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Yuri Lyubchenko

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Sandor Lovas; Junping Yu; Yuliang Zhang; Yuri L Lyubchenko
Molecular mechanism of misfolding and aggregation of aβ(13-23).
Zhengjian Lv; Margaret M Condron; David B Teplow; Yuri L Lyubchenko
Nanoprobing of the effect of Cu(2+) cations on misfolding, interaction and aggregation of amyloid β peptide.
Nitin Bansal; Ronald Berezney; Aishwarya Bhaskar; Andrew Fritz; Patrick Itotia; Tukiet T Lam; EunHee Lee; Yuri L Lyubchenko; Lyudmila S Shlyakhtenko; Walter F Stafford; Minyou Zhang; Roopa Thapar
Assembly of the SLIP1-SLBP complex on histone mRNA requires heterodimerization and sequential binding of SLBP followed by SLIP1.

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All Publications

2013: Sandor Lovas; Junping Yu; Yuliang Zhang; Yuri L Lyubchenko
Molecular mechanism of misfolding and aggregation of aβ(13-23).
The journal of physical chemistry. B 2013;117(20):6175-86.
2013: Zhengjian Lv; Margaret M Condron; David B Teplow; Yuri L Lyubchenko
Nanoprobing of the effect of Cu(2+) cations on misfolding, interaction and aggregation of amyloid β peptide.
Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology 2013;8(1):262-73.
2013: Nitin Bansal; Ronald Berezney; Aishwarya Bhaskar; Andrew Fritz; Patrick Itotia; Tukiet T Lam; EunHee Lee; Yuri L Lyubchenko; Lyudmila S Shlyakhtenko; Walter F Stafford; Minyou Zhang; Roopa Thapar
Assembly of the SLIP1-SLBP complex on histone mRNA requires heterodimerization and sequential binding of SLBP followed by SLIP1.
Biochemistry 2013;52(3):520-36.
2013: Luda S Shlyakhtenko; Alexander A Gall; Yuri L Lyubchenko
Mica functionalization for imaging of DNA and protein-DNA complexes with atomic force microscopy.
Methods in molecular biology (Clifton, N.J.) 2013;931():295-312.
2012: Luda S Shlyakhtenko; Atsushi Miyagi; Reuben S Harris; Ming Li; Alexander Y Lushnikov; Yuri L Lyubchenko
Nanoscale structure and dynamics of ABOBEC3G complexes with single-stranded DNA.
Biochemistry 2012;51(32):6432-40.
2012: Alexander M Portillo; Alexey V Krasnoslobodtsev; Yuri L Lyubchenko
Effect of electrostatics on aggregation of prion protein Sup35 peptide.
Journal of physics. Condensed matter : an Institute of Physics journal 2012;24(16):164205.
2012: Luda S Shlyakhtenko; Atsushi Miyagi; Alexander Y Lushnikov; Yuri L Lyubchenko
Specificity of binding of single-stranded DNA-binding protein to its target.
Biochemistry 2012;51(7):1500-9.
2012: Yuri L Lyubchenko; Alexey V Krasnoslobodtsev; Sorin Luca
Fibrillogenesis of huntingtin and other glutamine containing proteins.
Sub-cellular biochemistry 2012;65():225-51.
2012: Alexey V Krasnoslobodtsev; Josephat M Asiago; Jagadish Hindupur; Jie Peng; Jean-Christophe Rochet; Yuri L Lyubchenko
Effect of spermidine on misfolding and interactions of alpha-synuclein.
PloS one 2012;7(5):e38099.
2012: Nina A Filenko; Dmytro B Palets; Yuri L Lyubchenko
Structure and dynamics of dinucleosomes assessed by atomic force microscopy.
Journal of amino acids 2012;2012():650840.
2011: Atsushi Miyagi; Toshio Ando; Yuri L Lyubchenko
Dynamics of nucleosomes assessed with time-lapse high-speed atomic force microscopy.
Biochemistry 2011;50(37):7901-8.
2011: Bo-Hyun Kim; Sandor Lovas; Nicholas Y Palermo; Tatiana Zaikova; John F W Keana; Yuri L Lyubchenko
Single-molecule atomic force microscopy force spectroscopy study of Aβ-40 interactions.
Biochemistry 2011;50(23):5154-62.
2011: Yuri L Lyubchenko; Luda S Shlyakhtenko; Toshio Ando
Imaging of nucleic acids with atomic force microscopy.
Methods (San Diego, Calif.) 2011;54(2):274-83.
2011: Junping Yu; Julia Warnke; Yuri L Lyubchenko
Nanoprobing of α-synuclein misfolding and aggregation with atomic force microscopy.
Nanomedicine : nanotechnology, biology, and medicine 2011;7(2):146-52.
2011: Luda S Shlyakhtenko; Alexander Y Lushnikov; Ming Li; Lela Lackey; Reuben S Harris; Yuri L Lyubchenko
Atomic force microscopy studies provide direct evidence for dimerization of the HIV restriction factor APOBEC3G.
The Journal of biological chemistry 2011;286(5):3387-95.
2011: Yuri L Lyubchenko
Preparation of DNA and nucleoprotein samples for AFM imaging.
Micron (Oxford, England : 1993) 2011;42(2):196-206.
2011: Nina A Filenko; Carol Kolar; John T West; S Abbie Smith; Yousef I Hassan; Gloria E O Borgstahl; Janos Zempleni; Yuri L Lyubchenko
The role of histone H4 biotinylation in the structure of nucleosomes.
PloS one 2011;6(1):e16299.
2010: Mindaugas Zaremba; Amelia Owsicka; Gintautas Tamulaitis; Giedrius Sasnauskas; Luda S Shlyakhtenko; Alexander Y Lushnikov; Yuri L Lyubchenko; Niels Laurens; Bram van den Broek; Gijs J L Wuite; Virginijus Siksnys
DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme.
Nucleic acids research 2010;38(20):7142-54.
2010: Alexey V Krasnoslobodtsev; Alexander M Portillo; Tanja Deckert-Gaudig; Volker Deckert; Yuri L Lyubchenko
Nanoimaging for prion related diseases.
Prion 2010;4(4):265-74.
2010: Dmytro Palets; Alexander Y Lushnikov; Mikhail A Karymov; Yuri L Lyubchenko
Effect of single-strand break on branch migration and folding dynamics of Holliday junctions.
Biophysical journal 2010;99(6):1916-24.
2010: Yuri L Lyubchenko; Bo-Hyun Kim; Alexey V Krasnoslobodtsev; Junping Yu
Nanoimaging for protein misfolding diseases.
Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology 2010;2(5):526-43.
2009: Jamie L Gilmore; Yuki Suzuki; Gintautas Tamulaitis; Virginijus Siksnys; Kunio Takeyasu; Yuri L Lyubchenko
Single-molecule dynamics of the DNA-EcoRII protein complexes revealed with high-speed atomic force microscopy.
Biochemistry 2009;48(44):10492-8.
2009: Luda S Shlyakhtenko; Alexander Y Lushnikov; Yuri L Lyubchenko
Dynamics of nucleosomes revealed by time-lapse atomic force microscopy.
Biochemistry 2009;48(33):7842-8.
2009: Luda S Shlyakhtenko; Jamie Gilmore; Aleksei N Kriatchko; Sushil Kumar; Patrick C Swanson; Yuri L Lyubchenko
Molecular mechanism underlying RAG1/RAG2 synaptic complex formation.
The Journal of biological chemistry 2009;284(31):20956-65.
2009: Yuri L Lyubchenko; Luda S Shlyakhtenko
AFM for analysis of structure and dynamics of DNA and protein-DNA complexes.
Methods (San Diego, Calif.) 2009;47(3):206-13.
2009: Junping Yu; Yuri L Lyubchenko
Early stages for Parkinson's development: alpha-synuclein misfolding and aggregation.
Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology 2009;4(1):10-6.
2009: Yuri L Lyubchenko; Luda S Shlyakhtenko; Alexander A Gall
Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: silatrane surface chemistry.
Methods in molecular biology (Clifton, N.J.) 2009;543():337-51.
2009: Alexander Rubinstein; Yuri L Lyubchenko; Simon Sherman
Dynamic properties of pH-dependent structural organization of the amyloidogenic beta-protein (1-40).
Prion 2009;3(1):31-43.
2008: Junping Yu; Sarka Malkova; Yuri L Lyubchenko
alpha-Synuclein misfolding: single molecule AFM force spectroscopy study.
Journal of molecular biology 2008;384(4):992-1001.
2008: Mikhail A Karymov; Mathivanan Chinnaraj; Aleksey Bogdanov; Annankoil R Srinivasan; Guohui Zheng; Wilma K Olson; Yuri L Lyubchenko
Structure, dynamics, and branch migration of a DNA Holliday junction: a single-molecule fluorescence and modeling study.
Biophysical journal 2008;95(9):4372-83.
2008: Jeffrey W Pavlicek; Yuri L Lyubchenko; Yung Chang
Quantitative analyses of RAG-RSS interactions and conformations revealed by atomic force microscopy.
Biochemistry 2008;47(43):11204-11.
2008: Mikhail A Karymov; Alexey Bogdanov; Yuri L Lyubchenko
Single molecule fluorescence analysis of branch migration of holliday junctions: effect of DNA sequence.
Biophysical journal 2008;95(3):1239-47.
2008: Igor B Nazarov; Luda S Shlyakhtenko; Yuri L Lyubchenko; Irina A Zalenskaya; Andrei O Zalensky
Sperm chromatin released by nucleases.
Systems biology in reproductive medicine 2008;54(1):37-46.
2007: Chiming Wei; Nanhai Liu; Pingyi Xu; Mike Heller; Donald A Tomalia; Donald T Haynie; Esther H Chang; Kuan Wang; Yoon-Sik Lee; Yuri L Lyubchenko; Raj Bawa; Ryan Tian; Justin Hanes; Suzie Pun; Jens-Christian Meiners; Peixuan Guo
From bench to bedside: successful translational nanomedicine: highlights of the Third Annual Meeting of the American Academy of Nanomedicine.
Nanomedicine : nanotechnology, biology, and medicine 2007;3(4):322-31.
2007: Luda S Shlyakhtenko; Jamie Gilmore; Alex Portillo; Gintautas Tamulaitis; Virginijus Siksnys; Yuri L Lyubchenko
Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy.
Biochemistry 2007;46(39):11128-36.
2007: Dong Wang; Scott C Miller; Luda S Shlyakhtenko; Alexander M Portillo; Xin-Ming Liu; Kongnara Papangkorn; Pavla Kopecková; Yuri L Lyubchenko; William I Higuchi; Jindrich Kopecek
Osteotropic Peptide that differentiates functional domains of the skeleton.
Bioconjugate chemistry 2007;18(5):1375-8.
2007: Luda S Shlyakhtenko; Bin Yuan; Sharareh Emadi; Yuri L Lyubchenko; Michael R Sierks
Single-molecule selection and recovery of structure-specific antibodies using atomic force microscopy.
Nanomedicine : nanotechnology, biology, and medicine 2007;3(3):192-7.
2007: Mikhail A Karymov; Alexey V Krasnoslobodtsev; Yuri L Lyubchenko
Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis.
Biophysical journal 2007;92(9):3241-50.
2007: Alexey V Krasnoslobodtsev; Luda S Shlyakhtenko; Yuri L Lyubchenko
Probing Interactions within the synaptic DNA-SfiI complex by AFM force spectroscopy.
Journal of molecular biology 2007;365(5):1407-16.
2007: James R Walker; Annie J Gnanam; Alexandra Blinkova; Mary Jo Hermandson; Mikhail A Karymov; Yuri L Lyubchenko; Paul R Graves; Timothy A J Haystead; Klaus D Linse
Clostridium taeniosporum spore ribbon-like appendage structure, composition and genes.
Molecular microbiology 2007;63(3):629-43.
2006: Chiming Wei; Yuri L Lyubchenko; Hamid Ghandehari; Justin Hanes; Kathleen J Stebe; Hai-Quan Mao; Donald T Haynie; Donald A Tomalia; Marianna Foldvari; Nancy A Monteiro-Riviere; Petia P Simeonova; Shuming Nie; Hidezo Mori; Susan P Gilbert; David Needham
New technology and clinical applications of nanomedicine: highlights of the second annual meeting of the American Academy of Nanomedicine (Part I).
Nanomedicine : nanotechnology, biology, and medicine 2006;2(4):253-63.
2006: Andrey L Mikheikin; Alexander Y Lushnikov; Yuri L Lyubchenko
Effect of DNA supercoiling on the geometry of holliday junctions.
Biochemistry 2006;45(43):12998-3006.
2006: Vladimir Uversky; Alexander Kabanov; Yuri L Lyubchenko
Nanotools for megaproblems: probing protein misfolding diseases using nanomedicine modus operandi.
Journal of proteome research 2006;5(10):2505-22.
2006: Yuri L Lyubchenko; Simon Sherman; Luda S Shlyakhtenko; Vladimir Uversky
Nanoimaging for protein misfolding and related diseases.
Journal of cellular biochemistry 2006;99(1):52-70.
2006: Alexandre A Vetcher; Alexander Y Lushnikov; Junalyn Navarra-Madsen; Robert G Scharein; Yuri L Lyubchenko; Isabel K Darcy; Stephen D Levene
DNA topology and geometry in Flp and Cre recombination.
Journal of molecular biology 2006;357(4):1089-104.
2006: Alexander Y Lushnikov; Vladimir N Potaman; Elena A Oussatcheva; Richard R Sinden; Yuri L Lyubchenko
DNA strand arrangement within the SfiI-DNA complex: atomic force microscopy analysis.
Biochemistry 2006;45(1):152-8.
2006: Alexander Y Lushnikov; Vladimir N Potaman; Yuri L Lyubchenko
Site-specific labeling of supercoiled DNA.
Nucleic acids research 2006;34(16):e111.
2005: Chad McAllister; Mikhail A Karymov; Yoshiko Kawano; Alexander Y Lushnikov; Andrew Mikheikin; Vladimir Uversky; Yuri L Lyubchenko
Protein interactions and misfolding analyzed by AFM force spectroscopy.
Journal of molecular biology 2005;354(5):1028-42.
2005: Alexey V Kransnoslobodtsev; Luda S Shlyakhtenko; Egor Ukraintsev; Tatiana O Zaikova; John F W Keana; Yuri L Lyubchenko
Nanomedicine and protein misfolding diseases.
Nanomedicine : nanotechnology, biology, and medicine 2005;1(4):300-5.
2005: Desiree Watson; Eduardo M Castaño; Tyler A Kokjohn; Yu-Min Kuo; Yuri L Lyubchenko; David J Pinsky; E Sander Connolly; Chera Esh; Dean C Luehrs; W Blaine Stine; Linda M Rowse; Mark Emmerling; Alex Roher
Physicochemical characteristics of soluble oligomeric Abeta and their pathologic role in Alzheimer's disease.
Neurological research 2005;27(8):869-81.
2005: Ghiam Yamin; Larissa A Munishkina; Mikhail A Karymov; Yuri L Lyubchenko; Vladimir Uversky; Anthony L Fink
Forcing nonamyloidogenic beta-synuclein to fibrillate.
Biochemistry 2005;44(25):9096-107.
2005: Mikhail A Karymov; Douglas Daniel; Otto F Sankey; Yuri L Lyubchenko
Holliday junction dynamics and branch migration: single-molecule analysis.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(23):8186-91.
2005: Paul R Dahlgren; Mikhail A Karymov; John Bankston; Tina Holden; Peter Thumfort; Vernon M Ingram; Yuri L Lyubchenko
Atomic force microscopy analysis of the Huntington protein nanofibril formation.
Disease-a-month : DM 2005;51(6):374-85.
2005: Vladimir N Potaman; Luda S Shlyakhtenko; Elena A Oussatcheva; Yuri L Lyubchenko; Viatcheslav A Soldatenkov
Specific binding of poly(ADP-ribose) polymerase-1 to cruciform hairpins.
Journal of molecular biology 2005;348(3):609-15.
2005: Irina Lonskaya; Vladimir N Potaman; Luda S Shlyakhtenko; Elena A Oussatcheva; Yuri L Lyubchenko; Viatcheslav A Soldatenkov
Regulation of poly(ADP-ribose) polymerase-1 by DNA structure-specific binding.
The Journal of biological chemistry 2005;280(17):17076-83.
2005: Chiara Spagnoli; Alexander Korniakov; Abraham Ulman; Endre Balazs; Yuri L Lyubchenko; Mary K Cowman
Hyaluronan conformations on surfaces: effect of surface charge and hydrophobicity.
Carbohydrate research 2005;340(5):929-41.
2005: Vladimir Uversky; Ghiam Yamin; Larissa A Munishkina; Mikhail A Karymov; Ian S Millett; Sebastian Doniach; Yuri L Lyubchenko; Anthony L Fink
Effects of nitration on the structure and aggregation of alpha-synuclein.
Brain research. Molecular brain research 2005;134(1):84-102.
2005: Paul R Dahlgren; Mikhail A Karymov; John Bankston; Tina Holden; Peter Thumfort; Vernon M Ingram; Yuri L Lyubchenko
Atomic force microscopy analysis of the Huntington protein nanofibril formation.
Nanomedicine : nanotechnology, biology, and medicine 2005;1(1):52-7.
2004: Jeffrey W Pavlicek; Elena A Oussatcheva; Richard R Sinden; Vladimir N Potaman; Otto F Sankey; Yuri L Lyubchenko
Supercoiling-induced DNA bending.
Biochemistry 2004;43(33):10664-8.
2004: Ruitian Liu; Chad McAllister; Yuri L Lyubchenko; Michael R Sierks
Proteolytic antibody light chains alter beta-amyloid aggregation and prevent cytotoxicity.
Biochemistry 2004;43(31):9999-10007.
2004: Ruitian Liu; Bin Yuan; Sharareh Emadi; Andleeb Zameer; Philip Schulz; Chad McAllister; Yuri L Lyubchenko; Gaddam Goud; Michael R Sierks
Single chain variable fragments against beta-amyloid (Abeta) can inhibit Abeta aggregation and prevent abeta-induced neurotoxicity.
Biochemistry 2004;43(22):6959-67.
2004: Elena A Oussatcheva; Jeffrey Pavlicek; Otto F Sankey; Richard R Sinden; Yuri L Lyubchenko; Vladimir N Potaman
Influence of global DNA topology on cruciform formation in supercoiled DNA.
Journal of molecular biology 2004;338(4):735-43.
2004: Sharareh Emadi; Ruitian Liu; Bin Yuan; Philip Schulz; Chad McAllister; Yuri L Lyubchenko; Anne Messer; Michael R Sierks
Inhibiting aggregation of alpha-synuclein with human single chain antibody fragments.
Biochemistry 2004;43(10):2871-8.
2004: Ruitian Liu; Chad McAllister; Yuri L Lyubchenko; Michael R Sierks
Residues 17-20 and 30-35 of beta-amyloid play critical roles in aggregation.
Journal of neuroscience research 2004;75(2):162-71.
2004: Yuri L Lyubchenko
DNA structure and dynamics: an atomic force microscopy study.
Cell biochemistry and biophysics 2004;41(1):75-98.
2004: Alexander Y Lushnikov; Bernard A Brown; Elena A Oussatcheva; Vladimir N Potaman; Richard R Sinden; Yuri L Lyubchenko
Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy.
Nucleic acids research 2004;32(15):4704-12.
2004: Vladimir N Potaman; Elena A Oussatcheva; Yuri L Lyubchenko; Luda S Shlyakhtenko; S I Bidichandani; Tetsuo Ashizawa; Richard R Sinden
Length-dependent structure formation in Friedreich ataxia (GAA)n*(TTC)n repeats at neutral pH.
Nucleic acids research 2004;32(3):1224-31.
2003: Konstantin Virnik; Yuri L Lyubchenko; Mikhail A Karymov; Paul Dahlgren; Michael Y Tolstorukov; Szabolcs Semsey; Victor B Zhurkin; Sankar Adhya
"Antiparallel" DNA loop in gal repressosome visualized by atomic force microscopy.
Journal of molecular biology 2003;334(1):53-63.
2003: Alexander Y Lushnikov; Alexey Bogdanov; Yuri L Lyubchenko
DNA recombination: holliday junctions dynamics and branch migration.
The Journal of biological chemistry 2003;278(44):43130-4.
2003: Luda S Shlyakhtenko; Alexander A Gall; Alexander Filonov; Zoran Cerovac; Alexander Y Lushnikov; Yuri L Lyubchenko
Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials.
Ultramicroscopy 2003;97(1-4):279-87.
2003: Luda S Shlyakhtenko; Lela Miloseska; Vladimir N Potaman; Richard R Sinden; Yuri L Lyubchenko
Intersegmental interactions in supercoiled DNA: atomic force microscope study.
Ultramicroscopy 2003;97(1-4):263-70.
2003: Mikio Kato; Shingo Hokabe; Shuji Itakura; Shinsei Minoshima; Yuri L Lyubchenko; Theodor D Gurkov; Hiroshi Okawara; Kuniaki Nagayama; Nobuyoshi Shimizu
Interarm interaction of DNA cruciform forming at a short inverted repeat sequence.
Biophysical journal 2003;85(1):402-8.
2003: Vladimir N Potaman; John J Bissler; Vera I Hashem; Elena A Oussatcheva; Lu Lu; Luda S Shlyakhtenko; Yuri L Lyubchenko; Tohru Matsuura; Tetsuo Ashizawa; Michael Leffak; Craig J Benham; Richard R Sinden
Unpaired structures in SCA10 (ATTCT)n.(AGAAT)n repeats.
Journal of molecular biology 2003;326(4):1095-111.
2002: Claire Gaillard; Luda S Shlyakhtenko; Yuri L Lyubchenko; François Strauss
Structural analysis of hemicatenated DNA loops.
BMC structural biology 2002;2():7.
2002: Yuri L Lyubchenko; Luda S Shlyakhtenko; Melinda Binus; Claire Gaillard; François Strauss
Visualization of hemiknot DNA structure with an atomic force microscope.
Nucleic acids research 2002;30(22):4902-9.
2002: Vladimir N Potaman; Alexander Y Lushnikov; Richard R Sinden; Yuri L Lyubchenko
Site-specific labeling of supercoiled DNA at the A+T rich sequences.
Biochemistry 2002;41(44):13198-206.
2002: Paul R Dahlgren; Yuri L Lyubchenko
Atomic force microscopy study of the effects of Mg(2+) and other divalent cations on the end-to-end DNA interactions.
Biochemistry 2002;41(38):11372-8.
2002: Mikio Kato; Chad J McAllister; Shingo Hokabe; Nobuyoshi Shimizu; Yuri L Lyubchenko
Structural heterogeneity of pyrimidine/purine-biased DNA sequence analyzed by atomic force microscopy.
European journal of biochemistry / FEBS 2002;269(15):3632-6.
2002: Jiya G Yodh; Neal W Woodbury; Luda S Shlyakhtenko; Yuri L Lyubchenko; D Lohr
Mapping nucleosome locations on the 208-12 by AFM provides clear evidence for cooperativity in array occupation.
Biochemistry 2002;41(11):3565-74.
2002: Richard R Sinden; Vladimir N Potaman; Elena A Oussatcheva; Christopher E Pearson; Yuri L Lyubchenko; Luda S Shlyakhtenko
Triplet repeat DNA structures and human genetic disease: dynamic mutations from dynamic DNA.
Journal of biosciences 2002;27(1 Suppl 1):53-65.
2001: Ralph Bash; Jiya G Yodh; Yuri L Lyubchenko; Neal W Woodbury; D Lohr
Population analysis of subsaturated 172-12 nucleosomal arrays by atomic force microscopy detects nonrandom behavior that is favored by histone acetylation and short repeat length.
The Journal of biological chemistry 2001;276(51):48362-70.
2001: W J Tiner; Vladimir N Potaman; Richard R Sinden; Yuri L Lyubchenko
The structure of intramolecular triplex DNA: atomic force microscopy study.
Journal of molecular biology 2001;314(3):353-7.
2001: Yuri L Lyubchenko; Alexander A Gall; Luda S Shlyakhtenko
Atomic force microscopy of DNA and protein-DNA complexes using functionalized mica substrates.
Methods in molecular biology (Clifton, N.J.) 2001;148():569-78.
2000: Luda S Shlyakhtenko; Vladimir N Potaman; Richard R Sinden; Alexander A Gall; Yuri L Lyubchenko
Structure and dynamics of three-way DNA junctions: atomic force microscopy studies.
Nucleic acids research 2000;28(18):3472-7.
2000: Luda S Shlyakhtenko; Peggy Hsieh; M Grigoriev; Vladimir N Potaman; Richard R Sinden; Yuri L Lyubchenko
A cruciform structural transition provides a molecular switch for chromosome structure and dynamics.
Journal of molecular biology 2000;296(5):1169-73.
1999: Jiya G Yodh; Yuri L Lyubchenko; Luda S Shlyakhtenko; Neal W Woodbury; D Lohr
Evidence for nonrandom behavior in 208-12 subsaturated nucleosomal array populations analyzed by AFM.
Biochemistry 1999;38(48):15756-63.
1999: Elena A Oussatcheva; Luda S Shlyakhtenko; R Glass; Richard R Sinden; Yuri L Lyubchenko; Vladimir N Potaman
Structure of branched DNA molecules: gel retardation and atomic force microscopy studies.
Journal of molecular biology 1999;292(1):75-86.
1999: Luda S Shlyakhtenko; Alexander A Gall; J J Weimer; D D Hawn; Yuri L Lyubchenko
Atomic force microscopy imaging of DNA covalently immobilized on a functionalized mica substrate.
Biophysical journal 1999;77(1):568-76.
1998: A Herbert; Markus Schade; Ky Lowenhaupt; J Alfken; thomas schwartz; Luda S Shlyakhtenko; Yuri L Lyubchenko; Alexander Rich
The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences.
Nucleic acids research 1998;26(15):3486-93.
1998: Luda S Shlyakhtenko; Vladimir N Potaman; Richard R Sinden; Yuri L Lyubchenko
Structure and dynamics of supercoil-stabilized DNA cruciforms.
Journal of molecular biology 1998;280(1):61-72.
1997: Yuri L Lyubchenko; Luda S Shlyakhtenko; T Aki; S Adhya
Atomic force microscopic demonstration of DNA looping by GalR and HU.
Nucleic acids research 1997;25(4):873-6.
1997: Yuri L Lyubchenko; Luda S Shlyakhtenko
Visualization of supercoiled DNA with atomic force microscopy in situ.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(2):496-501.
1996: D Rekesh; Yuri L Lyubchenko; Luda S Shlyakhtenko; Stuart Lindsey
Scanning tunneling microscopy of mercapto-hexyl-oligonucleotides attached to gold.
Biophysical journal 1996;71(2):1079-86.
1996: Yuri L Lyubchenko; R E Blankenship; A A Gall; Stuart Lindsey; O Thiemann; L Simpson; Luda S Shlyakhtenko
Atomic force microscopy of DNA, nucleoproteins and cellular complexes: the use of functionalized substrates.
Scanning microscopy. Supplement 1996;10():97-107; discussion 107-9.
1995: Yuri L Lyubchenko; Bertram L Jacobs; Stuart Lindsey; A Stasiak
Atomic force microscopy of nucleoprotein complexes.
Scanning microscopy 1995;9(3):705-24; discussion 724-7.
1994: Luda S Shlyakhtenko; Ettore Appella; Rodney E Harrington; I Kutyavin; Yuri L Lyubchenko
Structure of three-way DNA junctions. 2. Effects of extra bases and mismatches.
Journal of biomolecular structure & dynamics 1994;12(1):131-43.
1994: Luda S Shlyakhtenko; D Rekesh; Stuart Lindsey; I Kutyavin; Ettore Appella; Rodney E Harrington; Yuri L Lyubchenko
Structure of three-way DNA junctions. 1. Non-planar DNA geometry.
Journal of biomolecular structure & dynamics 1994;11(6):1175-89.
1993: T W Jing; A M Jeffrey; J A DeRose; Yuri L Lyubchenko; Luda S Shlyakhtenko; Rodney E Harrington; Ettore Appella; J Larsen; A Vaught; D Rekesh
Structure of hydrated oligonucleotides studied by in situ scanning tunneling microscopy.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(19):8934-8.
1993: Yuri L Lyubchenko; Luda S Shlyakhtenko; Ettore Appella; Rodney E Harrington
CA runs increase DNA flexibility in the complex of lambda Cro protein with the OR3 site.
Biochemistry 1993;32(15):4121-7.
1993: Yuri L Lyubchenko; Luda S Shlyakhtenko; R Harrington; P Oden; Stuart Lindsey
Atomic force microscopy of long DNA: imaging in air and under water.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(6):2137-40.
1993: Yuri L Lyubchenko; P I Oden; D Lampner; Stuart Lindsey; K A Dunker
Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces.
Nucleic acids research 1993;21(5):1117-23.
1992: Yuri L Lyubchenko; A A Gall; Luda S Shlyakhtenko; Rodney E Harrington; Bertram L Jacobs; P I Oden; Stuart Lindsey
Atomic force microscopy imaging of double stranded DNA and RNA.
Journal of biomolecular structure & dynamics 1992;10(3):589-606.
1992: Yuri L Lyubchenko; Bertram L Jacobs; Stuart Lindsey
Atomic force microscopy of reovirus dsRNA: a routine technique for length measurements.
Nucleic acids research 1992;20(15):3983-6.
1991: Yuri L Lyubchenko; Luda S Shlyakhtenko; B Chernov; Rodney E Harrington
DNA bending induced by Cro protein binding as demonstrated by gel electrophoresis.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(12):5331-4.