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Catherine Lozupone

Research Profile

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16S Ribosomal RNA

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Publications

TOP 3
Se Jin Song; Dan Knights; Christian Lauber; Catherine Lozupone; Sara Nakielny; Donna Berg-Lyons; J Gregory Caporaso; Jose C Clemente; Elizabeth K Costello; Noah Fierer; Jeffrey I Gordon; Gregory Humphrey; Rob Knight
Cohabiting family members share microbiota with one another and with their dogs.
Catherine Lozupone; Jeroen Raes; Jesse Zaneveld; Jeremiah J Faith; Karoline Faust; Daniel N Frank; Jeffrey I Gordon; Rob Knight
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts.
Sharilyn Almodovar; Amanda A Allshouse; Cecile Goujard; Kenneth W Hammer; Priscilla Y Hsue; Marc Humbert; Rob Knight; Catherine Lozupone; Daniel McDonald; Nicola Petrosillo; Sarah Roemer; Robert J Shelton; Gerald Simonneau; Edu B Suarez; Norbert F Voelkel; Jeremy Widmann; Sonia C Flores
Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension.

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All Publications

2013: Se Jin Song; Dan Knights; Christian Lauber; Catherine Lozupone; Sara Nakielny; Donna Berg-Lyons; J Gregory Caporaso; Jose C Clemente; Elizabeth K Costello; Noah Fierer; Jeffrey I Gordon; Gregory Humphrey; Rob Knight
Cohabiting family members share microbiota with one another and with their dogs.
eLife 2013;2():e00458.
2012: Catherine Lozupone; Jeroen Raes; Jesse Zaneveld; Jeremiah J Faith; Karoline Faust; Daniel N Frank; Jeffrey I Gordon; Rob Knight
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts.
Genome research 2012;22(10):1974-84.
2012: Sharilyn Almodovar; Amanda A Allshouse; Cecile Goujard; Kenneth W Hammer; Priscilla Y Hsue; Marc Humbert; Rob Knight; Catherine Lozupone; Daniel McDonald; Nicola Petrosillo; Sarah Roemer; Robert J Shelton; Gerald Simonneau; Edu B Suarez; Norbert F Voelkel; Jeremy Widmann; Sonia C Flores
Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension.
AIDS research and human retroviruses 2012;28(6):607-18.
2011: Dan Knights; Catherine Lozupone; Laura Wegener Parfrey; Jesse Zaneveld; Rob Knight
Human-associated microbial signatures: examining their predictive value.
Cell host & microbe 2011;10(4):292-6.
2011: Jesse R R Zaneveld; Jose C Clemente; Dan Knights; Justin Kuczynski; Catherine Lozupone; Laura Wegener Parfrey; Jesse Stombaugh; Will Van Treuren; Rob Knight
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation.
Trends in microbiology 2011;19(10):472-82.
2011: J Gregory Caporaso; Christian L Lauber; William A Walters; Donna Berg-Lyons; Catherine Lozupone; Peter J Turnbaugh; Noah Fierer; Rob Knight
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
Proceedings of the National Academy of Sciences of the United States of America 2011;108 Suppl 1():4516-22.
2011: Catherine Lozupone; Manuel E Lladser; Dan Knights; Jesse Stombaugh; Rob Knight
UniFrac: an effective distance metric for microbial community comparison.
The ISME journal 2011;5(2):169-72.
2011: Antonio Gonzalez; Jesse Stombaugh; Catherine Lozupone; Peter J Turnbaugh; Jeffrey I Gordon; Rob Knight
The mind-body-microbial continuum.
Dialogues in clinical neuroscience 2011;13(1):55-62.
2011: Diana R Nemergut; Elizabeth K Costello; Micah Hamady; Catherine Lozupone; Lin Jiang; Steven K Schmidt; Noah Fierer; Alan R Townsend; Cory C Cleveland; Lee Stanish; Rob Knight
Global patterns in the biogeography of bacterial taxa.
Environmental microbiology 2011;13(1):135-44.
2010: Justin Kuczynski; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Noah Fierer; Rob Knight
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns.
Nature methods 2010;7(10):813-9.
2010: Jesse R Zaneveld; Catherine Lozupone; Jeffrey I Gordon; Rob Knight
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives.
Nucleic acids research 2010;38(12):3869-79.
2010: Andrew J King; Kristen R Freeman; Katherine F McCormick; Ryan C Lynch; Catherine Lozupone; Rob Knight; Steven K Schmidt
Biogeography and habitat modelling of high-alpine bacteria.
Nature communications 2010;1():53.
2010: Micah Hamady; Catherine Lozupone; Rob Knight
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.
The ISME journal 2010;4(1):17-27.
2008: Catherine Lozupone; Micah Hamady; Brandi L Cantarel; Pedro M Coutinho; Bernard Henrissat; Jeffrey I Gordon; Rob Knight
The convergence of carbohydrate active gene repertoires in human gut microbes.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(39):15076-81.
2008: Catherine Lozupone; Rob Knight
Species divergence and the measurement of microbial diversity.
FEMS microbiology reviews 2008;32(4):557-78.
2008: Jesse Zaneveld; Peter J Turnbaugh; Catherine Lozupone; Ruth E Ley; Micah Hamady; Jeffrey I Gordon; Rob Knight
Host-bacterial coevolution and the search for new drug targets.
Current opinion in chemical biology 2008;12(1):109-14.
2007: Catherine Lozupone; Rob Knight
Global patterns in bacterial diversity.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(27):11436-40.
2007: Catherine Lozupone; Micah Hamady; Scott T Kelley; Rob Knight
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities.
Applied and environmental microbiology 2007;73(5):1576-85.
2007: Zongzhi Liu; Catherine Lozupone; Micah Hamady; Frederic D Bushman; Rob Knight
Short pyrosequencing reads suffice for accurate microbial community analysis.
Nucleic acids research 2007;35(18):e120.
2007: Rob Knight; Peter Maxwell; Amanda Birmingham; Jason Carnes; J Gregory Caporaso; Brett C Easton; Michael Eaton; Micah Hamady; Helen Lindsay; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Michael Robeson; Raymond Sammut; Sandra Smit; Matthew J Wakefield; Jeremy Widmann; Shandy Wikman; Stephanie Wilson; Hua Ying; Gavin A Huttley
PyCogent: a toolkit for making sense from sequence.
Genome biology 2007;8(8):R171.
2006: Catherine Lozupone; Micah Hamady; Rob Knight
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.
BMC bioinformatics 2006;7():371.
2005: Michal Legiewicz; Catherine Lozupone; Rob Knight; Michael Yarus
Size, constant sequences, and optimal selection.
RNA (New York, N.Y.) 2005;11(11):1701-9.
2003: Catherine Lozupone; Shankar Changayil; Irene Majerfeld; Michael Yarus
Selection of the simplest RNA that binds isoleucine.
RNA (New York, N.Y.) 2003;9(11):1315-22.