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Anthony Long

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Genes & Molecular Sequences

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Publications

TOP 3
Kevin R Thornton; Andrew J Foran; Anthony D Long
Properties and modeling of GWAS when complex disease risk is due to non-complementing, deleterious mutations in genes of large effect.
Molly K Burke; Anthony D Long
What paths do advantageous alleles take during short-term evolutionary change?
Elizabeth G King; Anthony D Long; Karl W Broman; Steven R Hoofer; Casey L McNeil; Chris M Merkes; Saunak Sen; Stuart J Macdonald
Genetic dissection of a model complex trait using the Drosophila Synthetic Population Resource.

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All Publications

2013: Kevin R Thornton; Andrew J Foran; Anthony D Long
Properties and modeling of GWAS when complex disease risk is due to non-complementing, deleterious mutations in genes of large effect.
PLoS genetics 2013;9(2):e1003258.
2012: Molly K Burke; Anthony D Long
What paths do advantageous alleles take during short-term evolutionary change?
Molecular ecology 2012;21(20):4913-6.
2012: Elizabeth G King; Anthony D Long; Karl W Broman; Steven R Hoofer; Casey L McNeil; Chris M Merkes; Saunak Sen; Stuart J Macdonald
Genetic dissection of a model complex trait using the Drosophila Synthetic Population Resource.
Genome research 2012;22(8):1558-66.
2012: Arnaud Martin; W Owen McMillan; Nicola J Nadeau; Riccardo Papa; Brian A Counterman; Georg Halder; Ryan I Hill; Chris D Jiggins; Marcus R Kronforst; Anthony D Long; Robert D Reed
Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(31):12632-7.
2012: Elizabeth G King; Stuart J Macdonald; Anthony D Long
Properties and power of the Drosophila Synthetic Population Resource for the routine dissection of complex traits.
Genetics 2012;191(3):935-49.
2012: Galina Kislukhin; Mahtab Jafari; Maura L Murphy; Anthony D Long
Chemotherapy-induced toxicity is highly heritable in Drosophila melanogaster.
Pharmacogenetics and genomics 2012;22(4):285-9.
2012: Olivier Tenaillon; Albert F Bennett; Rebecca L Gaut; Anthony D Long; Pamela McDonald; Alejandra Rodríguez-Verdugo; Brandon S Gaut
The molecular diversity of adaptive convergence.
Science (New York, N.Y.) 2012;335(6067):457-61.
2011: Inês C Conceição; Jonathan D Gruber; Anthony D Long; Patrícia Beldade
Genomic sequence around butterfly wing development genes: annotation and comparative analysis.
PloS one 2011;6(8):e23778.
2010: Molly K Burke; Joseph P Dunham; Parvin Shahrestani; Kevin R Thornton; Michael R Rose; Anthony D Long
Genome-wide analysis of a long-term evolution experiment with Drosophila.
Nature 2010;467(7315):587-90.
2009: Patrícia Beldade; Arjèn E Van't Hof; Maria Adelina Jerónimo; Anthony D Long
Microsatellite markers associated with genes expressed in developing wings of Bicyclus anynana butterflies.
Molecular ecology resources 2009;9(6):1487-92.
2009: Patrícia Beldade; Suzanne V Saenko; Nicolien Pul; Anthony D Long
A gene-based linkage map for Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome.
PLoS genetics 2009;5(2):e1000366.
2009: Jonathan D Gruber; Anthony D Long
Cis-regulatory variation is typically polyallelic in Drosophila.
Genetics 2009;181(2):661-70.
2007: Stuart J Macdonald; Anthony D Long
Joint estimates of quantitative trait locus effect and frequency using synthetic recombinant populations of Drosophila melanogaster.
Genetics 2007;176(2):1261-81.
2007: Anthony D Long; Patrícia Beldade; Stuart J Macdonald
Estimation of population heterozygosity and library construction-induced mutation rate from expressed sequence tag collections.
Genetics 2007;176(1):711-4.
2007: Jonathan D Gruber; Anne Genissel; Stuart J Macdonald; Anthony D Long
How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila?
Genetics 2007;175(4):1987-97.
2006: Mahtab Jafari; Anthony D Long; Laurence D Mueller; Michael R Rose
The pharmacology of ageing in Drosophila.
Current drug targets 2006;7(11):1479-83.
2006: Mark David Drapeau; Shawn A Cyran; Michaela M Viering; Pamela K Geyer; Anthony D Long
A cis-regulatory sequence within the yellow locus of Drosophila melanogaster required for normal male mating success.
Genetics 2006;172(2):1009-30.
2006: Stuart J Macdonald; Anthony D Long
Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura.
Genome biology 2006;7(7):R67.
2006: Patrícia Beldade; Stephen Rudd; Jonathan D Gruber; Anthony D Long
A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model.
BMC genomics 2006;7():130.
2005: Stuart J Macdonald; Tomi Pastinen; Anthony D Long
The effect of polymorphisms in the enhancer of split gene complex on bristle number variation in a large wild-caught cohort of Drosophila melanogaster.
Genetics 2005;171(4):1741-56.
2005: Michelle M Riehle; Albert F Bennett; Anthony D Long
Differential Patterns of Gene Expression and Gene Complement in Laboratory-Evolved Lines of E. coli.
Integrative and comparative biology 2005;45(3):532-8.
2005: Stuart J Macdonald; Anthony D Long
Prospects for identifying functional variation across the genome.
Proceedings of the National Academy of Sciences of the United States of America 2005;102 Suppl 1():6614-21.
2005: Michelle M Riehle; Albert F Bennett; Anthony D Long
Changes in gene expression following high-temperature adaptation in experimentally evolved populations of E. coli.
Physiological and biochemical zoology : PBZ 2005;78(3):299-315.
2005: Patrícia Beldade; Paul M Brakefield; Anthony D Long
Generating phenotypic variation: prospects from "evo-devo" research on Bicyclus anynana wing patterns.
Evolution & development 2005;7(2):101-7.
2005: Stuart J Macdonald; Anthony D Long
Identifying signatures of selection at the enhancer of split neurogenic gene complex in Drosophila.
Molecular biology and evolution 2005;22(3):607-19.
2005: Stuart J Macdonald; Tomi Pastinen; Anne Genissel; Theodore W Cornforth; Anthony D Long
A low-cost open-source SNP genotyping platform for association mapping applications.
Genome biology 2005;6(12):R105.
2004: Stuart J Macdonald; Anthony D Long
A potential regulatory polymorphism upstream of hairy is not associated with bristle number variation in wild-caught Drosophila.
Genetics 2004;167(4):2127-31.
2004: Anne Genissel; Tomi Pastinen; Andrea Dowell; Trudy F C Mackay; Anthony D Long
No evidence for an association between common nonsynonymous polymorphisms in delta and bristle number variation in natural and laboratory populations of Drosophila melanogaster.
Genetics 2004;166(1):291-306.
2003: Theodore W Cornforth; Anthony D Long
Inferences regarding the numbers and locations of QTLs under multiple-QTL models using interval mapping and composite interval mapping.
Genetical research 2003;82(2):139-49.
2003: Brandon S Gaut; Anthony D Long
The lowdown on linkage disequilibrium.
The Plant cell 2003;15(7):1502-6.
2003: Michelle M Riehle; Albert F Bennett; Richard E Lenski; Anthony D Long
Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature.
Physiological genomics 2003;14(1):47-58.
2003: Mark David Drapeau; Anna Radovic; Patricia J Wittkopp; Anthony D Long
A gene necessary for normal male courtship, yellow, acts downstream of fruitless in the Drosophila melanogaster larval brain.
Journal of neurobiology 2003;55(1):53-72.
2002: Michael R Rose; Laurence D Mueller; Anthony D Long
Pharmacology, genomics, and the evolutionary biology of ageing.
Free radical research 2002;36(12):1293-7.
2002: Mark David Drapeau; Anthony D Long
Bioinformatics and cytogenetics of unusual Drosophila melanogaster X-chromosome morphology.
DNA sequence : the journal of DNA sequencing and mapping 2002;13(5):241-3.
2002: Charles Robin; Richard F Lyman; Anthony D Long; Charles H Langley; Trudy F C Mackay
hairy: A quantitative trait locus for drosophila sensory bristle number.
Genetics 2002;162(1):155-64.
2002: Anna Radovic; Patricia J Wittkopp; Anthony D Long; Mark David Drapeau
Immunohistochemical colocalization of Yellow and male-specific Fruitless in Drosophila melanogaster neuroblasts.
Biochemical and biophysical research communications 2002;293(4):1262-4.
2002: Michael R Rose; Anthony D Long
Ageing: the many-headed monster.
Current biology : CB 2002;12(9):R311-2.
2002: Patrícia Beldade; Paul M Brakefield; Anthony D Long
Contribution of Distal-less to quantitative variation in butterfly eyespots.
Nature 2002;415(6869):315-8.
2001: Maud I Tenaillon; Mark C Sawkins; Anthony D Long; R L Gaut; John Doebley; Brandon S Gaut
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
Proceedings of the National Academy of Sciences of the United States of America 2001;98(16):9161-6.
2001: Anthony D Long; H J Mangalam; B Y Chan; Lorenzo Tolleri; G Wesley Hatfield; Pierre Baldi
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12.
The Journal of biological chemistry 2001;276(23):19937-44.
2001: Pierre Baldi; Anthony D Long
A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
Bioinformatics (Oxford, England) 2001;17(6):509-19.
2001: Michelle M Riehle; Albert F Bennett; Anthony D Long
Genetic architecture of thermal adaptation in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(2):525-30.
2000: SM Arfin; Anthony D Long; E T Ito; Lorenzo Tolleri; Michelle M Riehle; E S Paegle; G Wesley Hatfield
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor.
The Journal of biological chemistry 2000;275(38):29672-84.
2000: Anthony D Long; Richard F Lyman; A H Morgan; Charles H Langley; Trudy F C Mackay
Both naturally occurring insertions of transposable elements and intermediate frequency polymorphisms at the achaete-scute complex are associated with variation in bristle number in Drosophila melanogaster.
Genetics 2000;154(3):1255-69.
1999: Anthony D Long; C H Langley
The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits.
Genome research 1999;9(8):720-31.
1998: Anthony D Long; Richard F Lyman; Charles H Langley; Trudy F C Mackay
Two sites in the Delta gene region contribute to naturally occurring variation in bristle number in Drosophila melanogaster.
Genetics 1998;149(2):999-1017.
1997: Anthony D Long; M N Grote; C H Langley
Genetic analysis of complex diseases.
Science (New York, N.Y.) 1997;275(5304):1328; author reply 1329-30.
1996: Anthony D Long; S L Mullaney; Trudy F C Mackay; Charles H Langley
Genetic interactions between naturally occurring alleles at quantitative trait loci and mutant alleles at candidate loci affecting bristle number in Drosophila melanogaster.
Genetics 1996;144(4):1497-510.
1995: Anthony D Long; S L Mullaney; L A Reid; James D Fry; Charles H Langley; Trudy F C Mackay
High resolution mapping of genetic factors affecting abdominal bristle number in Drosophila melanogaster.
Genetics 1995;139(3):1273-91.
1994: C Lai; Richard F Lyman; Anthony D Long; Charles H Langley; Trudy F C Mackay
Naturally occurring variation in bristle number and DNA polymorphisms at the scabrous locus of Drosophila melanogaster.
Science (New York, N.Y.) 1994;266(5191):1697-702.
1994: Montserrat Aguadé; W Meyers; Anthony D Long; Charles H Langley
Single-strand conformation polymorphism analysis coupled with stratified DNA sequencing reveals reduced sequence variation in the su(s) and su(wa) regions of the Drosophila melanogaster X chromosome.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(11):4658-62.