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Ping-Chiang Lyu

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Szu-Ting Lin; Yi-Wen Lo; Ping-Chiang Lyu; Wen-Ching Wang; Margaret Dah-Tsyr Chang; Shing-Jyh Chang; Yi-Wen Chen; Hsiu-Chuan Chou; Hong-Lin Chan
Redox-proteomic analysis of doxorubicin resistance-induced altered thiol activity in uterine carcinoma.
Chi-Ching Lee; Wei-Cheng Lo; Ping-Chiang Lyu; Cheng-Yu Ma; Yi-Ping Phoebe Chen; Tzu-Jung Yao; Chuan Yi Tang
GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects.
Tien-Sheng Tseng; Min-Fang Shih; Chao-Sheng Cheng; Pei-Lin He; Shang-Te Danny Hsu; Ping-Chiang Lyu
Residue-specific annotation of disorder-to-order transition and cathepsin inhibition of a propeptide-like crammer from D. melanogaster.

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2013: Szu-Ting Lin; Yi-Wen Lo; Ping-Chiang Lyu; Wen-Ching Wang; Margaret Dah-Tsyr Chang; Shing-Jyh Chang; Yi-Wen Chen; Hsiu-Chuan Chou; Hong-Lin Chan
Redox-proteomic analysis of doxorubicin resistance-induced altered thiol activity in uterine carcinoma.
Journal of pharmaceutical and biomedical analysis 2013;78-79():1-8.
2013: Chi-Ching Lee; Wei-Cheng Lo; Ping-Chiang Lyu; Cheng-Yu Ma; Yi-Ping Phoebe Chen; Tzu-Jung Yao; Chuan Yi Tang
GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects.
Gene 2013;518(1):114-23.
2013: Tien-Sheng Tseng; Min-Fang Shih; Chao-Sheng Cheng; Pei-Lin He; Shang-Te Danny Hsu; Ping-Chiang Lyu
Residue-specific annotation of disorder-to-order transition and cathepsin inhibition of a propeptide-like crammer from D. melanogaster.
PloS one 2013;8(1):e54187.
2012: Szu-Ting Lin; Ping-Chiang Lyu; Wen-Ching Wang; Margaret Dah-Tsyr Chang; Shing-Jyh Chang; Yi-Wen Chen; Hsiu-Chuan Chou; Hong-Lin Chan
Proteomic analysis of proteins responsible for the development of doxorubicin resistance in human uterine cancer cells.
Journal of proteomics 2012;75(18):5822-47.
2012: Kuo-Chang Cheng; Jhen-Ni Liao; Ping-Chiang Lyu
Crystal structure of the dopamine N-acetyltransferase-acetyl-CoA complex provides insights into the catalytic mechanism.
The Biochemical journal 2012;446(3):395-404.
2012: Chih-Ping Chen; You-Hsuan Chen; Schu-Rern Chern; Hsiu-Chuan Chou; Sheng-Hsiang Li; Yi-Wen Lo; Ping-Chiang Lyu; Te-Lung Tsai; Shing-Jyh Chang; Hong-Lin Chan
Placenta proteome analysis from Down syndrome pregnancies for biomarker discovery.
Molecular bioSystems 2012;8(9):2360-72.
2012: Wei-Cheng Lo; Tian Dai; Jenn-Kang Hwang; Yen-Yi Liu; Li-Fen Wang; Ping-Chiang Lyu
CPred: a web server for predicting viable circular permutations in proteins.
Nucleic acids research 2012;40(Web Server issue):W232-7.
2012: Hsiu-Chuan Chou; Cheng-Wen Lin; Ying-Chieh Lu; Ping-Chiang Lyu; John F Timms; Yi-Wen Chen; Chao-Sheng Cheng; Hong-Lin Chan
Proteomic and redox-proteomic analysis of berberine-induced cytotoxicity in breast cancer cells.
Journal of proteomics 2012;75(11):3158-76.
2012: Tian-Ren Lee; Kuo-Sen Lin; Hong-Lin Chan; Hsin-Tzu Chan; Shun-Hong Huang; Chi-Ching Lee; Hsiao-Yun Lee; Ping-Chiang Lyu
Proteome reference map of Drosophila melanogaster head.
Proteomics 2012;12(11):1875-8.
2012: Hsin-Tzu Chan; Shun-Hong Huang; Hsiao-Yun Lee; Tian-Ren Lee; Hong-Lin Chan; Tzu-Kang Sang; Ping-Chiang Lyu
Proteomic analysis of a drosophila IBMPFD model reveals potential pathogenic mechanisms.
Molecular bioSystems 2012;8(6):1730-41.
2012: Tien-Sheng Tseng; Min-Fang Shih; Dian-Jiun Chen; Chao-Sheng Cheng; Shang-Te Danny Hsu; Yu-Nan Liu; Ping-Chiang Lyu
A molten globule-to-ordered structure transition of Drosophila melanogaster crammer is required for its ability to inhibit cathepsin.
The Biochemical journal 2012;442(3):563-72.
2012: Preyesh Stephen; Kai-Li Tseng; Yu-Nan Liu; Ping-Chiang Lyu
Circular permutation of the starch-binding domain: inversion of ligand selectivity with increased affinity.
Chemical communications (Cambridge, England) 2012;48(20):2612-4.
2012: Po-Jung Huang; Wei-Chen Lin; Yong-Han Lin; Ping-Chiang Lyu; Chin-Hung Sun; Shih-Chieh Chen; Petrus Tang
Identification of putative miRNAs from the deep-branching unicellular flagellates.
Genomics 2012;99(2):101-7.
2012: Preyesh Stephen; Kuo-Chang Cheng; Ping-Chiang Lyu
Crystal structure of circular permuted RoCBM21 (CP90): dimerisation and proximity of binding sites.
PloS one 2012;7(11):e50488.
2012: Chien-Hua Peng; Shih-Chi Peng; Masanori Arita; Shu-Hsi Lin; Ping-Chiang Lyu; Chuan-Yi Tang
Feature Identification of Compensatory Gene Pairs without Sequence Homology in Yeast.
Comparative and functional genomics 2012;2012():653174.
2012: Yun-Tzai Lee; Wei-Cheng Lo; Ping-Chiang Lyu; Tz-Hsiang Su; Shih-Che Sue
Circular permutation prediction reveals a viable backbone disconnection for split proteins: an approach in identifying a new functional split intein.
PloS one 2012;7(8):e43820.
2012: Shu-Hsi Lin; Ping-Chiang Lyu; Chuan-Yi Tang; Miwa Yoshimoto; Masanori Arita
Phylogenomic and domain analysis of iterative polyketide synthases in Aspergillus species.
Evolutionary bioinformatics online 2012;8():373-87.
2012: Chao-Sheng Cheng; Yong-Chun Luo; Ping-Chiang Lyu; Chih-Hao Chen; Wen-Ting Chen; Yu-Wen Chen; Hsien-Sheng Yin
Substitution of asparagine 76 by a tyrosine residue induces domain swapping in Helicobacter pylori phosphopantetheine adenylyltransferase.
Journal of biomolecular structure & dynamics 2012;30(4):488-502.
2012: Chi-Ching Lee; Wei-Cheng Lo; Yi-Ping Phoebe Chen; Szu-Ming Lai; Chuan Yi Tang; Ping-Chiang Lyu
Metabolic classification of microbial genomes using functional probes.
BMC genomics 2012;13():157.
2012: Nai-Jyuan Wang; Ya-Fen Yang; Ming-Nan Chen; Chao-Sheng Cheng; Chi-Ching Lee; Wei-Cheng Lo; Ping-Chiang Lyu
Construction and analysis of a plant non-specific lipid transfer protein database (nsLTPDB).
BMC genomics 2012;13 Suppl 1():S9.
2012: Wei-Cheng Lo; Tian Dai; Jenn-Kang Hwang; Yen-Yi Liu; Li-Fen Wang; Ping-Chiang Lyu
Deciphering the preference and predicting the viability of circular permutations in proteins.
PloS one 2012;7(2):e31791.
2011: Yi-Wen Chen; Hsiu-Chuan Chou; Chiao-Yuan Fan; Ping-Chun Huang; Shun-Hong Huang; Cheng-Chin Kuo; Ching-Hsuan Law; Ji-Min Li; Szu-Ting Lin; Jieh-Yuan Liu; Ying-Chieh Lu; Ping-Chiang Lyu; Chieh-Lin Wu; Jing-Yiing Wu; Jing-Yi Chen; You-Hsuan Chen; Hong-Lin Chan
Proteomic analysis of gemcitabine-induced drug resistance in pancreatic cancer cells.
Molecular bioSystems 2011;7(11):3065-74.
2011: Peir-Haur Hung; Yi-Wen Chen; Kuang-Chi Cheng; Hsiu-Chuan Chou; Ping-Chiang Lyu; Ying-Chieh Lu; Ying-Ray Lee; Cheng-Tao Wu; Hong-Lin Chan
Plasma proteomic analysis of the critical limb ischemia markers in diabetic patients with hemodialysis.
Molecular bioSystems 2011;7(6):1990-8.
2011: Yi-Wen Chen; Hsiu-Chuan Chou; Ping-Chiang Lyu; Hsien-Sheng Yin; Huang Fang-Liang; Wun-Shaing Wayne Chang; Chiao-Yuan Fan; I-Fan Tu; Tzu-Chia Lai; Szu-Ting Lin; Ying-Chieh Lu; Chieh-Lin Wu; Shun-Hong Huang; Hong-Lin Chan
Mitochondrial proteomics analysis of tumorigenic and metastatic breast cancer markers.
Functional & integrative genomics 2011;11(2):225-39.
2011: Chao-Sheng Cheng; Wen-Shiang Lu; I-Fan Tu; Ping-Chiang Lyu; Hsien-Sheng Yin
Comparative analysis of receptor binding by chicken and human interleukin-1β.
Journal of molecular modeling 2011;17(6):1283-94.
2011: Chao-Sheng Cheng; Chih-Hao Chen; Yong-Chun Luo; Wen-Tin Chen; Shun-Ya Chang; Ping-Chiang Lyu; Mou-Chieh Kao; Hsien-Sheng Yin
Crystal structure and biophysical characterisation of Helicobacter pylori phosphopantetheine adenylyltransferase.
Biochemical and biophysical research communications 2011;408(2):356-61.
2011: Chao-Sheng Cheng; Wen-Tin Chen; Long Huw Lee; Yu-Wen Chen; Shun-Ya Chang; Ping-Chiang Lyu; Hsien-Sheng Yin
Structural and functional comparison of cytokine interleukin-1 beta from chicken and human.
Molecular immunology 2011;48(6-7):947-55.
2011: Che-Wei Chang; Ping-Chiang Lyu; Masanori Arita
Reconstructing phylogeny from metabolic substrate-product relationships.
BMC bioinformatics 2011;12 Suppl 1():S27.
2010: Ya-Ju Hsieh; Jau-Song Yu; Ping-Chiang Lyu
Characterization of photodynamic therapy responses elicited in A431 cells containing intracellular organelle-localized photofrin.
Journal of cellular biochemistry 2010;111(4):821-33.
2010: Yi-Hui Peng; Mohane Coumar; Jiun-Shyang Leou; Jian-Sung Wu; Hui-Yi Shiao; Chia-Hui Lin; Wen-Hsing Lin; Tzu-Wen Lien; Xin Chen; John T A Hsu; Yu-Sheng Chao; Chien-Fu Huang; Ping-Chiang Lyu; Hsing-Pang Hsieh; Su-Ying Wu
Structural basis for the improved potency of peroxisome proliferator-activated receptor (PPAR) agonists.
ChemMedChem 2010;5(10):1707-16.
2010: Meng-Ru Ho; Yuan-Chao Lou; Shu-Yi Wei; Shih-Chi Luo; Wen-Chang Lin; Ping-Chiang Lyu; Chinpan Chen
Human RegIV protein adopts a typical C-type lectin fold but binds mannan with two calcium-independent sites.
Journal of molecular biology 2010;402(4):682-95.
2010: Tzong-Shyuan Lee; Ching-Chian Pan; Chien-Chung Peng; Yu Ru Kou; Chien-Yu Chen; Li-Chieh Ching; Tsung-Huang Tsai; Shu-Fen Chen; Ping-Chiang Lyu; Song-Kun Shyue
Anti-atherogenic effect of berberine on LXRalpha-ABCA1-dependent cholesterol efflux in macrophages.
Journal of cellular biochemistry 2010;111(1):104-10.
2010: Po-Jung Huang; Yi-Chung Liu; Chi-Ching Lee; Wei-Chen Lin; Richie Ruei-Chi Gan; Ping-Chiang Lyu; Petrus Tang
DSAP: deep-sequencing small RNA analysis pipeline.
Nucleic acids research 2010;38(Web Server issue):W385-91.
2010: Hsiu-Chuan Chou; Yi-Wen Chen; Tian-Ren Lee; Fen-Shiun Wu; Hsin-Tsu Chan; Ping-Chiang Lyu; John Francis Timms; Hong-Lin Chan
Proteomics study of oxidative stress and Src kinase inhibition in H9C2 cardiomyocytes: a cell model of heart ischemia-reperfusion injury and treatment.
Free radical biology & medicine 2010;49(1):96-108.
2010: Jo-Chun Chen; Biing-Jiun Uang; Ping-Chiang Lyu; Jang-Yang Chang; Ko-Jiunn Liu; Ching-Chuan Kuo; Hsing-Pang Hsieh; Hsin-Chieh Wang; Chao-Sheng Cheng; Yi-Hsun Chang; Margaret Dah-Tsyr Chang; Wun-Shaing Wayne Chang; Chun-Cheng Lin
Design and synthesis of alpha-ketoamides as cathepsin S inhibitors with potential applications against tumor invasion and angiogenesis.
Journal of medicinal chemistry 2010;53(11):4545-9.
2010: Tai-Long Pan; Yu-Chiang Hung; Pei-Wen Wang; Shui-Ten Chen; Teng-Kuei Hsu; Nardnisa Sintupisut; Chao-Sheng Cheng; Ping-Chiang Lyu
Functional proteomic and structural insights into molecular targets related to the growth inhibitory effect of tanshinone IIA on HeLa cells.
Proteomics 2010;10(5):914-29.
2010: Rae-Mann Hsu; Ming-Hung Tsai; Ya-Ju Hsieh; Ping-Chiang Lyu; Jau-Song Yu
Identification of MYO18A as a novel interacting partner of the PAK2/betaPIX/GIT1 complex and its potential function in modulating epithelial cell migration.
Molecular biology of the cell 2010;21(2):287-301.
2010: Chia-Han Chu; Wei-Cheng Lo; Hsin-Wei Wang; Yen-Chu Hsu; Jenn-Kang Hwang; Ping-Chiang Lyu; Tun-Wen Pai; Chuan Yi Tang
Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques.
PloS one 2010;5(10):e13361.
2010: Hsiao-Chun Tseng; Ping-Chiang Lyu; Wen-Chang Lin
Nuclear localization of orphan receptor protein kinase (Ror1) is mediated through the juxtamembrane domain.
BMC cell biology 2010;11():48.
2010: Hsiang-Ling Huang; Hsiang-Wei Hsing; Tzu-Chia Lai; Yi-Wen Chen; Tian-Ren Lee; Hsin-Tsu Chan; Ping-Chiang Lyu; Chieh-Lin Wu; Ying-Chieh Lu; Szu-Ting Lin; Cheng-Wen Lin; Chih-Ho Lai; Hao-Teng Chang; Hsiu-Chuan Chou; Hong-Lin Chan
Trypsin-induced proteome alteration during cell subculture in mammalian cells.
Journal of biomedical science 2010;17():36.
2009: Ting Chen; Tian-Ren Lee; Wei-Guang Liang; Wun-Shaing Wayne Chang; Ping-Chiang Lyu
Identification of trypsin-inhibitory site and structure determination of human SPINK2 serine proteinase inhibitor.
Proteins 2009;77(1):209-19.
2009: Yi-Kun Chiang; Ching-Chuan Kuo; Yu-Shan Wu; Chung-Tong Chen; Mohane Coumar; Jian-Sung Wu; Hsing-Pang Hsieh; Chi-Yen Chang; Huan-Yi Jseng; Ming-Hsine Wu; Jiun-Shyang Leou; Jen-Shin Song; Jang-Yang Chang; Ping-Chiang Lyu; Yu-Sheng Chao; Su-Ying Wu
Generation of ligand-based pharmacophore model and virtual screening for identification of novel tubulin inhibitors with potent anticancer activity.
Journal of medicinal chemistry 2009;52(14):4221-33.
2009: Wei-Cheng Lo; Che-Yu Lee; Chi-Ching Lee; Ping-Chiang Lyu
iSARST: an integrated SARST web server for rapid protein structural similarity searches.
Nucleic acids research 2009;37(Web Server issue):W545-51.
2009: Allan Lo; Yi-Yuan Chiu; Einar Andreas Rødland; Ping-Chiang Lyu; Ting-Yi Sung; Wen-Lian Hsu
Predicting helix-helix interactions from residue contacts in membrane proteins.
Bioinformatics (Oxford, England) 2009;25(8):996-1003.
2008: Che-Jen Hsiao; Yunn-Fang Ho; John T-A Hsu; Wei-Ling Chang; Yi-Cheng Chen; Ya-Ching Shen; Ping-Chiang Lyu; Jih-Hwa Guh
Mana-Hox displays anticancer activity against prostate cancer cells through tubulin depolymerization and DNA damage stress.
Naunyn-Schmiedeberg's archives of pharmacology 2008;378(6):599-608.
2008: Cheng-Jen Liao; Ko-Hsin Chin; Chao-Hsiung Lin; Peter Shi-Fong Tsai; Ping-Chiang Lyu; Chiu-Chung Young; Andrew H-J Wang; Shan-Ho Chou
Crystal structure of DFA0005 complexed with alpha-ketoglutarate: a novel member of the ICL/PEPM superfamily from alkali-tolerant Deinococcus ficus.
Proteins 2008;73(2):362-71.
2008: Yen-Ting Lai; Chao-Sheng Cheng; Yu-Nan Liu; Yaw-Jen Liu; Ping-Chiang Lyu
Effects of ligand binding on the dynamics of rice nonspecific lipid transfer protein 1: a model from molecular simulations.
Proteins 2008;72(4):1189-98.
2008: Che-Jen Hsiao; Tsia-Kun Li; Ya-Ling Chan; Ling-Wei Hsin; Cho-Hwa Liao; Chien-Hua Lee; Ping-Chiang Lyu; Jih-Hwa Guh
WRC-213, an l-methionine-conjugated mitoxantrone derivative, displays anticancer activity with reduced cardiotoxicity and drug resistance: identification of topoisomerase II inhibition and apoptotic machinery in prostate cancers.
Biochemical pharmacology 2008;75(4):847-56.
2008: Chao-Sheng Cheng; Ming-Nan Chen; Yen-Ting Lai; Ting Chen; Ku-Feng Lin; Yaw-Jen Liu; Ping-Chiang Lyu
Mutagenesis study of rice nonspecific lipid transfer protein 2 reveals residues that contribute to structure and ligand binding.
Proteins 2008;70(3):695-706.
2008: Allan Lo; Hua-Sheng Chiu; Ting-Yi Sung; Ping-Chiang Lyu; Wen-Lian Hsu
Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.
Journal of proteome research 2008;7(2):487-96.
2008: Ying-Fang Yang; Min-Yuan Chou; Chia-Yu Fan; Sung-Fang Chen; Ping-Chiang Lyu; Chung-Cheng Liu; Tzu-Ling Tseng
The possible interaction of CDA14 and protein elongation factor 1alpha.
Biochimica et biophysica acta 2008;1784(2):312-8.
2008: Wei-Cheng Lo; Ping-Chiang Lyu
CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships.
Genome biology 2008;9(1):R11.
2007: Ssu-Chia Lin; Shih-Chieh Chueh; Che-Jen Hsiao; Tsia-Kun Li; Tzu-Hsuan Chen; Cho-Hwa Liao; Ping-Chiang Lyu; Jih-Hwa Guh
Prazosin displays anticancer activity against human prostate cancers: targeting DNA and cell cycle.
Neoplasia (New York, N.Y.) 2007;9(10):830-9.
2007: Ku-Feng Lin; Tian-Ren Lee; Ping-Hsing Tsai; Ming-Pin Hsu; Ching-San Chen; Ping-Chiang Lyu
Structure-based protein engineering for alpha-amylase inhibitory activity of plant defensin.
Proteins 2007;68(2):530-40.
2007: Yu-Nan Liu; Yen-Ting Lai; Wei-I Chou; Margaret Dah-Tsyr Chang; Ping-Chiang Lyu
Solution structure of family 21 carbohydrate-binding module from Rhizopus oryzae glucoamylase.
The Biochemical journal 2007;403(1):21-30.
2007: Wei-Cheng Lo; Po-Jung Huang; Chih-Hung Chang; Ping-Chiang Lyu
Protein structural similarity search by Ramachandran codes.
BMC bioinformatics 2007;8():307.
2007: Sz-Kai Ruan; Ko-Hsin Chin; Hui-Lin Shr; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Preliminary X-ray analysis of XC5848, a hypothetical ORFan protein with an Sm-like motif from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 1):30-3.
2006: Wen-Ting Lo; Ko-Hsin Chin; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Crystallization and preliminary X-ray analysis of XC1015, a histidine triad-like protein from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 12):1263-5.
2006: Meng-Ru Ho; Yuan-Chao Lou; Wen-Chang Lin; Ping-Chiang Lyu; Wei-Ning Huang; Chinpan Chen
Human pancreatitis-associated protein forms fibrillar aggregates with a native-like conformation.
The Journal of biological chemistry 2006;281(44):33566-76.
2006: Chien-Hung Lin; Ko-Hsin Chin; Fei Philip Gao; Ping-Chiang Lyu; Hui-Lin Shr; Andrew H-J Wang; Shan-Ho Chou
Cloning, crystallization and preliminary X-ray studies of XC2981 from Xanthomonas campestris, a putative CutA1 protein involved in copper-ion homeostasis.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 11):1113-5.
2006: Neeraj Mahindroo; Yi-Hui Peng; Chia-Hui Lin; Uan-Kang Tan; Ekambaranellore Prakash; Tzu-Wen Lien; I-Lin Lu; Hong-Jen Lee; John T A Hsu; Xin Chen; Chun-Chen Liao; Ping-Chiang Lyu; Yu-Sheng Chao; Su-Ying Wu; Hsing-Pang Hsieh
Structural basis for the structure-activity relationships of peroxisome proliferator-activated receptor agonists.
Journal of medicinal chemistry 2006;49(21):6421-4.
2006: Kuo-Cheng Chio; Ko-Hsin Chin; Fei Philip Gao; Ping-Chiang Lyu; Hui-Lin Shr; Andrew H-J Wang; Shan-Ho Chou
The cloning, crystallization and preliminary X-ray analysis of XC2113, a YaeQ protein from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 10):1046-8.
2006: Ying-Der Tsai; Ko-Hsin Chin; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 10):999-1002.
2006: I-Chen Hu; Tian-Ren Lee; Hui-Fen Lin; Chuang-Chun Chiueh; Ping-Chiang Lyu
Biosynthesis of fluorescent allophycocyanin alpha-subunits by autocatalytic bilin attachment.
Biochemistry 2006;45(23):7092-9.
2006: Yaw-Jen Liu; Chao-Sheng Cheng; Szu-Ming Lai; Ming-Pin Hsu; Ching-San Chen; Ping-Chiang Lyu
Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids.
Proteins 2006;63(4):777-86.
2006: Jia-Yin Tsai; Bo-Tsang Chen; Hui-Chun Cheng; Hsin-Yi Chen; Nai-Wan Hsaio; Ping-Chiang Lyu; Yuh-Ju Sun
Crystal structure of HP0242, a hypothetical protein from Helicobacter pylori with a novel fold.
Proteins 2006;62(4):1138-43.
2006: Cheng-Wen Lin; Kuan-Hsun Lin; Ping-Chiang Lyu; Wei-June Chen
Japanese encephalitis virus NS2B-NS3 protease binding to phage-displayed human brain proteins with the domain of trypsin inhibitor and basic region leucine zipper.
Virus research 2006;116(1-2):106-13.
2006: Neeraj Mahindroo; Chiung-Chiu Wang; Chun-Chen Liao; Chien-Fu Huang; I-Lin Lu; Tzu-Wen Lien; Yi-Hui Peng; Wei-Jan Huang; Ying-Ting Lin; Ming-Chu Hsu; Chia-Hui Lin; Chia-Hua Tsai; John T A Hsu; Xin Chen; Ping-Chiang Lyu; Yu-Sheng Chao; Su-Ying Wu; Hsing-Pang Hsieh
Indol-1-yl acetic acids as peroxisome proliferator-activated receptor agonists: design, synthesis, structural biology, and molecular docking studies.
Journal of medicinal chemistry 2006;49(3):1212-6.
2005: Yan-You Wu; Ko-Hsin Chin; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 10):902-5.
2005: Zhi-Le Tu; Juo-Ning Li; Ko-Hsin Chin; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Ping-Chiang Lyu; Fei Philip Gao; Andrew H-J Wang; Shan-Ho Chou
Cloning, expression, crystallization and preliminary X-ray analysis of a putative multiple antibiotic resistance repressor protein (MarR) from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):706-8.
2005: Chao-Yu Yang; Ko-Hsin Chin; Chia-Cheng Chou; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Cloning, purification crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC6422 from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):703-5.
2005: Ko-Hsin Chin; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Preparation, crystallization and preliminary X-ray analysis of XC2382, an ApaG protein of unknown structure from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):700-2.
2005: Chiao-Li Chu; Ko-Hsin Chin; Fu-Yang Lin; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
A putative polyketide-synthesis protein XC5357 from Xanthomonas campestris: heterologous expression, crystallization and preliminary X-ray analysis.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):697-9.
2005: Ko-Hsin Chin; Wei-Tien Kuo; Chia-Cheng Chou; Hui-Lin Shr; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Cloning, purification, crystallization and preliminary X-ray analysis of XC229, a conserved hypothetical protein from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):694-6.
2005: Ko-Hsin Chin; Zhao-Wei Huang; Kun-Chou Wei; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Preparation, crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC1692 from Xanthomonas campestris.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):691-3.
2005: Ku-Feng Lin; Yu-Nan Liu; Shang-Te Danny Hsu; Dharmaraj Samuel; Chao-Sheng Cheng; Alexandre Bonvin; Ping-Chiang Lyu
Characterization and structural analyses of nonspecific lipid transfer protein 1 from mung bean.
Biochemistry 2005;44(15):5703-12.
2005: I-Chen Tsai; Ya-Ju Hsieh; Ping-Chiang Lyu; Jau-Song Yu
Anti-phosphopeptide antibody, P-STM as a novel tool for detecting mitotic phosphoproteins: identification of lamins A and C as two major targets.
Journal of cellular biochemistry 2005;94(5):967-81.
2005: Ko-Hsin Chin; Fu-Yang Lin; Yu-Chen Hu; Kong Hung SZE; Ping-Chiang Lyu; Shan-Ho Chou
NMR structure note--solution structure of a bacterial BolA-like protein XC975 from a plant pathogen Xanthomonas campestris pv. campestris.
Journal of biomolecular NMR 2005;31(2):167-72.
2004: Chen-Hsiung Chan; Han-Kuen Liang; Nai-Wan Hsiao; Ming-Tat Ko; Ping-Chiang Lyu; Jenn-Kang Hwang
Relationship between local structural entropy and protein thermostability.
Proteins 2004;57(4):684-91.
2004: Chao-Sheng Cheng; Dharmaraj Samuel; Yaw-Jen Liu; Je-Chyi Shyu; Szu-Ming Lai; Ku-Feng Lin; Ping-Chiang Lyu
Binding mechanism of nonspecific lipid transfer proteins and their role in plant defense.
Biochemistry 2004;43(43):13628-36.
2004: Meng-Ru Ho; Yuan-Chao Lou; Wen-Chang Lin; Ping-Chiang Lyu; Chinpan Chen
(1)H, (13)C, and (15)N resonance assignments and secondary structure of human pancreatitis-associated protein (hPAP).
Journal of biomolecular NMR 2004;30(3):381-2.
2004: Chi-Hung Lin; Li Li; Ping-Chiang Lyu; Jui-Yoa Chang
Distinct unfolding and refolding pathways of lipid transfer proteins LTP1 and LTP2.
The protein journal 2004;23(8):553-66.
2004: Hui-Chun Cheng; Pei-Tsung Cheng; Peiyu Peng; Ping-Chiang Lyu; Yuh-Ju Sun
Lipid binding in rice nonspecific lipid transfer protein-1 complexes from Oryza sativa.
Protein science : a publication of the Protein Society 2004;13(9):2304-15.
2004: Sheng-Fen Hsueh; C-Y Lu; Chien-Shun Chao; P-H Tan; Y-W Huang; S-W Hsieh; H-T Hsiao; N-C Chung; S-H Lin; P-L Huang; Ping-Chiang Lyu; L-C Yang
Nonsteroidal anti-inflammatory drugs increase expression of inducible COX-2 isoform of cyclooxygenase in spinal cord of rats with adjuvant induced inflammation.
Brain research. Molecular brain research 2004;125(1-2):113-9.
2004: Hong-Chong Liu; Ping-Chiang Lyu; Max K Leong; Keng-Chang Tsai; Ging-Ho Hsiue
3D-QSAR studies on PU3 analogues by comparative molecular field analysis.
Bioorganic & medicinal chemistry letters 2004;14(3):731-4.
2003: Cheng Wei Wu; Gurunathan Jayaraman; Kun-Yi Chien; Yaw-Jen Liu; Ping-Chiang Lyu
Influence of peptide conformation on oligosaccharide binding characteristics--a study using apamin-based chimeric peptide.
Peptides 2003;24(12):1853-61.
2003: Chao-Chun Chuang; Chun-Yin Chen; Jinn-Moon Yang; Ping-Chiang Lyu; Jenn-Kang Hwang
Relationship between protein structures and disulfide-bonding patterns.
Proteins 2003;53(1):1-5.
2003: Nai-Wan Hsiao; Dharmaraj Samuel; Yu-Nan Liu; Li-Chuan Chen; Tzu-Ying Yang; Gurunathan Jayaraman; Ping-Chiang Lyu
Mutagenesis study on the zebra fish SOX9 high-mobility group: comparison of sequence and non-sequence specific HMG domains.
Biochemistry 2003;42(38):11183-93.
2003: Chin-Sheng Yu; Jung-Ying Wang; Jinn-Moon Yang; Ping-Chiang Lyu; Chih-Jen Lin; Jenn-Kang Hwang
Fine-grained protein fold assignment by support vector machines using generalized npeptide coding schemes and jury voting from multiple-parameter sets.
Proteins 2003;50(4):531-6.
2002: Dharmaraj Samuel; Yaw-Jen Liu; Chao-Sheng Cheng; Ping-Chiang Lyu
Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa).
The Journal of biological chemistry 2002;277(38):35267-73.
2002: Yaw-Jen Liu; Dharmaraj Samuel; Chi-Hung Lin; Ping-Chiang Lyu
Purification and characterization of a novel 7-kDa non-specific lipid transfer protein-2 from rice (Oryza sativa).
Biochemical and biophysical research communications 2002;294(3):535-40.
2000: Gurunathan Jayaraman; C W Wu; Yaw-Jen Liu; Kun-Yi Chien; J C Fang; Ping-Chiang Lyu
Binding of a de novo designed peptide to specific glycosaminoglycans.
FEBS letters 2000;482(1-2):154-8.
1999: C H Lin; F C Chan; J K Hwang; Ping-Chiang Lyu
Calcium binding mode of gamma-carboxyglutamic acids in conantokins.
Protein engineering 1999;12(7):589-95.
1997: C H Hsieh; Shih-Che Sue; Ping-Chiang Lyu; Wen-guey Wu
Membrane packing geometry of diphytanoylphosphatidylcholine is highly sensitive to hydration: phospholipid polymorphism induced by molecular rearrangement in the headgroup region.
Biophysical journal 1997;73(2):870-7.
1997: C H Lin; C S Chen; Kuei-Sen Hsu; D S King; Ping-Chiang Lyu
Role of modified glutamic acid in the helical structure of conantokin-T.
FEBS letters 1997;407(2):243-8.
1997: Chiung-Chun Huang; Ping-Chiang Lyu; C H Lin; Kuei-Sen Hsu
Conantokin-T selectively antagonizes N-methyl-D-aspartate-evoked responses in rat hippocampal slice.
Toxicon : official journal of the International Society on Toxinology 1997;35(3):355-63.
1996: Kuei-Sen Hsu; C C Huang; Ping-Chiang Lyu
Inhibition of calcium channels in rat hippocampal CA1 neurons by conantokin-T.
Neuroscience letters 1996;220(2):113-6.
1996: Y J Chen; S C Lin; Shiou-Ru Tzeng; Himatkumar V Patel; Ping-Chiang Lyu; Jya-Wei Cheng
Stability and folding of the SH3 domain of Bruton's tyrosine kinase.
Proteins 1996;26(4):465-71.
1996: Jya-Wei Cheng; C C Cheng; Ping-Chiang Lyu; S T Chen; T H Lin
Solution conformation of a peptide corresponding to residues 151-172 of HIV-1 integrase using NMR and CD spectroscopy.
International journal of peptide and protein research 1996;47(1-2):117-22.