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Xian Adiconis

Research Profile

Genes & Molecular Sequences

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Publications

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Manfred G Grabherr; Brian J Haas; Nir Hacohen; Joshua Z Levin; Kerstin Lindblad-Toh; Evan Mauceli; Chad Nusbaum; Raktima Raychowdhury; Xian Adiconis; Ido Amit; Bruce W Birren; Zehua Chen; Federica di Palma; Lin Fan; Nir Friedman; Andreas Gnirke; Nicholas Rhind; Dawn A Thompson; Moran Yassour; Qiandong Zeng; Aviv Regev
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Michal Rabani; Joshua Z Levin; Lin Fan; Xian Adiconis; Raktima Raychowdhury; Manuel Garber; Andreas Gnirke; Chad Nusbaum; Nir Hacohen; Nir Friedman; Ido Amit; Aviv Regev
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.
Joshua Z Levin; Moran Yassour; Xian Adiconis; Chad Nusbaum; Dawn Anne Thompson; Nir Friedman; Andreas Gnirke; Aviv Regev
Comprehensive comparative analysis of strand-specific RNA sequencing methods.

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All Publications

2011: Manfred G Grabherr; Brian J Haas; Nir Hacohen; Joshua Z Levin; Kerstin Lindblad-Toh; Evan Mauceli; Chad Nusbaum; Raktima Raychowdhury; Xian Adiconis; Ido Amit; Bruce W Birren; Zehua Chen; Federica di Palma; Lin Fan; Nir Friedman; Andreas Gnirke; Nicholas Rhind; Dawn A Thompson; Moran Yassour; Qiandong Zeng; Aviv Regev
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Nature biotechnology 2011;29(7):644-52.
2011: Michal Rabani; Joshua Z Levin; Lin Fan; Xian Adiconis; Raktima Raychowdhury; Manuel Garber; Andreas Gnirke; Chad Nusbaum; Nir Hacohen; Nir Friedman; Ido Amit; Aviv Regev
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.
Nature biotechnology 2011;29(5):436-42.
2010: Joshua Z Levin; Moran Yassour; Xian Adiconis; Chad Nusbaum; Dawn Anne Thompson; Nir Friedman; Andreas Gnirke; Aviv Regev
Comprehensive comparative analysis of strand-specific RNA sequencing methods.
Nature methods 2010;7(9):709-15.
2010: Mitchell Guttman; manuel garber; Joshua Z Levin; Julie Donaghey; James Robinson; Xian Adiconis; Lin Fan; Magdalena J Koziol; Andreas Gnirke; Chad Nusbaum; John L Rinn; Eric S Lander; Aviv Regev
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.
Nature biotechnology 2010;28(5):503-10.
2010: Michael Berger; Joshua Z Levin; Krishna Vijayendran; Andrey Sivachenko; Xian Adiconis; Jared Maguire; Laura A Johnson; James Robinson; Roel G Verhaak; Carrie Sougnez; Robert C Onofrio; Liuda Ziaugra; Kristian Cibulskis; Elisabeth Laine; Jordi Barretina; Wendy Winckler; David E Fisher; Gad Getz; Matthew Meyerson; David B Jaffe; Stacey B Gabriel; Eric S Lander; Reinhard Dummer; Andreas Gnirke; Chad Nusbaum; Levi A Garraway
Integrative analysis of the melanoma transcriptome.
Genome research 2010;20(4):413-27.
2010: Moran Yassour; Jenna Pfiffner; Joshua Z Levin; Xian Adiconis; Andreas Gnirke; Chad Nusbaum; Dawn-Anne Thompson; Nir Friedman; Aviv Regev
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species.
Genome biology 2010;11(8):R87.
2009: Moran Yassour; Tommy Kaplan; Hunter B Fraser; Joshua Z Levin; Jenna Pfiffner; Xian Adiconis; Gary Schroth; Shujun Luo; Irina Khrebtukova; Andreas Gnirke; Chad Nusbaum; Dawn-Anne Thompson; Nir Friedman; Aviv Regev
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(9):3264-9.
2009: Joshua Z Levin; Michael Berger; Xian Adiconis; Peter Rogov; Alexandre Melnikov; Timothy Fennell; Chad Nusbaum; Levi A Garraway; Andreas Gnirke
Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts.
Genome biology 2009;10(10):R115.
2009: Josiemer Mattei; Laurence D Parnell; Chao-Qiang Lai; Bibiana Garcia-Bailo; Xian Adiconis; Jian Shen; Donna K Arnett; Serkalem Demissie; Katherine L Tucker; Jose M Ordovas
Disparities in allele frequencies and population differentiation for 101 disease-associated single nucleotide polymorphisms between Puerto Ricans and non-Hispanic whites.
BMC genetics 2009;10():45.
2008: Chao-Qiang Lai; Katherine L Tucker; Laurence D Parnell; Xian Adiconis; Bibiana García-Bailo; John Griffith; Mohsen Meydani; José M Ordovás
PPARGC1A variation associated with DNA damage, diabetes, and cardiovascular diseases: the Boston Puerto Rican Health Study.
Diabetes 2008;57(4):809-16.
2007: Chao-Qiang Lai; Donna K Arnett; Dolores Corella; Robert J Straka; Michael Y Tsai; James M Peacock; Xian Adiconis; Laurence D Parnell; James E Hixson; Michael A Province; Jose Ordovas
Fenofibrate effect on triglyceride and postprandial response of apolipoprotein A5 variants: the GOLDN study.
Arteriosclerosis, thrombosis, and vascular biology 2007;27(6):1417-25.
2006: Chao-Qiang Lai; Dolores Corella; Serkalem Demissie; L Adrienne Cupples; Xian Adiconis; Yueping Zhu; Laurence D Parnell; Katherine L Tucker; Jose Ordovas
Dietary intake of n-6 fatty acids modulates effect of apolipoprotein A5 gene on plasma fasting triglycerides, remnant lipoprotein concentrations, and lipoprotein particle size: the Framingham Heart Study.
Circulation 2006;113(17):2062-70.
2006: Kristin L Herron; Ingrid E Lofgren; Xian Adiconis; Jose Ordovas; Maria Luz Fernandez
Associations between plasma lipid parameters and APOC3 and APOA4 genotypes in a healthy population are independent of dietary cholesterol intake.
Atherosclerosis 2006;184(1):113-20.
2005: Qiong Yang; Chao-Qiang Lai; Laurence D Parnell; L Adrienne Cupples; Xian Adiconis; Yueping Zhu; Peter W F Wilson; David E Housman; Amanda M Shearman; Ralph B D'Agostino; Jose Ordovas
Genome-wide linkage analyses and candidate gene fine mapping for HDL3 cholesterol: the Framingham Study.
Journal of lipid research 2005;46(7):1416-25.
2004: Chao-Qiang Lai; Serkalem Demissie; L Adrienne Cupples; Yueping Zhu; Xian Adiconis; Laurence D Parnell; Dolores Corella; Jose Ordovas
Influence of the APOA5 locus on plasma triglyceride, lipoprotein subclasses, and CVD risk in the Framingham Heart Study.
Journal of lipid research 2004;45(11):2096-105.
2004: E Shyong Tai; Dolores Corella; Mabel Deurenberg-Yap; Xian Adiconis; Suok Kai Chew; Chee Eng Tan; Jose Ordovas
Differential effects of the C1431T and Pro12Ala PPARgamma gene variants on plasma lipids and diabetes risk in an Asian population.
Journal of lipid research 2004;45(4):674-85.
2003: Chao-Qiang Lai; E Shyong Tai; Chee Eng Tan; Jeffery Cutter; Suok Kai Chew; Yue-Ping Zhu; Xian Adiconis; Jose Ordovas
The APOA5 locus is a strong determinant of plasma triglyceride concentrations across ethnic groups in Singapore.
Journal of lipid research 2003;44(12):2365-73.
2003: E Shyong Tai; Xian Adiconis; Jose Ordovas; R Carmena-Ramon; J Real; Dolores Corella; Juan F Ascaso; Rafael Carmena
Polymorphisms at the SRBI locus are associated with lipoprotein levels in subjects with heterozygous familial hypercholesterolemia.
Clinical genetics 2003;63(1):53-8.
2003: E Shyong Tai; Jose Ordovas; Dolores Corella; Mabel Deurenberg-Yap; Edmund Chan; Xian Adiconis; Suok Kai Chew; Lih Ming Loh; Chee Eng Tan
The TaqIB and -629C>A polymorphisms at the cholesteryl ester transfer protein locus: associations with lipid levels in a multiethnic population. The 1998 Singapore National Health Survey.
Clinical genetics 2003;63(1):19-30.