magusin; Christopher D Town; Ian Bancroft
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.
BMC plant biology 2009;9():50.
2009: Berna Demircan; Lisa M Dyer; Mallory Gerace; Edward K Lobenhofer; Keith D Robertson; Kevin D Brown
Comparative epigenomics of human and mouse mammary tumors.
Genes, chromosomes & cancer 2009;48(1):83-97.
2008: Edward K Lobenhofer; Todd Auman; Pamela E Blackshear; Gary A Boorman; Pierre R Bushel; Michael L Cunningham; Jennifer M Fostel; Kevin Gerrish; Alexandra N Heinloth; Richard D Irwin; David E Malarkey; B Alex Merrick; Stella O Sieber; Charles J Tucker; Sandra M Ward; Ralph E Wilson; Patrick Hurban; Raymond W Tennant; Richard S Paules
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype.
Genome biology 2008;9(6):R100.
2007: Retha R Newbold; Wendy N Jefferson; Sherry F Grissom; Elizabeth Padilla-Banks; Ryan J Snyder; Edward K Lobenhofer
Developmental exposure to diethylstilbestrol alters uterine gene expression that may be associated with uterine neoplasia later in life.
Molecular carcinogenesis 2007;46(9):783-96.
2007: Tong Zhou; Jeff Chou; Thomas E Mullen; Rani Elkon; Yingchun Zhou; Dennis A Simpson; Pierre R Bushel; Richard S Paules; Edward K Lobenhofer; Patrick Hurban; William K Kaufmann
Identification of primary transcriptional regulation of cell cycle-regulated genes upon DNA damage.
Cell cycle (Georgetown, Tex.) 2007;6(8):972-81.
2007: Kazuhiko Mori; Pamela E Blackshear; Edward K Lobenhofer; Joel Parker; Denise P Orzech; Joseph H Roycroft; Kimwa L Walker; Kennita A Johnson; Tiwanda A Marsh; Richard D Irwin; Gary A Boorman
Hepatic transcript levels for genes coding for enzymes associated with xenobiotic metabolism are altered with age.
Toxicologic pathology 2007;35(2):242-51.
2006: Stéphanie Gaillard; Linda L Grasfeder; Christiane L Haeffele; Edward K Lobenhofer; Tzu-Ming Chu; Russell D Wolfinger; Dmitri Kazmin; Timothy R Koves; Deborah M Muoio; Ching-yi Chang; Donald P McDonnell
Receptor-selective coactivators as tools to define the biology of specific receptor-coactivator pairs.
Molecular cell 2006;24(5):797-803.
2006: Lei Guo; Edward K Lobenhofer; Charles Wang; Richard Shippy; Stephen C Harris; Lu Zhang; Nan Mei; Tao Chen; Damir Herman; Federico M Goodsaid; Patrick Hurban; Kenneth L Phillips; Jun Xu; Xutao Deng; Yongming Andrew Sun; Weida Tong; Yvonne P Dragan; Leming Shi
Rat toxicogenomic study reveals analytical consistency across microarray platforms.
Nature biotechnology 2006;24(9):1162-9.
2006: Patterson Tucker; Edward K Lobenhofer; Stephanie B Fulmer-Smentek; Patrick J Collins; Tzu-Ming Chu; Wenjun Bao; Hong Fang; Ernest S Kawasaki; Janet Hager; Irina R Tikhonova; Stephen J Walker; Liang Zhang; Patrick Hurban; Françoise de Longueville; James C Fuscoe; Weida Tong; Leming Shi; Russell D Wolfinger
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.
Nature biotechnology 2006;24(9):1140-50.
2006: Tong Zhou; Jeff W Chou; Dennis A Simpson; Yingchun Zhou; Thomas E Mullen; Margarida Goulart de Medeiros; Pierre R Bushel; Richard S Paules; Xuebin Yang; Patrick Hurban; Edward K Lobenhofer; William K Kaufmann
Profiles of global gene expression in ionizing-radiation-damaged human diploid fibroblasts reveal synchronization behind the G1 checkpoint in a G0-like state of quiescence.
Environmental health perspectives 2006;114(4):553-9.
2006: Edward K Lobenhofer; Gary A Boorman; Kenneth L Phillips; Alexandra N Heinloth; David E Malarkey; Pamela E Blackshear; Christopher Houle; Patrick Hurban
Application of visualization tools to the analysis of histopathological data enhances biological insight and interpretation.
Toxicologic pathology 2006;34(7):921-8.
2006: Charles Cannon; C S Kua; Edward K Lobenhofer; Patrick Hurban
Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform.
Nucleic acids research 2006;34(18):e121.
2005: Richard J Santen; Edward K Lobenhofer; C A Afshari; Y Bao; Robert X-D Song
Adaptation of estrogen-regulated genes in long-term estradiol deprived MCF-7 breast cancer cells.
Breast cancer research and treatment 2005;94(3):213-23.
2005: Christine L Powell; Oksana Kosyk; Blair U Bradford; Joel Parker; Edward K Lobenhofer; Ayumi Denda; Fumiyuki Uematsu; Dai Nakae; Ivan Rusyn
Temporal correlation of pathology and DNA damage with gene expression in a choline-deficient model of rat liver injury.
Hepatology (Baltimore, Md.) 2005;42(5):1137-47.
2005: Gary A Boorman; Pamela E Blackshear; Joel Parker; Edward K Lobenhofer; David E Malarkey; Molly K Vallant; Diane K Gerken; Richard D Irwin
Hepatic gene expression changes throughout the day in the Fischer rat: implications for toxicogenomic experiments.
Toxicological sciences : an official journal of the Society of Toxicology 2005;86(1):185-93.
2005: Richard D Irwin; Joel Parker; Edward K Lobenhofer; Leo T Burka; Pamela E Blackshear; Molly K Vallant; Edward H Lebetkin; Diane F Gerken; Gary A Boorman
Transcriptional profiling of the left and median liver lobes of male f344/n rats following exposure to acetaminophen.
Toxicologic pathology 2005;33(1):111-7.
2005: Gary A Boorman; Richard D Irwin; Molly K Vallant; Diane K Gerken; Edward K Lobenhofer; milton hejtmancik; Patrick Hurban; April Brys; Gregory S Travlos; Joel Parker; Christopher Portier
Variation in the hepatic gene expression in individual male Fischer rats.
Toxicologic pathology 2005;33(1):102-10.
2005: Sherry F Grissom; Edward K Lobenhofer; Charles J Tucker
A qualitative assessment of direct-labeled cDNA products prior to microarray analysis.
BMC genomics 2005;6():36.
2004: Omer Barad; Eti Meiri; Amir Avniel; Ranit Aharonov; Adi Barzilai; Isaac Bentwich; Uri Einav; Shlomit Gilad; Patrick Hurban; Yael Karov; Edward K Lobenhofer; Eilon Sharon; Yoel Shiboleth; Michael Shtutman; Zvi Bentwich; Paz Einat
MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues.
Genome research 2004;14(12):2486-94.
2004: Edward K Lobenhofer; Xiangqin Cui; Lee Bennett; P LouAnn Cable; B Alex Merrick; Gary Churchill; Cynthia A Afshari
Exploration of low-dose estrogen effects: identification of No Observed Transcriptional Effect Level (NOTEL).
Toxicologic pathology 2004;32(4):482-92.
2004: Michelle S Jansen; Susan C Nagel; Phillippa J Miranda; Edward K Lobenhofer; Cynthia A Afshari; Donald P McDonnell
Short-chain fatty acids enhance nuclear receptor activity through mitogen-activated protein kinase activation and histone deacetylase inhibition.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(18):7199-204.
2003: Shyamal Peddada; Edward K Lobenhofer; Leping Li; Cynthia A Afshari; Clarice R Weinberg; David M Umbach
Gene selection and clustering for time-course and dose-response microarray experiments using order-restricted inference.
Bioinformatics (Oxford, England) 2003;19(7):834-41.
2003: Leslie C Hodges; Jennifer D Cook; Edward K Lobenhofer; Leping Li; Lee Bennett; Pierre R Bushel; C Marcelo Aldaz; Cynthia A Afshari; Cheryl Lyn Walker
Tamoxifen functions as a molecular agonist inducing cell cycle-associated genes in breast cancer cells.
Molecular cancer research : MCR 2003;1(4):300-11.
2002: Lisa K Gilliam; Edward K Lobenhofer; Paula K Greer; Richard M Scearce; Frank D Cirisano; Jeffrey R Marks; Laura P Hale
BRCA2 monoclonal antibodies react with differentiating epithelium.
Hybridoma and hybridomics 2002;21(4):261-9.
2002: Edward K Lobenhofer; Lee Bennett; P LouAnn Cable; Leping Li; Pierre R Bushel; Cynthia A Afshari
Regulation of DNA replication fork genes by 17beta-estradiol.
Molecular endocrinology (Baltimore, Md.) 2002;16(6):1215-29.
2001: Edward K Lobenhofer; Pierre R Bushel; Cynthia A Afshari; Hisham K Hamadeh
Progress in the application of DNA microarrays.
Environmental health perspectives 2001;109(9):881-91.
2001: Laura Havrilesky; CP McMahon; Edward K Lobenhofer; Regina Whitaker; Jeffrey R Marks; Andrew Berchuck
Relationship between expression of coactivators and corepressors of hormone receptors and resistance of ovarian cancers to growth regulation by steroid hormones.
Journal of the Society for Gynecologic Investigation 2001;8(2):104-13.
2000: Edward K Lobenhofer; Jeffrey R Marks
Estrogen-induced mitogenesis of MCF-7 cells does not require the induction of mitogen-activated protein kinase activity.
The Journal of steroid biochemistry and molecular biology 2000;75(1):11-20.
2000: Edward K Lobenhofer; Gudrun Huper; J Dirk Iglehart; Jeffrey R Marks
Inhibition of mitogen-activated protein kinase and phosphatidylinositol 3-kinase activity in MCF-7 cells prevents estrogen-induced mitogenesis.
Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research 2000;11(2):99-110.