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Arjen Lommen

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Publications

TOP 3
Arjen Lommen; Henk J van der Kamp; Martijn K van der Lee; G van der Weg; Harrie J Kools; Hans G J Mol
metAlignID: a high-throughput software tool set for automated detection of trace level contaminants in comprehensive LECO two-dimensional gas chromatography time-of-flight mass spectrometry data.
Jeroen C W Rijk; MH Blokland; Ron L A P Hoogenboom; Arjen Lommen; Ad Peijnenburg; Toine F H Bovee
Screening for modulatory effects on steroidogenesis using the human H295R adrenocortical cell line: a metabolomics approach.
Stewart F Graham; Arjen Lommen; Bartolomeo Biolatti; Francesca T Cannizzo; Christopher T Elliott; Ainhoa Ruiz-Aracama; Mark H Mooney
Use of NMR metabolomic plasma profiling methodologies to identify illicit growth-promoting administrations.

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All Publications

2012: Arjen Lommen; Henk J van der Kamp; Martijn K van der Lee; G van der Weg; Harrie J Kools; Hans G J Mol
metAlignID: a high-throughput software tool set for automated detection of trace level contaminants in comprehensive LECO two-dimensional gas chromatography time-of-flight mass spectrometry data.
Journal of chromatography. A 2012;1263():169-78.
2012: Jeroen C W Rijk; MH Blokland; Ron L A P Hoogenboom; Arjen Lommen; Ad Peijnenburg; Toine F H Bovee
Screening for modulatory effects on steroidogenesis using the human H295R adrenocortical cell line: a metabolomics approach.
Chemical research in toxicology 2012;25(8):1720-31.
2012: Stewart F Graham; Arjen Lommen; Bartolomeo Biolatti; Francesca T Cannizzo; Christopher T Elliott; Ainhoa Ruiz-Aracama; Mark H Mooney
Use of NMR metabolomic plasma profiling methodologies to identify illicit growth-promoting administrations.
Analytical and bioanalytical chemistry 2012;403(2):573-82.
2012: Marlon J A Jetten; S M H Claessen; Theo M C M De Kok; Stan Gaj; Danyel Jennen; Arjen Lommen; Ad Peijnenburg; Ainhoa Ruiz-Aracama; Rob H Stierum; Joost H M van Delft; Eugene P van Someren; Jos C S Kleinjans
'Omics analysis of low dose acetaminophen intake demonstrates novel response pathways in humans.
Toxicology and applied pharmacology 2012;259(3):320-8.
2012: Arjen Lommen
Data (pre-)processing of nominal and accurate mass LC-MS or GC-MS data using MetAlign.
Methods in molecular biology (Clifton, N.J.) 2012;860():229-53.
2012: A Ruiz-Aracama; L van de Vijver; M Huber; Arjen Lommen; R Hoogenboom
Application of an untargeted metabolomics approach for the identification of compounds that may be responsible for observed differential effects in chickens fed an organic and a conventional diet.
Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment 2012;29(3):323-32.
2011: Frank A M de Bok; Patrick W M Janssen; Arjen Lommen; Sander Sieuwerts; Johan E T van Hylckama Vlieg; Jumamurat R Bayjanov; Douwe Molenaar
Volatile compound fingerprinting of mixed-culture fermentations.
Applied and environmental microbiology 2011;77(17):6233-9.
2011: Gaud Dervilly-Pinel; Martien Essers; Jean-Philippe Antignac; Sylvain Chereau; Arjen Lommen; Michel W F Nielen; Lauriane Rambaud; Stefan Weigel; Bruno Le Bizec
Assessment of two complementary liquid chromatography coupled to high resolution mass spectrometry metabolomics strategies for the screening of anabolic steroid treatment in calves.
Analytica chimica acta 2011;700(1-2):144-54.
2011: Danyel Jennen; Arjen Lommen; Christina Magkoufopoulou; Ad Peijnenburg; Ainhoa Ruiz-Aracama; Joost van Delft; Jos Kleinjans
Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells.
BMC systems biology 2011;5():139.
2011: Ainhoa Ruiz-Aracama; Joost van Delft; Ad Peijnenburg; Caroline Hellfrisch; Danyel Jennen; Jos Kleinjans; Arjen Lommen
An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin.
BMC genomics 2011;12():251.
2010: R J B Peters; J C W Rijk; Toine F H Bovee; A W J M Nijrolder; Arjen Lommen; Michel W F Nielen
Identification of anabolic steroids and derivatives using bioassay-guided fractionation, UHPLC/TOFMS analysis and accurate mass database searching.
Analytica chimica acta 2010;664(1):77-88.
2009: Bjorn J A Berendsen; Martien L Essers; Patrick P J Mulder; Gerard D van Bruchem; Arjen Lommen; Wendy M van Overbeek; Linda A A M Stolker
Newly identified degradation products of ceftiofur and cephapirin impact the analytical approach for quantitative analysis of kidney.
Journal of chromatography. A 2009;1216(46):8177-86.
2009: Jeroen C W Rijk; Arjen Lommen; Martien L Essers; Maria J Groot; Johan M Van Hende; Timo G Doeswijk; Michel W F Nielen
Metabolomics approach to anabolic steroid urine profiling of bovines treated with prohormones.
Analytical chemistry 2009;81(16):6879-88.
2009: Arjen Lommen
MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing.
Analytical chemistry 2009;81(8):3079-86.
2007: Arjen Lommen; G van der Weg; Marcel C van Engelen; G Bor; L A P Hoogenboom; Michel W F Nielen
An untargeted metabolomics approach to contaminant analysis: pinpointing potential unknown compounds.
Analytica chimica acta 2007;584(1):43-9.
2007: Ric C H De Vos; Sofia Moco; Arjen Lommen; Joost J B Keurentjes; Raoul J Bino; Robert D Hall
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry.
Nature protocols 2007;2(4):778-91.
2006: Joost J B Keurentjes; Jingyuan Fu; C H Ric de Vos; Arjen Lommen; Robert D Hall; Raoul J Bino; Linus H W van der Plas; Ritsert C Jansen; Dick Vreugdenhil; Maarten Koornneef
The genetics of plant metabolism.
Nature genetics 2006;38(7):842-9.
2006: Antoine H P America; Jan H G Cordewener; Mark H A van Geffen; Arjen Lommen; Johannes P C Vissers; Raoul J Bino; Robert D Hall
Alignment and statistical difference analysis of complex peptide data sets generated by multidimensional LC-MS.
Proteomics 2006;6(2):641-53.
2005: Yury M Tikunov; Arjen Lommen; C H Ric de Vos; Harrie A Verhoeven; Raoul J Bino; Robert D Hall; Arnaud Bovy
A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles.
Plant physiology 2005;139(3):1125-37.
2005: Raoul J Bino; CH Ric De Vos; Michal Lieberman; Robert D Hall; Arnaud Bovy; Harry Jonker; Yury M Tikunov; Arjen Lommen; Sofia Moco; Ilan Levin
The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome.
The New phytologist 2005;166(2):427-38.
2005: Hans Bakker; Francoise Routier; Stefan Oelmann; Wilco Jordi; Arjen Lommen; Rita Gerardy-Schahn; Dirk Bosch
Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line.
Glycobiology 2005;15(2):193-201.
2003: Vladimir V Tolstikov; Arjen Lommen; Kazuki Nakanishi; Nobuo Tanaka; Oliver Fiehn
Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics.
Analytical chemistry 2003;75(23):6737-40.
2002: Arjen Lommen; Robert Schilt; J Weseman; A H Roos; J W van Velde; Michel W F Nielen
Application of 1D 1H NMR for fast non-targeted screening and compositional analysis of steroid cocktails and veterinary drug formulations administered to livestock.
Journal of pharmaceutical and biomedical analysis 2002;28(1):87-96.
2001: Hans Bakker; E Schijlen; T de Vries; Wietske E C M Schiphorst; Wilco Jordi; Arjen Lommen; Dirk Bosch; Irma Van Die
Plant members of the alpha1-->3/4-fucosyltransferase gene family encode an alpha1-->4-fucosyltransferase, potentially involved in Lewis(a) biosynthesis, and two core alpha1-->3-fucosyltransferases.
FEBS letters 2001;507(3):307-12.
2001: IJ Elbers; Geert M Stoopen; Hans Bakker; LH Stevens; Muriel Bardor; JW Molthoff; Wilco Jordi; Dirk Bosch; Arjen Lommen
Influence of growth conditions and developmental stage on N-glycan heterogeneity of transgenic immunoglobulin G and endogenous proteins in tobacco leaves.
Plant physiology 2001;126(3):1314-22.
2001: Hans Bakker; Muriel Bardor; JW Molthoff; Véronique Gomord; IJ Elbers; LH Stevens; Wilco Jordi; Arjen Lommen; Loïc Faye; Patrice Lerouge; Dirk Bosch
Galactose-extended glycans of antibodies produced by transgenic plants.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2899-904.
2001: Michel W F Nielen; Johannes P C Vissers; R E Fuchs; J W van Velde; Arjen Lommen
Screening for anabolic steroids and related compounds in illegal cocktails by liquid chromatography/time-of-flight mass spectrometry and liquid chromatography/quadrupole time-of-flight tandem mass spectrometry with accurate mass measurement.
Rapid communications in mass spectrometry : RCM 2001;15(17):1577-85.
2000: LH Stevens; Geert M Stoopen; IJ Elbers; JW Molthoff; H A Bakker; Arjen Lommen; Dirk Bosch; Wilco Jordi
Effect of climate conditions and plant developmental stage on the stability of antibodies expressed in transgenic tobacco.
Plant physiology 2000;124(1):173-82.
2000: Arjen Lommen; Markus Godejohann; Dini P Venema; Peter C H Hollman; Manfred Spraul
Application of directly coupled HPLC-NMR-MS to the identification and confirmation of quercetin glycosides and phloretin glycosides in apple peel.
Analytical chemistry 2000;72(8):1793-7.
1999: Hans Bakker; Arjen Lommen; Wilco Jordi; Willem J Stiekema; Dirk Bosch
An Arabidopsis thaliana cDNA complements the N-acetylglucosaminyltransferase I deficiency of CHO Lec1 cells.
Biochemical and biophysical research communications 1999;261(3):829-32.
1999: Willem Haasnoot; P Stouten; Geert Cazemier; Arjen Lommen; J F Nouws; Henk Keukens
Immunochemical detection of aminoglycosides in milk and kidney.
The Analyst 1999;124(3):301-5.