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Rodrigo Lopez

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TOP 3
Paula de Matos; Rodrigo Lopez; Francis Rowland; Rafael Alcántara; Hong Cao; Jennifer A Cham; Christoph Steinbeck
The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.
Weizhong Li; Hamish McWilliam; Stephane Nauche; Bartosz Kondratowicz; Rodrigo Lopez
The Annotation-enriched non-redundant patent sequence databases.
Guy Cochrane; Richard Gibson; Neil Goodgame; Mikyung Jang; Simon Kay; Rasko Leinonen; Xiu Lin; Rodrigo Lopez; Hamish McWilliam; Arnaud Oisel; Nima Pakseresht; Swapna Pallreddy; Youngmi Park; Sheila Plaister; Rajesh Radhakrishnan; Stephane Rivière; Marc Rossello; Alexander Senf; Nicole Silvester; Dmitriy Smirnov; Petra Ten Hoopen; Ana Toribio; Daniel Vaughan; Blaise Alako; Clara Amid; Lawrence Bower; Ana Cerdeño-Tárraga; Iain Cleland; Vadim Zalunin
Facing growth in the European Nucleotide Archive.

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All Publications

2013: Paula de Matos; Rodrigo Lopez; Francis Rowland; Rafael Alcántara; Hong Cao; Jennifer A Cham; Christoph Steinbeck
The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.
BMC bioinformatics 2013;14():103.
2013: Weizhong Li; Hamish McWilliam; Stephane Nauche; Bartosz Kondratowicz; Rodrigo Lopez
The Annotation-enriched non-redundant patent sequence databases.
Database : the journal of biological databases and curation 2013;2013():bat005.
2013: Guy Cochrane; Richard Gibson; Neil Goodgame; Mikyung Jang; Simon Kay; Rasko Leinonen; Xiu Lin; Rodrigo Lopez; Hamish McWilliam; Arnaud Oisel; Nima Pakseresht; Swapna Pallreddy; Youngmi Park; Sheila Plaister; Rajesh Radhakrishnan; Stephane Rivière; Marc Rossello; Alexander Senf; Nicole Silvester; Dmitriy Smirnov; Petra Ten Hoopen; Ana Toribio; Daniel Vaughan; Blaise Alako; Clara Amid; Lawrence Bower; Ana Cerdeño-Tárraga; Iain Cleland; Vadim Zalunin
Facing growth in the European Nucleotide Archive.
Nucleic acids research 2013;41(Database issue):D30-5.
2012: Maria V Schneider; Celia W G van Gelder; Brendan W Vaughan; Allegra Via; Peter Walter; James Watson; Teresa K Attwood; Marie-Claude Blatter; Thomas Blicher; Michelle D Brazas; Aidan Budd; Javier De Las Rivas; Pedro Fernandes; Joachim Jacob; Rafael C Jimenez; Phil Jones; Rodrigo Lopez; Jane Loveland; Jennifer McDowall; Tommi H Nyrönen; Kristian Rother; Cath Brooksbank
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
Briefings in bioinformatics 2012;13(3):383-9.
2010: Victoria Ann Wright; Brendan W Vaughan; Thomas Laurent; Rodrigo Lopez; Cath Brooksbank; Maria Victoria Schneider
Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.
Briefings in bioinformatics 2010;11(6):552-62.
2010: Mickael Goujon; Hamish McWilliam; Weizhong Li; Franck Valentin; Silvano Squizzato; Juri Paern; Rodrigo Lopez
A new bioinformatics analysis tools framework at EMBL-EBI.
Nucleic acids research 2010;38(Web Server issue):W695-9.
2010: Franck Valentin; Silvano Squizzato; Mickael Goujon; Hamish McWilliam; Juri Paern; Rodrigo Lopez
Fast and efficient searching of biological data resources--using EB-eye.
Briefings in bioinformatics 2010;11(4):375-84.
2010: Rasko Leinonen; Ruth Akhtar; Ewan Birney; James K Bonfield; Lawrence Bower; Matt Corbett; Ying Cheng; Fehmi Demiralp; Nadeem Faruque; Neil Goodgame; Richard Gibson; Gemma Hoad; Christopher Hunter; Mikyung Jang; Steven Leonard; Quan Lin; Rodrigo Lopez; Michael Maguire; Hamish McWilliam; Sheila Plaister; Rajesh Radhakrishnan; S Sobhany; Guy Slater; Petra Ten Hoopen; Franck Valentin; Robert Vaughan; Vadim Zalunin; Daniel Zerbino; Guy Cochrane
Improvements to services at the European Nucleotide Archive.
Nucleic acids research 2010;38(Database issue):D39-45.
2010: Weizhong Li; Hamish McWilliam; Ana Richart de la Torre; Adam Grodowski; Irina Benediktovich; Mickael Goujon; Stephane Nauche; Rodrigo Lopez
Non-redundant patent sequence databases with value-added annotations at two levels.
Nucleic acids research 2010;38(Database issue):D52-6.
2009: Hamish McWilliam; Franck Valentin; Mickael Goujon; Weizhong Li; Menaka Narayanasamy; Jenny Martin; Teresa Miyar; Rodrigo Lopez
Web services at the European Bioinformatics Institute-2009.
Nucleic acids research 2009;37(Web Server issue):W6-10.
2007: Alberto Labarga; Franck Valentin; Mikael Anderson; Rodrigo Lopez
Web services at the European bioinformatics institute.
Nucleic acids research 2007;35(Web Server issue):W6-11.
2006: Cathy H Wu; Rolf Apweiler; Amos Bairoch; Darren A Natale; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Raja Mazumder; Claire O'Donovan; Nicole Redaschi; Baris E Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic acids research 2006;34(Database issue):D187-91.
2005: S Pillai; Ville Silventoinen; Kimmo Kallio; M Senger; S Sobhany; J Tate; Sameer Velankar; Adel Golovin; Kim Henrick; P Rice; Peter Stoehr; Rodrigo Lopez
SOAP-based services provided by the European Bioinformatics Institute.
Nucleic acids research 2005;33(Web Server issue):W25-8.
2005: Emmanuel Quevillon; Ville Silventoinen; S Pillai; Nicola Harte; Nicola Mulder; Rolf Apweiler; Rodrigo Lopez
InterProScan: protein domains identifier.
Nucleic acids research 2005;33(Web Server issue):W116-20.
2005: Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
The Universal Protein Resource (UniProt).
Nucleic acids research 2005;33(Database issue):D154-9.
2004: Rasko Leinonen; Federico Garcia Diez; David Binns; Wolfgang Fleischmann; Rodrigo Lopez; Rolf Apweiler
UniProt archive.
Bioinformatics (Oxford, England) 2004;20(17):3236-7.
2004: Nicola Harte; Ville Silventoinen; Emmanuel Quevillon; Stephen Robinson; Kimmo Kallio; Xavier Fustero; Pravin Patel; Petteri Jokinen; Rodrigo Lopez
Public web-based services from the European Bioinformatics Institute.
Nucleic acids research 2004;32(Web Server issue):W3-9.
2004: Evelyn Camon; Michele Magrane; Daniel Barrell; Vivian Lee; Emily Dimmer; John Maslen; David Binns; Nicola Harte; Rodrigo Lopez; Rolf Apweiler
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Nucleic acids research 2004;32(Database issue):D262-6.
2004: Rolf Apweiler; Amos Bairoch; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
UniProt: the Universal Protein knowledgebase.
Nucleic acids research 2004;32(Database issue):D115-9.
2004: Tamara Kulikova; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Kirsty Bates; Paul Browne; Alexandra van den Broek; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; Maria Garcia-Pastor; Nicola Harte; Carola Kanz; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Michelle McHale; Francesco Nardone; Ville Silventoinen; Peter Stoehr; Guenter Stoesser; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
The EMBL Nucleotide Sequence Database.
Nucleic acids research 2004;32(Database issue):D27-30.
2003: Rodrigo Lopez; Karyn Duggan; Nicola Harte; Asif Kibria
Public services from the European Bioinformatics Institute.
Briefings in bioinformatics 2003;4(4):332-40.
2003: Rodrigo Lopez; Ville Silventoinen; Stephen Robinson; Asif Kibria; Warren Gish
WU-Blast2 server at the European Bioinformatics Institute.
Nucleic acids research 2003;31(13):3795-8.
2003: Rodrigo Lopez; Stephen Robinson; Asif Kibria; Nicola Harte; Gulam Patel; Rob Harper; Emmanuel Quevillon; Ville Silventoinen; Kimmo Kallio; Petteri Jokinen
The European Bioinformatics Institute web site: a new view.
Bioinformatics (Oxford, England) 2003;19(4):546-7.
2003: Catherine Brooksbank; Evelyn Camon; Midori A Harris; Michele Magrane; Maria J Martin; Nicola Mulder; Claire O'Donovan; Helen Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; Kim Henrick; Rodrigo Lopez; Guenter Stoesser; Peter Stoehr; Graham Cameron
The European Bioinformatics Institute's data resources.
Nucleic acids research 2003;31(1):43-50.
2003: Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Francesco Nardone; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
The EMBL Nucleotide Sequence Database: major new developments.
Nucleic acids research 2003;31(1):17-22.
2002: Evgeny M Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold
The EBI SRS server-new features.
Bioinformatics (Oxford, England) 2002;18(8):1149-50.
2002: Evgeny M Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold
The EBI SRS server--recent developments.
Bioinformatics (Oxford, England) 2002;18(2):368-73.
2002: Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Evelyn Camon; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Nicole Redaschi; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
The EMBL Nucleotide Sequence Database.
Nucleic acids research 2002;30(1):21-6.
2001: Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; F Corpet; Michael D R Croning; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jérôme Gouzy; Henning Hermjakob; Nicolas Hulo; Inge Jonassen; Daniel Kahn; Alexander Kanapin; Youla Karavidopoulou; Rodrigo Lopez; B Marx; Nicola Mulder; Tom Oinn; Marco Pagni; Florence Servant; Christian J A Sigrist; Evgeny M Zdobnov
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic acids research 2001;29(1):37-40.
2001: Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Evelyn Camon; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Vincent Lombard; Rodrigo Lopez; Helen Parkinson; Nicole Redaschi; P Sterk; Peter Stoehr; Mary Ann Tuli
The EMBL nucleotide sequence database.
Nucleic acids research 2001;29(1):17-21.
2000: Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; F Corpet; Michael D R Croning; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jérôme Gouzy; Henning Hermjakob; Nicolas Hulo; Inge Jonassen; Daniel Kahn; Alexander Kanapin; Youla Karavidopoulou; Rodrigo Lopez; B Marx; Nicola Mulder; Tom Oinn; Marco Pagni; Florence Servant; Christian J A Sigrist; Evgeny M Zdobnov
InterPro--an integrated documentation resource for protein families, domains and functional sites.
Bioinformatics (Oxford, England) 2000;16(12):1145-50.
1999: Guenter Stoesser; Mary Ann Tuli; Rodrigo Lopez; P Sterk
The EMBL Nucleotide Sequence Database.
Nucleic acids research 1999;27(1):18-24.