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Eugene Madsen

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TOP 3
Eugene L Madsen
Microorganisms and their roles in fundamental biogeochemical cycles.
J S-C Liou; B Szostek; Christopher M Derito; Eugene L Madsen
Investigating the biodegradability of perfluorooctanoic acid.
Jane M Yagi; Joseph M Suflita; Lisa M Gieg; Christopher M Derito; Che Ok Jeon; Eugene L Madsen
Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers.

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All Publications

2011: Eugene L Madsen
Microorganisms and their roles in fundamental biogeochemical cycles.
Current opinion in biotechnology 2011;22(3):456-64.
2010: J S-C Liou; B Szostek; Christopher M Derito; Eugene L Madsen
Investigating the biodegradability of perfluorooctanoic acid.
Chemosphere 2010;80(2):176-83.
2010: Jane M Yagi; Joseph M Suflita; Lisa M Gieg; Christopher M Derito; Che Ok Jeon; Eugene L Madsen
Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers.
Applied and environmental microbiology 2010;76(10):3124-34.
2010: Jane M Yagi; Edward F Neuhauser; John A Ripp; David M Mauro; Eugene L Madsen
Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community.
The ISME journal 2010;4(1):131-43.
2009: Jane M Yagi; Eugene L Madsen
Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer.
Applied and environmental microbiology 2009;75(20):6478-87.
2009: Jane M Yagi; David Sims; Thomas Brettin; David Bruce; Eugene L Madsen
The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer.
Environmental microbiology 2009;11(9):2253-70.
2009: Jinki Yeom; Che Ok Jeon; Eugene L Madsen; Woojun Park
In vitro and in vivo interactions of ferredoxin-NADP+ reductases in Pseudomonas putida.
Journal of biochemistry 2009;145(4):481-91.
2009: Christopher M Derito; Eugene L Madsen
Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism.
The ISME journal 2009;3(4):477-85.
2009: Graham M Pumphrey; Buck T Hanson; Subhash Chandra; Eugene L Madsen
Dynamic secondary ion mass spectrometry imaging of microbial populations utilizing C-labelled substrates in pure culture and in soil.
Environmental microbiology 2009;11(1):220-9.
2008: J S-C Liou; Christopher M Derito; Eugene L Madsen
Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment.
Environmental microbiology 2008;10(8):1964-77.
2008: Graham M Pumphrey; Eugene L Madsen
Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil.
Applied and environmental microbiology 2008;74(13):4111-8.
2007: Graham M Pumphrey; Eugene L Madsen
Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2.
Microbiology (Reading, England) 2007;153(Pt 11):3730-8.
2007: Minjeong Park; Yeji Jeon; Ho Hee Jang; Hyeon-Su Ro; Woojun Park; Eugene L Madsen; Che Ok Jeon
Molecular and biochemical characterization of 3-hydroxybenzoate 6-hydroxylase from Polaromonas naphthalenivorans CJ2.
Applied and environmental microbiology 2007;73(16):5146-52.
2006: Che Ok Jeon; Minjeong Park; Hyun-Su Ro; Woojun Park; Eugene L Madsen
The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control.
Applied and environmental microbiology 2006;72(2):1086-95.
2006: Eugene L Madsen
The use of stable isotope probing techniques in bioreactor and field studies on bioremediation.
Current opinion in biotechnology 2006;17(1):92-7.
2005: Christopher M Derito; Graham M Pumphrey; Eugene L Madsen
Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community.
Applied and environmental microbiology 2005;71(12):7858-65.
2005: Eugene L Madsen
Identifying microorganisms responsible for ecologically significant biogeochemical processes.
Nature reviews. Microbiology 2005;3(5):439-46.
2004: Woojun Park; Eugene L Madsen
Characterization in Pseudomonas putida Cg1 of nahR and its role in bacterial survival in soil.
Applied microbiology and biotechnology 2004;66(2):209-16.
2004: Jeffrey M Weiss; Amanda J McKay; Christopher M Derito; Chuichi Watanabe; Kevin A Thorn; Eugene L Madsen
Development and application of pyrolysis gas chromatography/mass spectrometry for the analysis of bound trinitrotoluene residues in soil.
Environmental science & technology 2004;38(7):2167-74.
2004: Woojun Park; Che Ok Jeon; H Cadillo; Christopher M Derito; Eugene L Madsen
Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: toxicity of naphthalene and its metabolites.
Applied microbiology and biotechnology 2004;64(3):429-35.
2004: Che Ok Jeon; Woojun Park; William C Ghiorse; Eugene L Madsen
Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment.
International journal of systematic and evolutionary microbiology 2004;54(Pt 1):93-7.
2003: Che Ok Jeon; Woojun Park; P Padmanabhan; Christopher M Derito; J R Snape; Eugene L Madsen
Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(23):13591-6.
2003: Woojun Park; Che Ok Jeon; Amy M Hohnstock-Ashe; Stephen C Winans; Gerben J Zylstra; Eugene L Madsen
Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1.
Applied and environmental microbiology 2003;69(6):3263-71.
2003: Mark S Wilson; James B Herrick; Che Ok Jeon; David E Hinman; Eugene L Madsen
Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments.
Applied and environmental microbiology 2003;69(4):2172-81.
2003: P Padmanabhan; S Padmanabhan; Christopher M Derito; A Gray; D Gannon; J R Snape; C S Tsai; Woojun Park; C Jeon; Eugene L Madsen
Respiration of 13C-labeled substrates added to soil in the field and subsequent 16S rRNA gene analysis of 13C-labeled soil DNA.
Applied and environmental microbiology 2003;69(3):1614-22.
2002: Woojun Park; Che Ok Jeon; Eugene L Madsen
Interaction of NahR, a LysR-type transcriptional regulator, with the alpha subunit of RNA polymerase in the naphthalene degrading bacterium, Pseudomonas putida NCIB 9816-4.
FEMS microbiology letters 2002;213(2):159-65.
2002: Woojun Park; Parasuraman Padmanabhan; Saraswathi Padmanabhan; Gerben J Zylstra; Eugene L Madsen
nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA.
Microbiology (Reading, England) 2002;148(Pt 8):2319-29.
2002: Corien Bakermans; Eugene L Madsen
Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters.
Microbial ecology 2002;44(2):95-106.
2002: Corien Bakermans; Amy M Hohnstock-Ashe; S Padmanabhan; P Padmanabhan; Eugene L Madsen
Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities.
Microbial ecology 2002;44(2):107-17.
2002: Corien Bakermans; Eugene L Madsen
Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification.
Journal of microbiological methods 2002;50(1):75-84.
2001: Amy M Hohnstock-Ashe; S M Plummer; R M Yager; P Baveye; Eugene L Madsen
Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: electron source and microbial communities involved in reductive dechlorination.
Environmental science & technology 2001;35(22):4449-56.
2000: Corien Bakermans; Eugene L Madsen
Use of substrate responsive-direct viable counts to visualize naphthalene degrading bacteria in a coal tar-contaminated groundwater microbial community.
Journal of microbiological methods 2000;43(2):81-90.
2000: A M Hohnstock; K G Stuart-Keil; E E Kull; Eugene L Madsen
Naphthalene and donor cell density influence field conjugation of naphthalene catabolism plasmids.
Applied and environmental microbiology 2000;66(7):3088-92.
1999: D N Miller; J E Bryant; Eugene L Madsen; William C Ghiorse
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples.
Applied and environmental microbiology 1999;65(11):4715-24.
1999: M S Wilson; Corien Bakermans; Eugene L Madsen
In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater.
Applied and environmental microbiology 1999;65(1):80-7.
1997: J B Herrick; K G Stuart-Keil; William C Ghiorse; Eugene L Madsen
Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site.
Applied and environmental microbiology 1997;63(6):2330-7.
1995: William C Ghiorse; J B Herrick; R L Sandoli; Eugene L Madsen
Natural selection of PAH-degrading bacterial guilds at coal-tar disposal sites.
Environmental health perspectives 1995;103 Suppl 5():107-11.
1994: M I Moré; J B Herrick; M C Silva; William C Ghiorse; Eugene L Madsen
Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment.
Applied and environmental microbiology 1994;60(5):1572-80.
1993: J B Herrick; Eugene L Madsen; Carl A Batt; William C Ghiorse
Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria.
Applied and environmental microbiology 1993;59(3):687-94.
1991: Eugene L Madsen; J L Sinclair; William C Ghiorse
In situ biodegradation: microbiological patterns in a contaminated aquifer.
Science (New York, N.Y.) 1991;252(5007):830-3.
1985: Eugene L Madsen; M Alexander
Effects of chemical speciation on the mineralization of organic compounds by microorganisms.
Applied and environmental microbiology 1985;50(2):342-9.