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Matthias Mann

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Korana Radovanac; Jan-Niklas Schulz; Katrin Blumbach; Beate Eckes; Reinhard Fässler; Tamar Geiger; Thomas Krieg; Matthias Mann; Jessica Morgner; Cam Patterson; Sara A Wickström
Stabilization of integrin-linked kinase by the Hsp90-CHIP axis impacts cellular force generation, migration and the fibrotic response.
Gabriele Stoehr; Christoph Schaab; Johannes Graumann; Matthias Mann
A SILAC-based Approach Identifies Substrates of Caspase-dependent Cleavage upon TRAIL-induced Apoptosis.
Natalie Krahmer; Matthias Mann; Gabriele Stoehr; Robert V Farese; Maximiliane Hilger; Nora Kory; Florian Wilfling; Tobias C Walther
Protein correlation profiles identify lipid droplet proteins with high confidence.

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All Publications

2013: Korana Radovanac; Jan-Niklas Schulz; Katrin Blumbach; Beate Eckes; Reinhard Fässler; Tamar Geiger; Thomas Krieg; Matthias Mann; Jessica Morgner; Cam Patterson; Sara A Wickström
Stabilization of integrin-linked kinase by the Hsp90-CHIP axis impacts cellular force generation, migration and the fibrotic response.
The EMBO journal 2013;32(10):1409-24.
2013: Gabriele Stoehr; Christoph Schaab; Johannes Graumann; Matthias Mann
A SILAC-based Approach Identifies Substrates of Caspase-dependent Cleavage upon TRAIL-induced Apoptosis.
Molecular & cellular proteomics : MCP 2013;12(5):1436-50.
2013: Natalie Krahmer; Matthias Mann; Gabriele Stoehr; Robert V Farese; Maximiliane Hilger; Nora Kory; Florian Wilfling; Tobias C Walther
Protein correlation profiles identify lipid droplet proteins with high confidence.
Molecular & cellular proteomics : MCP 2013;12(5):1115-26.
2013: Felix Meissner; Hans-Joachim Mollenkopf; Richard A Scheltema; Matthias Mann
Direct proteomic quantification of the secretome of activated immune cells.
Science (New York, N.Y.) 2013;340(6131):475-8.
2013: Michele Tinti; Christopher T Workman; Nikolaj Blom; Søren Brunak; Martina Carducci; Luisa Castagnoli; Stefano Costa; Lars Kiemer; Francesca Langone; Kazuya Machida; Matthias Mann; Bruce J Mayer; Martin L Miller; Jesper V Olsen; Serena Paoluzi; Francesca Sacco; Mike Schutkowski; Christopher M Thompson; Gianni Cesareni
The SH2 Domain Interaction Landscape.
Cell reports 2013;3(4):1293-305.
2013: Jacek R Wiśniewski; Kamila Duś; Matthias Mann
Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins.
Proteomics. Clinical applications 2013;7(3-4):225-33.
2013: Matthias Mann; Nagarjuna Nagaraj; Nils A Kulak; Jürgen Cox
The coming age of complete, accurate, and ubiquitous proteomes.
Molecular cell 2013;49(4):583-90.
2013: Sara Zanivan; Kristina Behrendt; Jürgen Cox; Reinhard Fässler; Gabriela Kalna; Rune Linding; Laura M Machesky; Alexander Meves; Lisa J Neilson; Erwin M Schoof; Hao R Tang; Carol S Trempus; Jan M van Deursen; Janine H van Ree; Sara A Wickström; Matthias Mann
In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis.
Cell reports 2013;3(2):552-66.
2013: Erica M Pasini; Roberta Spaccapelo; Alan W Thomas; Elena Aime; Matt Berriman; Joanna A Braks; Jannik Fonager; Jan A Hiss; Chris J Janse; Onny Klop; Clemens H M Kocken; Matthias Mann; Thomas D Otto; Blandine Franke-Fayard
Proteomic and genetic analyses demonstrate that Plasmodium berghei blood stages export a large and diverse repertoire of proteins.
Molecular & cellular proteomics : MCP 2013;12(2):426-48.
2013: H Christian Eberl; Christian D Kelstrup; Cornelia G Spruijt; Michiel Vermeulen; Matthias Mann
A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics.
Molecular cell 2013;49(2):368-78.
2013: Maria S Robles; Matthias Mann
Proteomic approaches in circadian biology.
Handbook of experimental pharmacology 2013;217():389-407.
2013: Stefka Tyanova; Jürgen Cox; Matthias Mann; Jesper Olsen; Dmitrij Frishman
Phosphorylation variation during the cell cycle scales with structural propensities of proteins.
PLoS computational biology 2013;9(1):e1002842.
2013: Falk Butter; Zdenka Cicova; Matthias Mann; Margaux Michel; Ferdinand Bucerius; Christian J Janzen
Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery.
Molecular & cellular proteomics : MCP 2013;12(1):172-9.
2013: Paul J Boersema; Tamar Geiger; Jacek R Wisniewski; Matthias Mann
Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples.
Molecular & cellular proteomics : MCP 2013;12(1):158-71.
2012: Annette Michalski; Nadin Neuhauser; Jürgen Cox; Matthias Mann
A systematic investigation into the nature of tryptic HCD spectra.
Journal of proteome research 2012;11(11):5479-91.
2012: Anne Frohn; Elke Glasmacher; Vigo Heissmeyer; Matthias Mann; Sabine Rüdel; Julia Stöhr; H Christian Eberl; Gunter Meister
Dicer-dependent and -independent Argonaute2 protein interaction networks in mammalian cells.
Molecular & cellular proteomics : MCP 2012;11(11):1442-56.
2012: Nadin Neuhauser; Annette Michalski; Jürgen Cox; Matthias Mann
Expert system for computer-assisted annotation of MS/MS spectra.
Molecular & cellular proteomics : MCP 2012;11(11):1500-9.
2012: Marion Scheibe; Thomas Tuschl; Falk Butter; Markus Hafner; Matthias Mann
Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions.
Nucleic acids research 2012;40(19):9897-902.
2012: Falk Butter; Lucy Davison; Marion Scheibe; John A Todd; Michiel Vermeulen; Tar Viturawong; Matthias Mann
Proteome-wide analysis of disease-associated SNPs that show allele-specific transcription factor binding.
PLoS genetics 2012;8(9):e1002982.
2012: Dorota F Zielinska; Florian Gnad; Katharina Schropp; Jacek R Wiśniewski; Matthias Mann
Mapping N-glycosylation sites across seven evolutionarily distant species reveals a divergent substrate proteome despite a common core machinery.
Molecular cell 2012;46(4):542-8.
2012: Sally J Deeb; Rochelle C J D'Souza; Jürgen Cox; Marc Schmidt-Supprian; Matthias Mann
Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles.
Molecular & cellular proteomics : MCP 2012;11(5):77-89.
2012: Petra Beli; Linda Baskcomb; Stephen P Jackson; Natalia Lukashchuk; Matthias Mann; Jesper V Olsen; Sebastian A Wagner; Brian T Weinert; Chunaram Choudhary
Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
Molecular cell 2012;46(2):212-25.
2012: Jacek R Wiśniewski; Matthias Mann
Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis.
Analytical chemistry 2012;84(6):2631-7.
2012: Angus I Lamond; Michal Linial; Alexander Makarov; Ruedi Aebersold; Jens S Andersen; Wolfgang Baumeister; F Ulrich Hartl; Stevan Horning; Carol V Robinson; Luis Serrano; Mathias Uhlen; Ole Vorm; anne katrin werenskiold; Matthias Mann
Advancing cell biology through proteomics in space and time (PROSPECTS).
Molecular & cellular proteomics : MCP 2012;11(3):O112.017731.
2012: Christoph Schaab; Gabriele Stoehr; Juergen Cox; Tamar Geiger; Matthias Mann
Analysis of high accuracy, quantitative proteomics data in the MaxQB database.
Molecular & cellular proteomics : MCP 2012;11(3):M111.014068.
2012: Tamar Geiger; Christoph Schaab; Anja Wehner; Juergen Cox; Matthias Mann
Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins.
Molecular & cellular proteomics : MCP 2012;11(3):M111.014050.
2012: Johannes Graumann; Richard A Scheltema; Yong Zhang; Jürgen Cox; Matthias Mann
A framework for intelligent data acquisition and real-time database searching for shotgun proteomics.
Molecular & cellular proteomics : MCP 2012;11(3):M111.013185.
2012: Annette Michalski; Mathias Müller; Dirk Nolting; Philip Remes; Jae Schwartz; Rosa Viner; Matthias Mann; Michael Belford; Juergen Cox; Eugen Damoc; Eduard Denisov; Jean-Jacques Dunyach; Stevan Horning; Oliver Lange; Alexander Makarov
Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes.
Molecular & cellular proteomics : MCP 2012;11(3):O111.013698.
2012: Nagarjuna Nagaraj; Nadin Neuhauser; Ole Vorm; Nils Alexander Kulak; Juergen Cox; Ole Hoerning; Korbinian Mayr; Matthias Mann
System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap.
Molecular & cellular proteomics : MCP 2012;11(3):M111.013722.
2012: Marlis Zeiler; Emma Lundberg; Werner L Straube; Mathias Uhlen; Matthias Mann
A Protein Epitope Signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines.
Molecular & cellular proteomics : MCP 2012;11(3):O111.009613.
2012: Maximiliane Hilger; Matthias Mann
Triple SILAC to determine stimulus specific interactions in the Wnt pathway.
Journal of proteome research 2012;11(2):982-94.
2012: Matthias Mann
Proteomics for biomedicine: a half-completed journey.
EMBO molecular medicine 2012;4(2):75-7.
2012: Jannik Fonager; Joanna A M Braks; Chris J Janse; Shahid M Khan; Onny Klop; Clemens H M Kocken; Matthias Mann; Erica M Pasini; Jai Ramesar; Edmond J Remarque; Alan W Thomas; Sjoerd G van Duinen; Irene O C M Vroegrijk; Blandine M D Franke-Fayard
Reduced CD36-dependent tissue sequestration of Plasmodium-infected erythrocytes is detrimental to malaria parasite growth in vivo.
The Journal of experimental medicine 2012;209(1):93-107.
2012: S Babak Azimifar; Ralph T Böttcher; Carsten Grashoff; Marcus Krüger; Kyle R Legate; Matthias Mann; Sara Zanivan; Reinhard Fässler
Induction of membrane circular dorsal ruffles requires co-signalling of integrin-ILK-complex and EGF receptor.
Journal of cell science 2012;125(Pt 2):435-48.
2012: Juergen Cox; Matthias Mann
1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data.
BMC bioinformatics 2012;13 Suppl 16():S12.
2012: Jacek R Wiśniewski; Dorota F Zielińska; Kamila Duś; Florian Gnad; Paweł Ostasiewicz; Matthias Mann
Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma.
Molecular systems biology 2012;8():611.
2012: Silvia Stingele; Gabriele Stoehr; Jürgen Cox; Matthias Mann; Karolina Peplowska; Zuzana Storchova
Global analysis of genome, transcriptome and proteome reveals the response to aneuploidy in human cells.
Molecular systems biology 2012;8():608.
2011: Sidney B Cambridge; Florian Gnad; Marcus Krüger; Justo Lorenzo Bermejo; Chuong Nguyen; Matthias Mann
Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover.
Journal of proteome research 2011;10(12):5275-84.
2011: Natalie Krahmer; Susanne Lingrell; Matthias Mann; Heather W Newman; Marc Schmidt-Supprian; Dennis E Vance; Robert V Farese; Yi Guo; Klaus Heger; Maximiliane Hilger; Florian Wilfling; Tobias C Walther
Phosphatidylcholine synthesis for lipid droplet expansion is mediated by localized activation of CTP:phosphocholine cytidylyltransferase.
Cell metabolism 2011;14(4):504-15.
2011: Sebastian A Wagner; Brian T Weinert; Petra Beli; Jürgen Cox; Matthias Mann; Michael L Nielsen; Chunaram Choudhary
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
Molecular & cellular proteomics : MCP 2011;10(10):M111.013284.
2011: Alexander Meves; Sara Zanivan; John DiGiovanni; Tamar Geiger; Matthias Mann; Reinhard Fässler
Beta1 integrin cytoplasmic tyrosines promote skin tumorigenesis independent of their phosphorylation.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(37):15213-8.
2011: Annette Michalski; Nagarjuna Nagaraj; Andreas Wieghaus; Oliver Lange; Alexander Makarov; Matthias Mann; Juergen Cox; Eugen Damoc; Jan-Peter Hauschild; Stevan Horning
Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.
Molecular & cellular proteomics : MCP 2011;10(9):M111.011015.
2011: Alexandre Zougman; Matthias Mann; Jacek R Wisniewski
Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene.
Nucleic acids research 2011;39(16):7103-13.
2011: Jürgen Cox; Annette Michalski; Matthias Mann
Software lock mass by two-dimensional minimization of peptide mass errors.
Journal of the American Society for Mass Spectrometry 2011;22(8):1373-80.
2011: Mara Monetti; Nagarjuna Nagaraj; Kirti Sharma; Matthias Mann
Large-scale phosphosite quantification in tissues by a spike-in SILAC method.
Nature methods 2011;8(8):655-8.
2011: Suman S Thakur; Peter Bandilla; Bhaswati Chatterjee; Juergen Cox; Florian Fröhlich; Tamar Geiger; Matthias Mann
Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.
Molecular & cellular proteomics : MCP 2011;10(8):M110.003699.
2011: Jacek R Wiśniewski; Pawel Ostasiewicz; Matthias Mann
High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers.
Journal of proteome research 2011;10(7):3040-9.
2011: Jürgen Cox; Matthias Mann
Quantitative, high-resolution proteomics for data-driven systems biology.
Annual review of biochemistry 2011;80():273-99.
2011: Annette Michalski; Juergen Cox; Matthias Mann
More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.
Journal of proteome research 2011;10(4):1785-93.
2011: Jürgen Cox; Nadin Neuhauser; Annette Michalski; Richard A Scheltema; Jesper V Olsen; Matthias Mann
Andromeda: a peptide search engine integrated into the MaxQuant environment.
Journal of proteome research 2011;10(4):1794-805.
2011: Jacek R Wiśniewski; Dorota F Zielinska; Matthias Mann
Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method.
Analytical biochemistry 2011;410(2):307-9.
2011: Matthias Mann
John Bennett Fenn, 1917-2010.
Journal of the American Society for Mass Spectrometry 2011;22(3):602-3.
2011: Nagarjuna Nagaraj; Matthias Mann
Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome.
Journal of proteome research 2011;10(2):637-45.
2011: Tamar Geiger; Jacek R Wisniewski; Juergen Cox; Sara Zanivan; Marcus Kruger; Yasushi Ishihama; Matthias Mann
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.
Nature protocols 2011;6(2):147-57.
2011: Dirk M Walther; Matthias Mann
Accurate quantification of more than 4000 mouse tissue proteins reveals minimal proteome changes during aging.
Molecular & cellular proteomics : MCP 2011;10(2):M110.004523.
2011: H Christian Eberl; Matthias Mann; Michiel Vermeulen
Quantitative proteomics for epigenetics.
Chembiochem : a European journal of chemical biology 2011;12(2):224-34.
2011: Nagarjuna Nagaraj; Svante Pääbo; Jacek R Wisniewski; Juergen Cox; Tamar Geiger; Janet Kelso; Martin Kircher; Matthias Mann
Deep proteome and transcriptome mapping of a human cancer cell line.
Molecular systems biology 2011;7():548.
2011: Michael H Tatham; Matthias Mann; Ivan Matic; Ron Thomas Hay
Comparative proteomic analysis identifies a role for SUMO in protein quality control.
Science signaling 2011;4(178):rs4.
2011: Kristoffer T G Rigbolt; Tatyana A Prokhorova; Vyacheslav Akimov; Jeanette Henningsen; Pia T Johansen; Irina Kratchmarova; Moustapha Kassem; Matthias Mann; Jesper V Olsen; Blagoy Blagoev
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
Science signaling 2011;4(164):rs3.
2011: Jesper V Olsen; Matthias Mann
Effective representation and storage of mass spectrometry-based proteomic data sets for the scientific community.
Science signaling 2011;4(160):pe7.
2011: Karlheinz Mann; Matthias Mann
In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos.
Proteome science 2011;9(1):7.
2011: Florian Gnad; Jeremy Gunawardena; Matthias Mann
PHOSIDA 2011: the posttranslational modification database.
Nucleic acids research 2011;39(Database issue):D253-60.
2010: Nagarjuna Nagaraj; Rochelle C J D'Souza; Juergen Cox; Jesper V Olsen; Matthias Mann
Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.
Journal of proteome research 2010;9(12):6786-94.
2010: Sara A Wickström; Anika Lange; Michael W Hess; Julien Polleux; Joachim P Spatz; Marcus Krüger; Kristian Pfaller; Armin Lambacher; Wilhelm Bloch; Matthias Mann; Lukas A Huber; Reinhard Fässler
Integrin-linked kinase controls microtubule dynamics required for plasma membrane targeting of caveolae.
Developmental cell 2010;19(4):574-88.
2010: Tamar Geiger; Juergen Cox; Matthias Mann
Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation.
Molecular & cellular proteomics : MCP 2010;9(10):2252-61.
2010: Michiel Vermeulen; H Christian Eberl; Filomena Matarese; Hendrik Marks; Sergei Denissov; Falk Butter; Kenneth K Lee; Jesper V Olsen; Anthony A Hyman; Henk G Stunnenberg; Matthias Mann
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.
Cell 2010;142(6):967-80.
2010: Na Sun; Cuiping Pan; Stephan Nickell; Matthias Mann; Wolfgang Baumeister; István Nagy
Quantitative proteome and transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions.
Journal of proteome research 2010;9(9):4839-50.
2010: Tamar Geiger; Juergen Cox; Matthias Mann
Proteomic changes resulting from gene copy number variations in cancer cells.
PLoS genetics 2010;6(9):.
2010: Ivan Matic; Joost Schimmel; Ivo A Hendriks; Maria A van Santen; Frans van de Rijke; Hans van Dam; Florian Gnad; Matthias Mann; Alfred C O Vertegaal
Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif.
Molecular cell 2010;39(4):641-52.
2010: Tobias C Walther; Matthias Mann
Mass spectrometry-based proteomics in cell biology.
The Journal of cell biology 2010;190(4):491-500.
2010: Paweł Ostasiewicz; Dorota F Zielinska; Matthias Mann; Jacek R Wiśniewski
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry.
Journal of proteome research 2010;9(7):3688-700.
2010: Florian Gnad; Shubin Ren; Chunaram Choudhary; Jürgen Cox; Matthias Mann
Predicting post-translational lysine acetylation using support vector machines.
Bioinformatics (Oxford, England) 2010;26(13):1666-8.
2010: Jacek R Wiśniewski; Nagarjuna Nagaraj; Alexandre Zougman; Florian Gnad; Matthias Mann
Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.
Journal of proteome research 2010;9(6):3280-9.
2010: Chunaram Choudhary; Matthias Mann
Decoding signalling networks by mass spectrometry-based proteomics.
Nature reviews. Molecular cell biology 2010;11(6):427-39.
2010: Dorota F Zielinska; Florian Gnad; Jacek R Wiśniewski; Matthias Mann
Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.
Cell 2010;141(5):897-907.
2010: Nina C Hubner; Alexander W Bird; Jürgen Cox; Bianca Splettstoesser; Peter Bandilla; Ina Poser; Anthony Hyman; Matthias Mann
Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions.
The Journal of cell biology 2010;189(4):739-54.
2010: Tamar Geiger; Juergen Cox; Pawel Ostasiewicz; Jacek R Wisniewski; Matthias Mann
Super-SILAC mix for quantitative proteomics of human tumor tissue.
Nature methods 2010;7(5):383-5.
2010: Falk Butter; Dennis Kappei; Frank Buchholz; Michiel Vermeulen; Matthias Mann
A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth.
EMBO reports 2010;11(4):305-11.
2010: Christian A Luber; Jürgen Cox; Henning Lauterbach; Ben Fancke; Matthias Selbach; Jurg Tschopp; Shizuo Akira; Marian Wiegand; Hubertus Hochrein; Meredith O'Keeffe; Matthias Mann
Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.
Immunity 2010;32(2):279-89.
2010: Tobias C Walther; Jesper V Olsen; Matthias Mann
Yeast expression proteomics by high-resolution mass spectrometry.
Methods in enzymology 2010;470():259-80.
2010: Karlheinz Mann; Albert J Poustka; Matthias Mann
Phosphoproteomes of Strongylocentrotus purpuratus shell and tooth matrix: identification of a major acidic sea urchin tooth phosphoprotein, phosphodontin.
Proteome science 2010;8(1):6.
2010: Jesper V Olsen; Michiel Vermeulen; Anna Santamaria; Chanchal Kumar; Martin L Miller; Lars J Jensen; Florian Gnad; Jürgen Cox; Thomas S Jensen; Erich A Nigg; Søren Brunak; Matthias Mann
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
Science signaling 2010;3(104):ra3.
2010: Peter Mortensen; Joost W Gouw; Jesper V Olsen; Shao-En Ong; Kristoffer T G Rigbolt; Jakob Bunkenborg; Jürgen Cox; Leonard J Foster; Albert J R Heck; Blagoy Blagoev; Jens S Andersen; Matthias Mann
MSQuant, an open source platform for mass spectrometry-based quantitative proteomics.
Journal of proteome research 2010;9(1):393-403.
2009: Jacek R Wiśniewski; Alexandre Zougman; Matthias Mann
Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.
Journal of proteome research 2009;8(12):5674-8.
2009: Angela M Hirtreiter; Giulia Calloni; Francesca Forner; Burghardt Scheibe; Magda Puype; Joel Vandekerckhove; Matthias Mann; F Ulrich Hartl; Manajit Hayer-Hartl
Differential substrate specificity of group I and group II chaperonins in the archaeon Methanosarcina mazei.
Molecular microbiology 2009;74(5):1152-68.
2009: Leonie F Waanders; Karolina Chwalek; Mara Monetti; Chanchal Kumar; Eckhard Lammert; Matthias Mann
Quantitative proteomic analysis of single pancreatic islets.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(45):18902-7.
2009: Chunaram Choudhary; Jesper V Olsen; Christian Brandts; Jürgen Cox; NG Pavankumar Reddy; Frank D Böhmer; Volker Gerke; Dirk-E Schmidt-Arras; Wolfgang E Berdel; Carsten Müller-Tidow; Matthias Mann; Hubert Serve
Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes.
Molecular cell 2009;36(2):326-39.
2009: Matthias Mann
Comparative analysis to guide quality improvements in proteomics.
Nature methods 2009;6(10):717-19.
2009: Francesca Forner; Chanchal Kumar; Christian A Luber; Tobias Fromme; Martin Klingenspor; Matthias Mann
Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions.
Cell metabolism 2009;10(4):324-35.
2009: Florian Gnad; Lyris M F de Godoy; Jürgen Cox; Nadin Neuhauser; Shubin Ren; Jesper V Olsen; Matthias Mann
High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast.
Proteomics 2009;9(20):4642-52.
2009: Aiping Lu; Alexandre Zougman; Marek Pudełko; Marek Bebenek; Piotr Ziółkowski; Matthias Mann; Jacek R Wiśniewski
Mapping of lysine monomethylation of linker histones in human breast and its cancer.
Journal of proteome research 2009;8(9):4207-15.
2009: Chunaram Choudhary; Chanchal Kumar; Florian Gnad; Michael L Nielsen; Michael Rehman; Tobias C Walther; Jesper V Olsen; Matthias Mann
Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Science (New York, N.Y.) 2009;325(5942):834-40.
2009: Jürgen Cox; Matthias Mann
Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap.
Journal of the American Society for Mass Spectrometry 2009;20(8):1477-85.
2009: Dorota F Zielinska; Florian Gnad; Monika Jedrusik-Bode; Jacek R Wiśniewski; Matthias Mann
Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins.
Journal of proteome research 2009;8(8):4039-49.
2009: Maximiliane Hilger; Tiziana Bonaldi; Florian Gnad; Matthias Mann
Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics.
Molecular & cellular proteomics : MCP 2009;8(8):1908-20.
2009: Stephan Nickell; Florian Beck; Sjors H W Scheres; Andreas Korinek; Friedrich Förster; Keren Lasker; Oana Mihalache; Na Sun; István Nagy; Andrej Sali; Jürgen M Plitzko; Jose M Carazo; Matthias Mann; Wolfgang Baumeister
Insights into the molecular architecture of the 26S proteasome.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(29):11943-7.
2009: Felix S Oppermann; Florian Gnad; Jesper V Olsen; Renate Hornberger; Zoltán Greff; György Kéri; Matthias Mann; Henrik Daub
Large-scale proteomics analysis of the human kinome.
Molecular & cellular proteomics : MCP 2009;8(7):1751-64.
2009: Falk Butter; Marion Scheibe; Mario Mörl; Matthias Mann
Unbiased RNA-protein interaction screen by quantitative proteomics.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(26):10626-31.
2009: Florian Fröhlich; Karen Moreira; Pablo S Aguilar; Nina C Hubner; Matthias Mann; Peter Walter; Tobias C Walther
A genome-wide screen for genes affecting eisosomes reveals Nce102 function in sphingolipid signaling.
The Journal of cell biology 2009;185(7):1227-42.
2009: Chanchal Kumar; Matthias Mann
Bioinformatics analysis of mass spectrometry-based proteomics data sets.
FEBS letters 2009;583(11):1703-12.
2009: Jacek R Wiśniewski; Alexandre Zougman; Nagarjuna Nagaraj; Matthias Mann
Universal sample preparation method for proteome analysis.
Nature methods 2009;6(5):359-62.
2009: Aiping Lu; Jacek R Wiśniewski; Matthias Mann
Comparative proteomic profiling of membrane proteins in rat cerebellum, spinal cord, and sciatic nerve.
Journal of proteome research 2009;8(5):2418-25.
2009: Matthias Selbach; Florian Ernst Paul; Sabine Brandt; Patrick Guye; Oliver Daumke; Steffen Backert; Christoph Dehio; Matthias Mann
Host cell interactome of tyrosine-phosphorylated bacterial proteins.
Cell host & microbe 2009;5(4):397-403.
2009: Stefan Hanke; Matthias Mann
The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2.
Molecular & cellular proteomics : MCP 2009;8(3):519-34.
2009: Cuiping Pan; Chanchal Kumar; Sebastian Bohl; Ursula Klingmueller; Matthias Mann
Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions.
Molecular & cellular proteomics : MCP 2009;8(3):443-50.
2009: Gerhard Mittler; Falk Butter; Matthias Mann
A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements.
Genome research 2009;19(2):284-93.
2009: Filip Golebiowski; Ivan Matic; Michael H Tatham; Christian Cole; Yili Yin; Akihiro Nakamura; Jürgen Cox; Geoffrey J Barton; Matthias Mann; Ron Thomas Hay
System-wide changes to SUMO modifications in response to heat shock.
Science signaling 2009;2(72):ra24.
2009: Jürgen Cox; Ivan Matic; Maximiliane Hilger; Nagarjuna Nagaraj; Matthias Selbach; Jesper V Olsen; Matthias Mann
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.
Nature protocols 2009;4(5):698-705.
2009: Michalis Aivaliotis; Boris Macek; Florian Gnad; Peter Reichelt; Matthias Mann; Dieter Oesterhelt
Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life.
PloS one 2009;4(3):e4777.
2009: Boris Macek; Matthias Mann; Jesper V Olsen
Global and site-specific quantitative phosphoproteomics: principles and applications.
Annual review of pharmacology and toxicology 2009;49():199-221.
2008: Sara Zanivan; Florian Gnad; Sara A Wickström; Tami Geiger; Boris Macek; Jürgen Cox; Reinhard Fässler; Matthias Mann
Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry.
Journal of proteome research 2008;7(12):5314-26.
2008: Jürgen Cox; Matthias Mann
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.
Nature biotechnology 2008;26(12):1367-72.
2008: Jürgen Cox; Nina C Hubner; Matthias Mann
How much peptide sequence information is contained in ion trap tandem mass spectra?
Journal of the American Society for Mass Spectrometry 2008;19(12):1813-20.
2008: Alexandre Zougman; Piotr Ziółkowski; Matthias Mann; Jacek R Wiśniewski
Evidence for insertional RNA editing in humans.
Current biology : CB 2008;18(22):1760-5.
2008: Matthias Mann; Neil L Kelleher
Precision proteomics: the case for high resolution and high mass accuracy.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(47):18132-8.
2008: Jacek R Wiśniewski; Alexandre Zougman; Sonja Krüger; Piotr Ziółkowski; Marek Pudełko; Marek Bebenek; Matthias Mann
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics.
Proteins 2008;73(3):710-8.
2008: Cuiping Pan; Florian Gnad; Jesper V Olsen; Matthias Mann
Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors.
Proteomics 2008;8(21):4534-46.
2008: Joost Schimmel; Katja M Larsen; Ivan Matic; Martijn van Hagen; Jürgen Cox; Matthias Mann; Jens S Andersen; Alfred C O Vertegaal
The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle.
Molecular & cellular proteomics : MCP 2008;7(11):2107-22.
2008: Tiziana Bonaldi; Tobias Straub; Jürgen Cox; Chanchal Kumar; Peter B Becker; Matthias Mann
Combined use of RNAi and quantitative proteomics to study gene function in Drosophila.
Molecular cell 2008;31(5):762-72.
2008: Maiken W Rosenstierne; Jeppe Vinther; Gerhard Mittler; Louise Larsen; Matthias Mann; Bodil Norrild
Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis.
Anticancer research 2008;28(5A):2553-9.
2008: Ivan Matic; Boris Macek; Maximiliane Hilger; Tobias C Walther; Matthias Mann
Phosphorylation of SUMO-1 occurs in vivo and is conserved through evolution.
Journal of proteome research 2008;7(9):4050-7.
2008: Boumediene Soufi; Florian Gnad; Peter R Jensen; Dina Petranovic; Matthias Mann; Ivan Mijakovic; Boris Macek
The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.
Proteomics 2008;8(17):3486-93.
2008: Philipp Mertins; H Christian Eberl; Jörg Renkawitz; Jesper V Olsen; Michel L Tremblay; Matthias Mann; Axel Ullrich; Henrik Daub
Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
Molecular & cellular proteomics : MCP 2008;7(9):1763-77.
2008: Henrik Daub; Jesper V Olsen; Michaela Bairlein; Florian Gnad; Felix S Oppermann; Roman Körner; Zoltán Greff; György Kéri; Olaf Stemmann; Matthias Mann
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.
Molecular cell 2008;31(3):438-48.
2008: Michiel Vermeulen; Nina C Hubner; Matthias Mann
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
Current opinion in biotechnology 2008;19(4):331-7.
2008: Leonie F Waanders; Reinaldo Almeida; Simon Prosser; Jürgen Cox; Daniel Eikel; Mark H Allen; Gary A Schultz; Matthias Mann
A novel chromatographic method allows on-line reanalysis of the proteome.
Molecular & cellular proteomics : MCP 2008;7(8):1452-9.
2008: Marcus Krüger; Markus Moser; Siegfried Ussar; Ingo Thievessen; Christian A Luber; Francesca Forner; Sarah Schmidt; Sara Zanivan; Reinhard Fässler; Matthias Mann
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function.
Cell 2008;134(2):353-64.
2008: Boris Macek; Christian Benda; Anja Jestel; Klaus Maskos; Matthias Mann; Albrecht Messerschmidt
Phosphorylation of the human full-length protein kinase Ciota.
Journal of proteome research 2008;7(7):2928-35.
2008: Johannes Graumann; Nina C Hubner; Jeong Beom Kim; Kinarm Ko; Markus Moser; Chanchal Kumar; Jürgen Cox; Hans Schöler; Matthias Mann
Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins.
Molecular & cellular proteomics : MCP 2008;7(4):672-83.
2008: Stefan Hanke; Hüseyin Besir; Dieter Oesterhelt; Matthias Mann
Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level.
Journal of proteome research 2008;7(3):1118-30.
2008: Marcus Krüger; Irina Kratchmarova; Blagoy Blagoev; Yu-Hua Tseng; C Ronald Kahn; Matthias Mann
Dissection of the insulin signaling pathway via quantitative phosphoproteomics.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(7):2451-6.
2008: Jacek R Wisniewski; Alexandre Zougman; Matthias Mann
Nepsilon-formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function.
Nucleic acids research 2008;36(2):570-7.
2008: Karlheinz Mann; Albert J Poustka; Matthias Mann
In-depth, high-accuracy proteomics of sea urchin tooth organic matrix.
Proteome science 2008;6():33.
2008: Susann Schenk; Gary J Schoenhals; Gustavo de Souza; Matthias Mann
A high confidence, manually validated human blood plasma protein reference set.
BMC medical genomics 2008;1():41.
2008: Karlheinz Mann; Albert J Poustka; Matthias Mann
The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes.
Proteome science 2008;6():22.
2008: Alexandre Zougman; Bartosz Pilch; Alexandre Podtelejnikov; Michael Kiehntopf; Claudia Schnabel; Chanchal Kumar; Matthias Mann
Integrated analysis of the cerebrospinal fluid peptidome and proteome.
Journal of proteome research 2008;7(1):386-99.
2008: Karlheinz Mann; Matthias Mann
The chicken egg yolk plasma and granule proteomes.
Proteomics 2008;8(1):178-91.
2008: Ivan Matic; Martijn van Hagen; Joost Schimmel; Boris Macek; Stephen C Ogg; Michael H Tatham; Ron Thomas Hay; Angus I Lamond; Matthias Mann; Alfred C O Vertegaal
In vivo identification of human small ubiquitin-like modifier polymerization sites by high accuracy mass spectrometry and an in vitro to in vivo strategy.
Molecular & cellular proteomics : MCP 2008;7(1):132-44.
2008: Martin Lee Miller; Stefan Hanke; Anders M Hinsby; Carsten Friis; Søren Brunak; Matthias Mann; Nikolaj Blom
Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2.
Molecular & cellular proteomics : MCP 2008;7(1):181-92.
2007: Bernd Schröder; Christian Wrocklage; Cuiping Pan; Ralf Jäger; Bernd Kösters; Helmut Schäfer; Hans-Peter Elsässer; Matthias Mann; Andrej Hasilik
Integral and associated lysosomal membrane proteins.
Traffic (Copenhagen, Denmark) 2007;8(12):1676-86.
2007: Leonie F Waanders; Stefan Hanke; Matthias Mann
Top-down quantitation and characterization of SILAC-labeled proteins.
Journal of the American Society for Mass Spectrometry 2007;18(11):2058-64.
2007: Antonis Kirmizis; Helena Santos-Rosa; Christopher J Penkett; Singer Michael; Michiel Vermeulen; Matthias Mann; Jürg Bähler; Roland D Green; Tony Kouzarides
Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation.
Nature 2007;449(7164):928-32.
2007: Michiel Vermeulen; Klaas Willem Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Hendrik G Stunnenberg; Matthias Mann; H Th Marc Timmers
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.
Cell 2007;131(1):58-69.
2007: Jesper V Olsen; Boris Macek; Oliver Lange; Alexander Makarov; Stevan Horning; Matthias Mann
Higher-energy C-trap dissociation for peptide modification analysis.
Nature methods 2007;4(9):709-12.
2007: Jürgen Cox; Matthias Mann
Is proteomics the new genomics?
Cell 2007;130(3):395-8.
2007: Rong Shi; Chanchal Kumar; Alexandre Zougman; Yanling Zhang; Alexandre Podtelejnikov; Jürgen Cox; Jacek R Wiśniewski; Matthias Mann
Analysis of the mouse liver proteome using advanced mass spectrometry.
Journal of proteome research 2007;6(8):2963-72.
2007: Jun Adachi; Chanchal Kumar; Yanling Zhang; Matthias Mann
In-depth analysis of the adipocyte proteome by mass spectrometry and bioinformatics.
Molecular & cellular proteomics : MCP 2007;6(7):1257-73.
2007: Joern Dengjel; Vyacheslav Akimov; Jesper V Olsen; Jakob Bunkenborg; Matthias Mann; Blagoy Blagoev; Jens S Andersen
Quantitative proteomic assessment of very early cellular signaling events.
Nature biotechnology 2007;25(5):566-8.
2007: Yun Wah Lam; Angus I Lamond; Matthias Mann; Jens S Andersen
Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins.
Current biology : CB 2007;17(9):749-60.
2007: Christian Klein; Michalis Aivaliotis; Jesper V Olsen; Michaela Falb; Hüseyin Besir; Beatrix Scheffer; Birgit Bisle; Andreas Tebbe; Kosta Konstantinidis; Frank Siedler; Friedhelm Pfeiffer; Matthias Mann; Dieter Oesterhelt
The low molecular weight proteome of Halobacterium salinarum.
Journal of proteome research 2007;6(4):1510-8.
2007: Boris Macek; Ivan Mijakovic; Jesper V Olsen; Florian Gnad; Chanchal Kumar; Peter R Jensen; Matthias Mann
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.
Molecular & cellular proteomics : MCP 2007;6(4):697-707.
2007: Jesper V Olsen; Peter Aa Nielsen; Jens R Andersen; Matthias Mann; Jacek R Wiśniewski
Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels.
Brain research 2007;1134(1):95-106.
2007: Florian Gnad; Shubin Ren; Juergen Cox; Jesper V Olsen; Boris Macek; Mario Oroshi; Matthias Mann
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites.
Genome biology 2007;8(11):R250.
2007: Juri Rappsilber; Matthias Mann; Yasushi Ishihama
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips.
Nature protocols 2007;2(8):1896-906.
2007: Shao-En Ong; Matthias Mann
Stable isotope labeling by amino acids in cell culture for quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) 2007;359():37-52.
2007: Karlheinz Mann; Jesper V Olsen; Boris Macek; Florian Gnad; Matthias Mann
Phosphoproteins of the chicken eggshell calcified layer.
Proteomics 2007;7(1):106-15.
2007: Yanling Zhang; Yong Zhang; Jun Adachi; Jesper V Olsen; Rong Shi; Gustavo de Souza; Erica Pasini; Leonard J Foster; Boris Macek; Alexandre Zougman; Chanchal Kumar; Jacek R Wisniewski; Wang Jun; Matthias Mann
MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.
Nucleic acids research 2007;35(Database issue):D771-9.
2007: Jacek R Wisniewski; Alexandre Zougman; Sonja Krüger; Matthias Mann
Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations, and phosphorylation as well as differences between cell culture and tissue.
Molecular & cellular proteomics : MCP 2007;6(1):72-87.
2006: Matthias Mann
Functional and quantitative proteomics using SILAC.
Nature reviews. Molecular cell biology 2006;7(12):952-8.
2006: Francesca Forner; Edgar A Arriaga; Matthias Mann
Mild protease treatment as a small-scale biochemical method for mitochondria purification and proteomic mapping of cytoplasm-exposed mitochondrial proteins.
Journal of proteome research 2006;5(12):3277-87.
2006: Matthias Selbach; Matthias Mann
Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).
Nature methods 2006;3(12):981-3.
2006: Alfred C O Vertegaal; Jens S Andersen; Stephen C Ogg; Ron Thomas Hay; Matthias Mann; Angus I Lamond
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics.
Molecular & cellular proteomics : MCP 2006;5(12):2298-310.
2006: Jesper V Olsen; Blagoy Blagoev; Florian Gnad; Boris Macek; Chanchal Kumar; Peter Mortensen; Matthias Mann
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
Cell 2006;127(3):635-48.
2006: Blagoy Blagoev; Matthias Mann
Quantitative proteomics to study mitogen-activated protein kinases.
Methods (San Diego, Calif.) 2006;40(3):243-50.
2006: Jens S Andersen; Matthias Mann
Organellar proteomics: turning inventories into insights.
EMBO reports 2006;7(9):874-9.
2006: Erica M Pasini; Morten Kirkegaard; Peter Mortensen; Hans U Lutz; Alan Thomas; Matthias Mann
In-depth analysis of the membrane and cytosolic proteome of red blood cells.
Blood 2006;108(3):791-801.
2006: Boris Macek; Leonie F Waanders; Jesper V Olsen; Matthias Mann
Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer.
Molecular & cellular proteomics : MCP 2006;5(5):949-58.
2006: Anders M Hinsby; Lars Kiemer; E Olof Karlberg; Kasper Lage; Anders Fausbøll; Agnieszka S Juncker; Jens S Andersen; Matthias Mann; Søren Brunak
A wiring of the human nucleolus.
Molecular cell 2006;22(2):285-95.
2006: Leonard J Foster; Carmen L De Hoog; Yanling Zhang; Yong Zhang; Xiaohui Xie; Vamsi K Mootha; Matthias Mann
A mammalian organelle map by protein correlation profiling.
Cell 2006;125(1):187-99.
2006: Yasushi Ishihama; Juri Rappsilber; Matthias Mann
Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics.
Journal of proteome research 2006;5(4):988-94.
2006: Laura Trinkle-Mulcahy; Jens Andersen; Yun Wah Lam; Greg B G Moorhead; Matthias Mann; Angus I Lamond
Repo-Man recruits PP1 gamma to chromatin and is essential for cell viability.
The Journal of cell biology 2006;172(5):679-92.
2006: Shao-En Ong; Matthias Mann
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC).
Nature protocols 2006;1(6):2650-60.
2006: Jun Adachi; Chanchal Kumar; Yanling Zhang; Jesper V Olsen; Matthias Mann
The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins.
Genome biology 2006;7(9):R80.
2006: Gustavo A De Souza; Lyris M F Godoy; Matthias Mann
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors.
Genome biology 2006;7(8):R72.
2006: Lyris M F de Godoy; Jesper V Olsen; Gustavo A de Souza; Guoqing Li; Peter Mortensen; Matthias Mann
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.
Genome biology 2006;7(6):R50.
2006: Bartosz Pilch; Matthias Mann
Large-scale and high-confidence proteomic analysis of human seminal plasma.
Genome biology 2006;7(5):R40.
2006: Ivan Mijakovic; Dina Petranovic; Boris Macek; Tina Cepo; Matthias Mann; Julian Davies; Peter R Jensen; Dusica Vujaklija
Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine.
Nucleic acids research 2006;34(5):1588-96.
2006: Leonard J Foster; Assaf Rudich; Ilana Talior; Nish Patel; Xudong Huang; L Michelle Furtado; Philip J Bilan; Matthias Mann; Amira Klip
Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC).
Journal of proteome research 2006;5(1):64-75.
2006: Thomas Kruse; Blagoy Blagoev; Anders Løbner-Olesen; Masaaki Wachi; Kumi Sasaki; Noritaka Iwai; Matthias Mann; Kenn Gerdes
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
Genes & development 2006;20(1):113-24.
2006: Leung Anthony; Laura Trinkle-Mulcahy; Yun Wah Lam; Jens S Andersen; Matthias Mann; Angus I Lamond
NOPdb: Nucleolar Proteome Database.
Nucleic acids research 2006;34(Database issue):D218-20.
2005: Jesper V Olsen; Lyris M F de Godoy; Guoqing Li; Boris Macek; Peter Mortensen; Reinhold Pesch; Alexander Makarov; Oliver Lange; Stevan Horning; Matthias Mann
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap.
Molecular & cellular proteomics : MCP 2005;4(12):2010-21.
2005: Albrecht Gruhler; waltraud Schulze; Rune Matthiesen; Matthias Mann; Ole N Jensen
Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry.
Molecular & cellular proteomics : MCP 2005;4(11):1697-709.
2005: Shao-En Ong; Matthias Mann
Mass spectrometry-based proteomics turns quantitative.
Nature chemical biology 2005;1(5):252-62.
2005: Yasushi Ishihama; Yoshiya Oda; Tsuyoshi Tabata; Toshitaka Sato; Takeshi Nagasu; Juri Rappsilber; Matthias Mann
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein.
Molecular & cellular proteomics : MCP 2005;4(9):1265-72.
2005: Michael J Kerner; Dean J Naylor; Yasushi Ishihama; Tobias Maier; Hung-Chun Chang; Anna stines; Costa Georgopoulos; Dmitrij Frishman; Manajit Hayer-Hartl; Matthias Mann; F Ulrich Hartl
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli.
Cell 2005;122(2):209-20.
2005: Shahid M Khan; Blandine Franke-Fayard; Gunnar R Mair; Edwin Lasonder; Chris J Janse; Matthias Mann; Andrew P Waters
Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology.
Cell 2005;121(5):675-87.
2005: Irina Kratchmarova; Blagoy Blagoev; Mandana Haack-Sorensen; Moustapha Kassem; Matthias Mann
Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation.
Science (New York, N.Y.) 2005;308(5727):1472-7.
2005: Peter Aa Nielsen; Jesper V Olsen; Alexandre Podtelejnikov; Jens R Andersen; Matthias Mann; Jacek R Wisniewski
Proteomic mapping of brain plasma membrane proteins.
Molecular & cellular proteomics : MCP 2005;4(4):402-8.
2005: Albrecht Gruhler; Jesper V Olsen; shabaz mohammed; Peter Mortensen; Nils Færgeman; Matthias Mann; Ole N Jensen
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.
Molecular & cellular proteomics : MCP 2005;4(3):310-27.
2005: Jens S Andersen; Yun Wah Lam; Leung Anthony; Shao-En Ong; Carol E Lyon; Angus I Lamond; Matthias Mann
Nucleolar proteome dynamics.
Nature 2005;433(7021):77-83.
2005: waltraud Schulze; Lei Deng; Matthias Mann
Phosphotyrosine interactome of the ErbB-receptor kinase family.
Molecular systems biology 2005;1():2005.0008.
2005: Alison F Pendle; Gillian P Clark; Reinier Boon; Dominika Lewandowska; Yun Wah Lam; Jens Andersen; Matthias Mann; Angus I Lamond; John W S Brown; Peter Shaw
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.
Molecular biology of the cell 2005;16(1):260-9.
2005: waltraud Schulze; Gerd Gleixner; Klaus Kaiser; Georg Guggenberger; Matthias Mann; Ernst-Detlef Schulze
A proteomic fingerprint of dissolved organic carbon and of soil particles.
Oecologia 2005;142(3):335-43.
2004: Anders M Hinsby; Jesper V Olsen; Matthias Mann
Tyrosine phosphoproteomics of fibroblast growth factor signaling: a role for insulin receptor substrate-4.
The Journal of biological chemistry 2004;279(45):46438-47.
2004: Shao-En Ong; Gerhard Mittler; Matthias Mann
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.
Nature methods 2004;1(2):119-26.
2004: Jesper V Olsen; Matthias Mann
Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(37):13417-22.
2004: Blagoy Blagoev; Shao-En Ong; Irina Kratchmarova; Matthias Mann
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics.
Nature biotechnology 2004;22(9):1139-45.
2004: Troels Zakarias Kristiansen; Mogens M Nielsen; Blagoy Blagoev; Akhilesh Pandey; Matthias Mann
Mouse embryonic fibroblasts derived from Odin deficient mice display a hyperproliiferative phenotype.
DNA research : an international journal for rapid publication of reports on genes and genomes 2004;11(4):285-92.
2004: Alfred C O Vertegaal; Stephen C Ogg; Ellis Jaffray; Manuel S Rodriguez; Ron Thomas Hay; Jens S Andersen; Matthias Mann; Angus I Lamond
A proteomic study of SUMO-2 target proteins.
The Journal of biological chemistry 2004;279(32):33791-8.
2004: Jesper V Olsen; Shao-En Ong; Matthias Mann
Trypsin cleaves exclusively C-terminal to arginine and lysine residues.
Molecular & cellular proteomics : MCP 2004;3(6):608-14.
2004: Carmen L De Hoog; Leonard J Foster; Matthias Mann
RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers.
Cell 2004;117(5):649-62.
2004: waltraud Schulze; Matthias Mann
A novel proteomic screen for peptide-protein interactions.
The Journal of biological chemistry 2004;279(11):10756-64.
2004: Chia C Chan; Josée Dostie; Michael D Diem; Wenqin Feng; Matthias Mann; Juri Rappsilber; Gideon Dreyfuss
eIF4A3 is a novel component of the exon junction complex.
RNA (New York, N.Y.) 2004;10(2):200-9.
2004: Nieves Ibarrola; Irina Kratchmarova; Daisuke Nakajima; William P Schiemann; Aristidis Moustakas; Akhilesh Pandey; Matthias Mann
Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling.
BMC cell biology 2004;5():2.
2004: Carmen L De Hoog; Matthias Mann
Proteomics.
Annual review of genomics and human genetics 2004;5():267-93.
2004: Jesper V Olsen; Jens R Andersen; Peter Aa Nielsen; Michael L Nielsen; Daniel Figeys; Matthias Mann; Jacek R Wisniewski
HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain.
Molecular & cellular proteomics : MCP 2004;3(1):82-92.
2003: Leung Anthony; Jens S Andersen; Matthias Mann; Angus I Lamond
Bioinformatic analysis of the nucleolus.
The Biochemical journal 2003;376(Pt 3):553-69.
2003: Jens S Andersen; Christopher J Wilkinson; Thibault Mayor; Peter Mortensen; Erich A Nigg; Matthias Mann
Proteomic characterization of the human centrosome by protein correlation profiling.
Nature 2003;426(6966):570-4.
2003: Vamsi K Mootha; Jakob Bunkenborg; Jesper V Olsen; Majbrit Hjerrild; Jacek R Wisniewski; Erich Stahl; Marjan S Bolouri; Heta N Ray; Smita Sihag; Michael Kamal; Nick Patterson; Eric S Lander; Matthias Mann
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.
Cell 2003;115(5):629-40.
2003: Juri Rappsilber; Westley J Friesen; Sergey Paushkin; Gideon Dreyfuss; Matthias Mann
Detection of arginine dimethylated peptides by parallel precursor ion scanning mass spectrometry in positive ion mode.
Analytical chemistry 2003;75(13):3107-14.
2003: Leonard J Foster; Carmen L De Hoog; Matthias Mann
Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(10):5813-8.
2003: Shao-En Ong; Irina Kratchmarova; Matthias Mann
Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC).
Journal of proteome research 2003;2(2):173-81.
2003: Hanno Steen; Minerva Fernandez; Saghi Ghaffari; Akhilesh Pandey; Matthias Mann
Phosphotyrosine mapping in Bcr/Abl oncoprotein using phosphotyrosine-specific immonium ion scanning.
Molecular & cellular proteomics : MCP 2003;2(3):138-45.
2003: Matthias Mann; Ole N Jensen
Proteomic analysis of post-translational modifications.
Nature biotechnology 2003;21(3):255-61.
2003: Blagoy Blagoev; Irina Kratchmarova; Shao-En Ong; Mogens Nielsen; Leonard J Foster; Matthias Mann
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling.
Nature biotechnology 2003;21(3):315-8.
2003: Shao-En Ong; Leonard J Foster; Matthias Mann
Mass spectrometric-based approaches in quantitative proteomics.
Methods (San Diego, Calif.) 2003;29(2):124-30.
2003: Juri Rappsilber; Yasushi Ishihama; Matthias Mann
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics.
Analytical chemistry 2003;75(3):663-70.
2003: Akhilesh Pandey; Suraj Peri; Colin Thacker; Chery A Whipple; John J Collins; Matthias Mann
Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome.
Bioinformatics (Oxford, England) 2003;19(2):169-72.
2003: Vamsi K Mootha; Pierre Lepage; Kathleen Miller; Jakob Bunkenborg; Michael Reich; Majbrit Hjerrild; Terrye Delmonte; Amelie Villeneuve; Robert Sladek; Fenghao Xu; Grant A Mitchell; Charles Morin; Matthias Mann; Thomas J Hudson; Brian Robinson; John D Rioux; Eric S Lander
Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(2):605-10.
2003: Anders M Hinsby; Jesper V Olsen; Keiryn Bennett; Matthias Mann
Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry.
Molecular & cellular proteomics : MCP 2003;2(1):29-36.
2002: Hanno Steen; Matthias Mann
Analysis of bromotryptophan and hydroxyproline modifications by high-resolution, high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tags.
Analytical chemistry 2002;74(24):6230-6.
2002: Yasushi Ishihama; Juri Rappsilber; Jens S Andersen; Matthias Mann
Microcolumns with self-assembled particle frits for proteomics.
Journal of chromatography. A 2002;979(1-2):233-9.
2002: Akhilesh Pandey; Blagoy Blagoev; Irina Kratchmarova; Minerva Fernandez; Mogens Nielsen; Troels Zakarias Kristiansen; Osamu Ohara; Alexandre Podtelejnikov; Serge Roche; Harvey Lodish; Matthias Mann
Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases.
Oncogene 2002;21(52):8029-36.
2002: Blagoy Blagoev; Irina Kratchmarova; Mogens M Nielsen; Minerva M Fernandez; Jesper Voldby; Jens S Andersen; Karsten Kristiansen; Akhilesh Pandey; Matthias Mann
Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature.
The Journal of biological chemistry 2002;277(44):42011-6.
2002: Edwin Lasonder; Yasushi Ishihama; Jens S Andersen; Adriaan M W Vermunt; Arnab Pain; Robert W Sauerwein; Wijnand Eling; Neil Hall; Andrew P Waters; Hendrik G Stunnenberg; Matthias Mann
Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry.
Nature 2002;419(6906):537-42.
2002: Jennifer Baccon; Livio Pellizzoni; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex.
The Journal of biological chemistry 2002;277(35):31957-62.
2002: Hanno Steen; Matthias Mann
A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode.
Journal of the American Society for Mass Spectrometry 2002;13(8):996-1003.
2002: Juri Rappsilber; Ursula Ryder; Angus I Lamond; Matthias Mann
Large-scale proteomic analysis of the human spliceosome.
Genome research 2002;12(8):1231-45.
2002: Juri Rappsilber; Matthias Mann
Is mass spectrometry ready for proteome-wide protein expression analysis?
Genome biology 2002;3(8):COMMENT2008.
2002: Mads Grønborg; Troels Zakarias Kristiansen; Allan Stensballe; Jens S Andersen; Osamu Ohara; Matthias Mann; Ole N Jensen; Akhilesh Pandey
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate.
Molecular & cellular proteomics : MCP 2002;1(7):517-27.
2002: Matthias Mann; Shao-En Ong; Mads Grønborg; Hanno Steen; Ole N Jensen; Akhilesh Pandey
Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome.
Trends in biotechnology 2002;20(6):261-8.
2002: Akhilesh Pandey; Ippeita Dan; Troels Zakarias Kristiansen; Norinobu M Watanabe; Jesper Voldby; Eriko Kajikawa; Roya Khosravi-Far; Blagoy Blagoev; Matthias Mann
Cloning and characterization of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain.
Oncogene 2002;21(24):3939-48.
2002: Akhilesh Pandey; Nieves Ibarrola; Irina Kratchmarova; Minerva M Fernandez; Stefan N Constantinescu; Osamu Ohara; Sansana Sawasdikosol; Harvey Lodish; Matthias Mann
A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling.
The Journal of biological chemistry 2002;277(21):19131-8.
2002: Shao-En Ong; Blagoy Blagoev; Irina Kratchmarova; Dan Bach Kristensen; Hanno Steen; Akhilesh Pandey; Matthias Mann
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Molecular & cellular proteomics : MCP 2002;1(5):376-86.
2002: Zissimos Mourelatos; Josée Dostie; Sergey Paushkin; Anup Sharma; Bernard Charroux; Linda Abel; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.
Genes & development 2002;16(6):720-8.
2002: Westley J Friesen; Anastasia Wyce; Sergey Paushkin; Linda Abel; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
A novel WD repeat protein component of the methylosome binds Sm proteins.
The Journal of biological chemistry 2002;277(10):8243-7.
2002: Irina Kratchmarova; Dario E Kalume; Blagoy Blagoev; Philipp E Scherer; Alexandre Podtelejnikov; Henrik Molina; Perry E Bickel; Jens S Andersen; Minerva M Fernandez; Jakob Bunkenborg; Peter Roepstorff; Karsten Kristiansen; Harvey Lodish; Matthias Mann; Akhilesh Pandey
A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes.
Molecular & cellular proteomics : MCP 2002;1(3):213-22.
2002: Livio Pellizzoni; Jennifer Baccon; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component.
The Journal of biological chemistry 2002;277(9):7540-5.
2002: Ippeita Dan; Shao-En Ong; Norinobu M Watanabe; Blagoy Blagoev; Mogens M Nielsen; Eriko Kajikawa; Troels Zakarias Kristiansen; Matthias Mann; Akhilesh Pandey
Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties.
The Journal of biological chemistry 2002;277(8):5929-39.
2002: Amelie K Gubitz; Zissimos Mourelatos; Linda Abel; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins.
The Journal of biological chemistry 2002;277(7):5631-6.
2002: Juri Rappsilber; Matthias Mann
What does it mean to identify a protein in proteomics?
Trends in biochemical sciences 2002;27(2):74-8.
2002: Hanno Steen; Bernhard Kuster; Minerva Fernandez; Akhilesh Pandey; Matthias Mann
Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway.
The Journal of biological chemistry 2002;277(2):1031-9.
2002: Archa Fox; Yun Wah Lam; Leung Anthony; Carol E Lyon; Jens Andersen; Matthias Mann; Angus I Lamond
Paraspeckles: a novel nuclear domain.
Current biology : CB 2002;12(1):13-25.
2002: Jens S Andersen; Carol E Lyon; Archa Fox; Leung Anthony; Yun Wah Lam; Hanno Steen; Matthias Mann; Angus I Lamond
Directed proteomic analysis of the human nucleolus.
Current biology : CB 2002;12(1):1-11.
2002: Michael L Nielsen; Keiryn Bennett; Brett Larsen; Marc Moniatte; Matthias Mann
Peptide end sequencing by orthogonal MALDI tandem mass spectrometry.
Journal of proteome research 2002;1(1):63-71.
2001: Westley J Friesen; Sergey Paushkin; Anastasia Wyce; Séverine Massenet; G S Pesiridis; Gregory D Van Duyne; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins.
Molecular and cellular biology 2001;21(24):8289-300.
2001: Suraj Peri; N Ibarrola; Blagoy Blagoev; Matthias Mann; Akhilesh Pandey
Common pitfalls in bioinformatics-based analyses: look before you leap.
Trends in genetics : TIG 2001;17(9):541-5.
2001: Juri Rappsilber; Paul Ajuh; Angus I Lamond; Matthias Mann
SPF30 is an essential human splicing factor required for assembly of the U4/U5/U6 tri-small nuclear ribonucleoprotein into the spliceosome.
The Journal of biological chemistry 2001;276(33):31142-50.
2001: Hanno Steen; B Küster; Matthias Mann
Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning.
Journal of mass spectrometry : JMS 2001;36(7):782-90.
2001: Philipp Milkereit; Olivier Gadal; Alexandre Podtelejnikov; S Trumtel; Nicole Gas; Elisabeth Petfalski; David Tollervey; Matthias Mann; Ed Hurt; Herbert Tschochner
Maturation and intranuclear transport of pre-ribosomes requires Noc proteins.
Cell 2001;105(4):499-509.
2001: B Küster; Peter Mortensen; Jens S Andersen; Matthias Mann
Mass spectrometry allows direct identification of proteins in large genomes.
Proteomics 2001;1(5):641-50.
2001: Hanno Steen; B Küster; Minerva Fernandez; Akhilesh Pandey; Matthias Mann
Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode.
Analytical chemistry 2001;73(7):1440-8.
2001: Hanno Steen; Matthias Mann
Similarity between condensed phase and gas phase chemistry: fragmentation of peptides containing oxidized cysteine residues and its implications for proteomics.
Journal of the American Society for Mass Spectrometry 2001;12(2):228-32.
2001: Livio Pellizzoni; Bernard Charroux; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
A functional interaction between the survival motor neuron complex and RNA polymerase II.
The Journal of cell biology 2001;152(1):75-85.
2001: Matthias Mann; Ronald Hendrickson; Akhilesh Pandey
Analysis of proteins and proteomes by mass spectrometry.
Annual review of biochemistry 2001;70():437-73.
2001: Matthias Mann; Akhilesh Pandey
Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases.
Trends in biochemical sciences 2001;26(1):54-61.
2000: Akhilesh Pandey; Minerva M Fernandez; Hanno Steen; Blagoy Blagoev; Mogens M Nielsen; S Roche; Matthias Mann; Harvey Lodish
Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways.
The Journal of biological chemistry 2000;275(49):38633-9.
2000: Paul Ajuh; Bernhard Kuster; Kostya I Panov; Joost Zomerdijk; Matthias Mann; Angus I Lamond
Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry.
The EMBO journal 2000;19(23):6569-81.
2000: Jens S Andersen; Matthias Mann
Functional genomics by mass spectrometry.
FEBS letters 2000;480(1):25-31.
2000: SM Bailer; C Balduf; Jun Katahira; Alexandre Podtelejnikov; Christiane Rollenhagen; Matthias Mann; N Pante; Ed Hurt
Nup116p associates with the Nup82p-Nsp1p-Nup159p nucleoporin complex.
The Journal of biological chemistry 2000;275(31):23540-8.
2000: Bernhard Kuster; Alla Shainskaya; Helen X Pu; Rivka Goldshleger; Rhoda Blostein; Matthias Mann; Steven J D Karlish
A new variant of the gamma subunit of renal Na,K-ATPase. Identification by mass spectrometry, antibody binding, and expression in cultured cells.
The Journal of biological chemistry 2000;275(24):18441-6.
2000: Akhilesh Pandey; Matthias Mann
Proteomics to study genes and genomes.
Nature 2000;405(6788):837-46.
2000: Stephan Fath; Philipp Milkereit; Alexandre Podtelejnikov; Nicolas Bischler; Patrick Schultz; Mirko Bier; Matthias Mann; Herbert Tschochner
Association of yeast RNA polymerase I with a nucleolar substructure active in rRNA synthesis and processing.
The Journal of cell biology 2000;149(3):575-90.
2000: Bernard Charroux; Livio Pellizzoni; RA Perkinson; Jeongsik Yong; A Shevchenko; Matthias Mann; Gideon Dreyfuss
Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli.
The Journal of cell biology 2000;148(6):1177-86.
2000: Juri Rappsilber; Symeon Siniossoglou; E C Hurt; Matthias Mann
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry.
Analytical chemistry 2000;72(2):267-75.
2000: D Lau; Markus Künzler; A Braunwarth; K Hellmuth; Alexandre Podtelejnikov; Matthias Mann; Ed Hurt
Purification of protein A-tagged yeast ran reveals association with a novel karyopherin beta family member, Pdr6p.
The Journal of biological chemistry 2000;275(1):467-71.
2000: B Kosova; Nelly Panté; Christiane Rollenhagen; Alexandre Podtelejnikov; Matthias Mann; Ueli Aebi; Ed Hurt
Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p.
The Journal of biological chemistry 2000;275(1):343-50.
2000: Akhilesh Pandey; Alexandre Podtelejnikov; Blagoy Blagoev; X R Bustelo; Matthias Mann; Harvey Lodish
Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(1):179-84.
2000: Andrej Shevchenko; IV Chernushevich; Matthias Wilm; Matthias Mann
De Novo peptide sequencing by nanoelectrospray tandem mass spectrometry using triple quadrupole and quadrupole/time-of-flight instruments.
Methods in molecular biology (Clifton, N.J.) 2000;146():1-16.
1999: Bernard Charroux; Livio Pellizzoni; RA Perkinson; A Shevchenko; Matthias Mann; Gideon Dreyfuss
Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems.
The Journal of cell biology 1999;147(6):1181-94.
1999: guillaume rigaut; Andrej Shevchenko; Berthold Rutz; Matthias Wilm; Matthias Mann; Bertrand Séraphin
A generic protein purification method for protein complex characterization and proteome exploration.
Nature biotechnology 1999;17(10):1030-2.
1999: Alexander Gottschalk; Gitte Neubauer; J Banroques; Matthias Mann; Reinhard Lührmann; Patrizia Fabrizio
Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.
The EMBO journal 1999;18(16):4535-48.
1999: Jun Katahira; Katja Strässer; Alexandre Podtelejnikov; Matthias Mann; Jae U. Jung; Ed Hurt
The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human.
The EMBO journal 1999;18(9):2593-609.
1999: B Küster; Matthias Mann
18O-labeling of N-glycosylation sites to improve the identification of gel-separated glycoproteins using peptide mass mapping and database searching.
Analytical chemistry 1999;71(7):1431-40.
1999: O N Jensen; Matthias Wilm; Andrej Shevchenko; Matthias Mann
Peptide sequencing of 2-DE gel-isolated proteins by nanoelectrospray tandem mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 1999;112():571-88.
1999: O N Jensen; Matthias Wilm; Andrej Shevchenko; Matthias Mann
Sample preparation methods for mass spectrometric peptide mapping directly from 2-DE gels.
Methods in molecular biology (Clifton, N.J.) 1999;112():513-30.
1999: G Neubauer; Matthias Mann
Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations.
Analytical chemistry 1999;71(1):235-42.
1998: Nicholas J Watkins; Alexander Gottschalk; Gitte Neubauer; Berthold Kastner; Patrizia Fabrizio; Matthias Mann; Reinhard Lührmann
Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.
RNA (New York, N.Y.) 1998;4(12):1549-68.
1998: Symeon Siniossoglou; Helena Santos-Rosa; Juri Rappsilber; Matthias Mann; Ed Hurt
A novel complex of membrane proteins required for formation of a spherical nucleus.
The EMBO journal 1998;17(22):6449-64.
1998: Gitte Neubauer; A King; Juri Rappsilber; C Calvio; M Watson; Paul Ajuh; Judith Sleeman; Angus I Lamond; Matthias Mann
Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.
Nature genetics 1998;20(1):46-50.
1998: Alexander Gottschalk; J Tang; Oscar Puig; J Salgado; Gitte Neubauer; H V Colot; Matthias Mann; Bertrand Séraphin; M Rosbash; Reinhard Lührmann; Patrizia Fabrizio
A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.
RNA (New York, N.Y.) 1998;4(4):374-93.
1998: SM Bailer; Symeon Siniossoglou; Alexandre Podtelejnikov; Andrea Hellwig; Matthias Mann; Ed Hurt
Nup116p and nup100p are interchangeable through a conserved motif which constitutes a docking site for the mRNA transport factor gle2p.
The EMBO journal 1998;17(4):1107-19.
1998: Hsing-Yin Liu; V Badarinarayana; D C Audino; J Rappsilber; Matthias Mann; Clyde L Denis
The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively.
The EMBO journal 1998;17(4):1096-106.
1997: O N Jensen; Alexandre Podtelejnikov; Matthias Mann
Identification of the components of simple protein mixtures by high-accuracy peptide mass mapping and database searching.
Analytical chemistry 1997;69(23):4741-50.
1997: P Mitchell; Elisabeth Petfalski; Andrej Shevchenko; Matthias Mann; David Tollervey
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.
Cell 1997;91(4):457-66.
1997: Paola Grandi; T Dang; N Pané; A Shevchenko; Matthias Mann; D Forbes; Ed Hurt
Nup93, a vertebrate homologue of yeast Nic96p, forms a complex with a novel 205-kDa protein and is required for correct nuclear pore assembly.
Molecular biology of the cell 1997;8(10):2017-38.
1997: Kelly M McNagny; I Pettersson; F Rossi; Ingo Flamme; Andrej Shevchenko; Matthias Mann; Thomas Graf
Thrombomucin, a novel cell surface protein that defines thrombocytes and multipotent hematopoietic progenitors.
The Journal of cell biology 1997;138(6):1395-407.
1997: H Horiuchi; R Lippé; Heidi McBride; M Rubino; Philip G Woodman; Harald Stenmark; Vladimir Rybin; Matthias Wilm; K Ashman; Matthias Mann; Marino Zerial
A novel Rab5 GDP/GTP exchange factor complexed to Rabaptin-5 links nucleotide exchange to effector recruitment and function.
Cell 1997;90(6):1149-59.
1997: Maria Teresa Teixeira; Symeon Siniossoglou; S Podtelejnikov; J C Bénichou; Matthias Mann; Bernard Dujon; Ed Hurt; Emmanuelle FABRE
Two functionally distinct domains generated by in vivo cleavage of Nup145p: a novel biogenesis pathway for nucleoporins.
The EMBO journal 1997;16(16):5086-97.
1997: Patrick Varga-Weisz; Matthias Wilm; EJ Bonte; K Dumas; Matthias Mann; Peter B Becker
Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II.
Nature 1997;388(6642):598-602.
1997: Andrej Shevchenko; Matthias Wilm; Matthias Mann
Peptide sequencing by mass spectrometry for homology searches and cloning of genes.
Journal of protein chemistry 1997;16(5):481-90.
1997: Tony Houthaeve; H Gausepohl; K Ashman; T Nillson; Matthias Mann
Automated protein preparation techniques using a digest robot.
Journal of protein chemistry 1997;16(5):343-8.
1997: Dirk H Ostareck; Antje Ostareck-Lederer; Matthias Wilm; Bernd-Joachim Thiele; Matthias Mann; Matthias W Hentze
mRNA silencing in erythroid differentiation: hnRNP K and hnRNP E1 regulate 15-lipoxygenase translation from the 3' end.
Cell 1997;89(4):597-606.
1997: O N Jensen; P Mortensen; O Vorm; Matthias Mann
Automation of matrix-assisted laser desorption/ionization mass spectrometry using fuzzy logic feedback control.
Analytical chemistry 1997;69(9):1706-14.
1997: J Lingner; T R Hughes; A Shevchenko; Matthias Mann; V Lundblad; Thomas R Cech
Reverse transcriptase motifs in the catalytic subunit of telomerase.
Science (New York, N.Y.) 1997;276(5312):561-7.
1997: Gitte Neubauer; Alexander Gottschalk; Patrizia Fabrizio; Bertrand Séraphin; Reinhard Lührmann; Matthias Mann
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(2):385-90.
1997: Andrej Shevchenko; IV Chernushevich; Werner Ens; Kenneth G Standing; B Thomson; Matthias Wilm; Matthias Mann
Rapid 'de novo' peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer.
Rapid communications in mass spectrometry : RCM 1997;11(9):1015-24.
1996: Andrej Shevchenko; O N Jensen; Alexandre Podtelejnikov; F Sagliocco; Matthias Wilm; O Vorm; P Mortensen; A Shevchenko; Hélian Boucherie; Matthias Mann
Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(25):14440-5.
1996: O N Jensen; Tony Houthaeve; Andrej Shevchenko; S Cudmore; T Ashford; Matthias Mann; Gareth Griffiths; J Krijnse Locker
Identification of the major membrane and core proteins of vaccinia virus by two-dimensional electrophoresis.
Journal of virology 1996;70(11):7485-97.
1996: George Simos; A Segref; Franco Fasiolo; K Hellmuth; A Shevchenko; Matthias Mann; E C Hurt
The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases.
The EMBO journal 1996;15(19):5437-48.
1996: A Weijland; Gitte Neubauer; Sara A Courtneidge; Matthias Mann; Rik K Wierenga; Giulio Superti-Furga
The purification and characterization of the catalytic domain of Src expressed in Schizosaccharomyces pombe. Comparison of unphosphorylated and tyrosine phosphorylated species.
European journal of biochemistry / FEBS 1996;240(3):756-64.
1996: E Mørtz; P B O'Connor; Peter Roepstorff; Neil L Kelleher; Troy D Wood; Fred W McLafferty; Matthias Mann
Sequence tag identification of intact proteins by matching tanden mass spectral data against sequence data bases.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(16):8264-7.
1996: Andrej Shevchenko; Matthias Wilm; O Vorm; O N Jensen; Alexandre Podtelejnikov; Gitte Neubauer; A Shevchenko; P Mortensen; Matthias Mann
A strategy for identifying gel-separated proteins in sequence databases by MS alone.
Biochemical Society transactions 1996;24(3):893-6.
1996: O N Jensen; O Vorm; Matthias Mann
Sequence patterns produced by incomplete enzymatic digestion or one-step Edman degradation of peptide mixtures as probes for protein database searches.
Electrophoresis 1996;17(5):938-44.
1996: Andrej Shevchenko; Matthias Wilm; O Vorm; Matthias Mann
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.
Analytical chemistry 1996;68(5):850-8.
1996: Matthias Wilm; Gitte Neubauer; Matthias Mann
Parent ion scans of unseparated peptide mixtures.
Analytical chemistry 1996;68(3):527-33.
1996: Matthias Wilm; Andrej Shevchenko; Tony Houthaeve; Stephen Breit; Lothar Schweigerer; Theodore Fotsis; Matthias Mann
Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry.
Nature 1996;379(6564):466-9.
1996: O N Jensen; Alexandre Podtelejnikov; Matthias Mann
Delayed extraction improves specificity in database searches by matrix-assisted laser desorption/ionization peptide maps.
Rapid communications in mass spectrometry : RCM 1996;10(11):1371-8.
1996: Matthias Wilm; Matthias Mann
Analytical properties of the nanoelectrospray ion source.
Analytical chemistry 1996;68(1):1-8.
1996: G Talbo; Matthias Mann
Aspects of the sequencing of carbohydrates and oligonucleotides by matrix-assisted laser desorption/ionization post-source decay.
Rapid communications in mass spectrometry : RCM 1996;10(1):100-3.
1995: Tony Houthaeve; H Gausepohl; Matthias Mann; K Ashman
Automation of micro-preparation and enzymatic cleavage of gel electrophoretically separated proteins.
FEBS letters 1995;376(1-2):91-4.
1995: C Calvio; Gitte Neubauer; Matthias Mann; Angus I Lamond
Identification of hnRNP P2 as TLS/FUS using electrospray mass spectrometry.
RNA (New York, N.Y.) 1995;1(7):724-33.
1994: Matthias Mann; Matthias Wilm
Error-tolerant identification of peptides in sequence databases by peptide sequence tags.
Analytical chemistry 1994;66(24):4390-9.
1994: E Mørtz; O Vorm; Matthias Mann; Peter Roepstorff
Identification of proteins in polyacrylamide gels by mass spectrometric peptide mapping combined with database search.
Biological mass spectrometry 1994;23(5):249-61.
1993: K Morand; G Talbo; Matthias Mann
Oxidation of peptides during electrospray ionization.
Rapid communications in mass spectrometry : RCM 1993;7(8):738-43.
1993: Matthias Mann; P Højrup; Peter Roepstorff
Use of mass spectrometric molecular weight information to identify proteins in sequence databases.
Biological mass spectrometry 1993;22(6):338-45.