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Matthias Mann

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Procedures

Chemicals & Drugs

Anatomy

Hela Cells

Phenomena

Living Beings

Mice

Physiology

Signal Transduction

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Publications

TOP 3
Waanders Leonie F; Chwalek Karolina; Monetti Mara; Kumar Chanchal; Lammert Eckhard; Mann Matthias
Quantitative proteomic analysis of single pancreatic islets.
Choudhary Chunaram; Olsen Jesper V; Brandts Christian; Cox Jürgen; Reddy Pavankumar N G; Böhmer Frank D; Gerke Volker; Schmidt-Arras Dirk-E; Berdel Wolfgang E; Müller-Tidow Carsten; Mann Matthias; Serve Hubert
Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes.
Forner Francesca; Kumar Chanchal; Luber Christian A; Fromme Tobias; Klingenspor Martin; Mann Matthias
Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions.

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All Publications

2009: Waanders Leonie F; Chwalek Karolina; Monetti Mara; Kumar Chanchal; Lammert Eckhard; Mann Matthias
Quantitative proteomic analysis of single pancreatic islets.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(45):18902-7.
2009: Choudhary Chunaram; Olsen Jesper V; Brandts Christian; Cox Jürgen; Reddy Pavankumar N G; Böhmer Frank D; Gerke Volker; Schmidt-Arras Dirk-E; Berdel Wolfgang E; Müller-Tidow Carsten; Mann Matthias; Serve Hubert
Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes.
Molecular cell 2009;36(2):326-39.
2009: Forner Francesca; Kumar Chanchal; Luber Christian A; Fromme Tobias; Klingenspor Martin; Mann Matthias
Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions.
Cell metabolism 2009;10(4):324-35.
2009: Lu Aiping; Zougman Alexandre; Pudelko Marek; Bebenek Marek; Ziólkowski Piotr; Mann Matthias; Wisniewski Jacek R
Mapping of lysine monomethylation of linker histones in human breast and its cancer.
Journal of proteome research 2009;8(9):4207-15.
2009: Choudhary Chunaram; Kumar Chanchal; Gnad Florian; Nielsen Michael L; Rehman Michael; Walther Tobias C; Olsen Jesper V; Mann Matthias
Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Science (New York, N.Y.) 2009;325(5942):834-40.
2009: Cox Jürgen; Mann Matthias
Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap.
Journal of the American Society for Mass Spectrometry 2009;20(8):1477-85.
2009: Zielinska Dorota F; Gnad Florian; Jedrusik-Bode Monika; Wisniewski Jacek R; Mann Matthias
Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins.
Journal of proteome research 2009;8(8):4039-49.
2009: Hilger Maximiliane; Bonaldi Tiziana; Gnad Florian; Mann Matthias
Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics.
Molecular & cellular proteomics : MCP 2009;8(8):1908-20.
2009: Nickell Stephan; Beck Florian; Scheres Sjors H W; Korinek Andreas; Förster Friedrich; Lasker Keren; Mihalache Oana; Sun Na; Nagy István; Sali Andrej; Plitzko Jürgen M; Carazo Jose-Maria; Mann Matthias; Baumeister Wolfgang
Insights into the molecular architecture of the 26S proteasome.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(29):11943-7.
2009: Oppermann Felix S; Gnad Florian; Olsen Jesper V; Hornberger Renate; Greff Zoltán; Kéri György; Mann Matthias; Daub Henrik
Large-scale proteomics analysis of the human kinome.
Molecular & cellular proteomics : MCP 2009;8(7):1751-64.
2009: Fröhlich Florian; Moreira Karen; Aguilar Pablo S; Hubner Nina C; Mann Matthias; Walter Peter; Walther Tobias C
A genome-wide screen for genes affecting eisosomes reveals Nce102 function in sphingolipid signaling.
The Journal of cell biology 2009;185(7):1227-42.
2009: Butter Falk; Scheibe Marion; Mörl Mario; Mann Matthias
Unbiased RNA-protein interaction screen by quantitative proteomics.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(26):10626-31.
2009: Kumar Chanchal; Mann Matthias
Bioinformatics analysis of mass spectrometry-based proteomics data sets.
FEBS letters 2009;583(11):1703-12.
2009: Wisniewski Jacek R; Zougman Alexandre; Nagaraj Nagarjuna; Mann Matthias
Universal sample preparation method for proteome analysis.
Nature methods 2009;6(5):359-62.
2009: Lu Aiping; Wisniewski Jacek R; Mann Matthias
Comparative proteomic profiling of membrane proteins in rat cerebellum, spinal cord, and sciatic nerve.
Journal of proteome research 2009;8(5):2418-25.
2009: Selbach Matthias; Paul Florian Ernst; Brandt Sabine; Guye Patrick; Daumke Oliver; Backert Steffen; Dehio Christoph; Mann Matthias
Host cell interactome of tyrosine-phosphorylated bacterial proteins.
Cell host & microbe 2009;5(4):397-403.
2009: Hanke Stefan; Mann Matthias
The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2.
Molecular & cellular proteomics : MCP 2009;8(3):519-34.
2009: Pan Cuiping; Kumar Chanchal; Bohl Sebastian; Klingmueller Ursula; Mann Matthias
Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions.
Molecular & cellular proteomics : MCP 2009;8(3):443-50.
2009: Mittler Gerhard; Butter Falk; Mann Matthias
A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements.
Genome research 2009;19(2):284-93.
2009: Golebiowski Filip; Matic Ivan; Tatham Michael H; Cole Christian; Yin Yili; Nakamura Akihiro; Cox Jürgen; Barton Geoffrey J; Mann Matthias; Hay Ronald T
System-wide changes to SUMO modifications in response to heat shock.
Science signaling 2009;2(72):ra24.
2009: Cox Jürgen; Matic Ivan; Hilger Maximiliane; Nagaraj Nagarjuna; Selbach Matthias; Olsen Jesper V; Mann Matthias
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.
Nature protocols 2009;4(5):698-705.
2009: Aivaliotis Michalis; Macek Boris; Gnad Florian; Reichelt Peter; Mann Matthias; Oesterhelt Dieter
Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life.
PloS one 2009;4(3):e4777.
2009: Macek Boris; Mann Matthias; Olsen Jesper V
Global and site-specific quantitative phosphoproteomics: principles and applications.
Annual review of pharmacology and toxicology 2009;49():199-221.
2008: Zanivan Sara; Gnad Florian; Wickström Sara A; Geiger Tami; Macek Boris; Cox Jürgen; Fässler Reinhard; Mann Matthias
Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry.
Journal of proteome research 2008;7(12):5314-26.
2008: Cox Jürgen; Mann Matthias
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.
Nature biotechnology 2008;26(12):1367-72.
2008: Cox Jürgen; Hubner Nina C; Mann Matthias
How much peptide sequence information is contained in ion trap tandem mass spectra?
Journal of the American Society for Mass Spectrometry 2008;19(12):1813-20.
2008: Zougman Alexandre; Ziólkowski Piotr; Mann Matthias; Wisniewski Jacek R
Evidence for insertional RNA editing in humans.
Current biology : CB 2008;18(22):1760-5.
2008: Pan Cuiping; Gnad Florian; Olsen Jesper V; Mann Matthias
Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors.
Proteomics 2008;8(21):4534-46.
2008: Mann Matthias; Kelleher Neil L
Precision proteomics: the case for high resolution and high mass accuracy.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(47):18132-8.
2008: Schimmel Joost; Larsen Katja M; Matic Ivan; van Hagen Martijn; Cox Jürgen; Mann Matthias; Andersen Jens S; Vertegaal Alfred C O
The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle.
Molecular & cellular proteomics : MCP 2008;7(11):2107-22.
2008: Wisniewski Jacek R; Zougman Alexandre; Krüger Sonja; Ziólkowski Piotr; Pudelko Marek; Bebenek Marek; Mann Matthias
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics.
Proteins 2008;73(3):710-8.
2008: Rosenstierne Maiken W; Vinther Jeppe; Mittler Gerhard; Larsen Louise; Mann Matthias; Norrild Bodil
Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis.
Anticancer research 2008;28(5A):2553-9.
2008: Bonaldi Tiziana; Straub Tobias; Cox Jürgen; Kumar Chanchal; Becker Peter B; Mann Matthias
Combined use of RNAi and quantitative proteomics to study gene function in Drosophila.
Molecular cell 2008;31(5):762-72.
2008: Matic Ivan; Macek Boris; Hilger Maximiliane; Walther Tobias C; Mann Matthias
Phosphorylation of SUMO-1 occurs in vivo and is conserved through evolution.
Journal of proteome research 2008;7(9):4050-7.
2008: Soufi Boumediene; Gnad Florian; Jensen Peter Ruhdal; Petranovic Dina; Mann Matthias; Mijakovic Ivan; Macek Boris
The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.
Proteomics 2008;8(17):3486-93.
2008: Mertins Philipp; Eberl H Christian; Renkawitz Jörg; Olsen Jesper V; Tremblay Michel L; Mann Matthias; Ullrich Axel; Daub Henrik
Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
Molecular & cellular proteomics : MCP 2008;7(9):1763-77.
2008: Daub Henrik; Olsen Jesper V; Bairlein Michaela; Gnad Florian; Oppermann Felix S; Körner Roman; Greff Zoltán; Kéri György; Stemmann Olaf; Mann Matthias
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.
Molecular cell 2008;31(3):438-48.
2008: Vermeulen Michiel; Hubner Nina C; Mann Matthias
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
Current opinion in biotechnology 2008;19(4):331-7.
2008: Waanders Leonie F; Almeida Reinaldo; Prosser Simon; Cox Jürgen; Eikel Daniel; Allen Mark H; Schultz Gary A; Mann Matthias
A novel chromatographic method allows on-line reanalysis of the proteome.
Molecular & cellular proteomics : MCP 2008;7(8):1452-9.
2008: Krüger Marcus; Moser Markus; Ussar Siegfried; Thievessen Ingo; Luber Christian A; Forner Francesca; Schmidt Sarah; Zanivan Sara; Fässler Reinhard; Mann Matthias
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function.
Cell 2008;134(2):353-64.
2008: Macek Boris; Benda Christian; Jestel Anja; Maskos Klaus; Mann Matthias; Messerschmidt Albrecht
Phosphorylation of the human full-length protein kinase Ciota.
Journal of proteome research 2008;7(7):2928-35.
2008: Graumann Johannes; Hubner Nina C; Kim Jeong Beom; Ko Kinarm; Moser Markus; Kumar Chanchal; Cox Jürgen; Schöler Hans; Mann Matthias
Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins.
Molecular & cellular proteomics : MCP 2008;7(4):672-83.
2008: Hanke Stefan; Besir Hüseyin; Oesterhelt Dieter; Mann Matthias
Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level.
Journal of proteome research 2008;7(3):1118-30.
2008: Krüger Marcus; Kratchmarova Irina; Blagoev Blagoy; Tseng Yu-Hua; Kahn C Ronald; Mann Matthias
Dissection of the insulin signaling pathway via quantitative phosphoproteomics.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(7):2451-6.
2008: Wisniewski Jacek R; Zougman Alexandre; Mann Matthias
Nepsilon-formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function.
Nucleic acids research 2008;36(2):570-7.
2008: Zougman Alexandre; Pilch Bartosz; Podtelejnikov Alexandre; Kiehntopf Michael; Schnabel Claudia; Kumar Chanchal; Mann Matthias
Integrated analysis of the cerebrospinal fluid peptidome and proteome.
Journal of proteome research 2008;7(1):386-99.
2008: Mann Karlheinz; Mann Matthias
The chicken egg yolk plasma and granule proteomes.
Proteomics 2008;8(1):178-91.
2008: Matic Ivan; van Hagen Martijn; Schimmel Joost; Macek Boris; Ogg Stephen C; Tatham Michael H; Hay Ronald T; Lamond Angus I; Mann Matthias; Vertegaal Alfred C O
In vivo identification of human small ubiquitin-like modifier polymerization sites by high accuracy mass spectrometry and an in vitro to in vivo strategy.
Molecular & cellular proteomics : MCP 2008;7(1):132-44.
2008: Miller Martin Lee; Hanke Stefan; Hinsby Anders Mørkeberg; Friis Carsten; Brunak Søren; Mann Matthias; Blom Nikolaj
Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2.
Molecular & cellular proteomics : MCP 2008;7(1):181-92.
2008: Mann Karlheinz; Poustka Albert J; Mann Matthias
In-depth, high-accuracy proteomics of sea urchin tooth organic matrix.
Proteome science 2008;6():33.
2008: Schenk Susann; Schoenhals Gary J; de Souza Gustavo; Mann Matthias
A high confidence, manually validated human blood plasma protein reference set.
BMC medical genomics 2008;1():41.
2008: Mann Karlheinz; Poustka Albert J; Mann Matthias
The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes.
Proteome science 2008;6():22.
2007: Schröder Bernd; Wrocklage Christian; Pan Cuiping; Jäger Ralf; Kösters Bernd; Schäfer Helmut; Elsässer Hans-Peter; Mann Matthias; Hasilik Andrej
Integral and associated lysosomal membrane proteins.
Traffic (Copenhagen, Denmark) 2007;8(12):1676-86.
2007: Waanders Leonie F; Hanke Stefan; Mann Matthias
Top-down quantitation and characterization of SILAC-labeled proteins.
Journal of the American Society for Mass Spectrometry 2007;18(11):2058-64.
2007: Kirmizis Antonis; Santos-Rosa Helena; Penkett Christopher J; Singer Michael A; Vermeulen Michiel; Mann Matthias; Bähler Jürg; Green Roland D; Kouzarides Tony
Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation.
Nature 2007;449(7164):928-32.
2007: Vermeulen Michiel; Mulder Klaas W; Denissov Sergei; Pijnappel W W M Pim; van Schaik Frederik M A; Varier Radhika A; Baltissen Marijke P A; Stunnenberg Henk G; Mann Matthias; Timmers H Th Marc
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.
Cell 2007;131(1):58-69.
2007: Olsen Jesper V; Macek Boris; Lange Oliver; Makarov Alexander; Horning Stevan; Mann Matthias
Higher-energy C-trap dissociation for peptide modification analysis.
Nature methods 2007;4(9):709-12.
2007: Cox Jürgen; Mann Matthias
Is proteomics the new genomics?
Cell 2007;130(3):395-8.
2007: Shi Rong; Kumar Chanchal; Zougman Alexandre; Zhang Yanling; Podtelejnikov Alexandre; Cox Jürgen; Wisniewski Jacek R; Mann Matthias
Analysis of the mouse liver proteome using advanced mass spectrometry.
Journal of proteome research 2007;6(8):2963-72.
2007: Adachi Jun; Kumar Chanchal; Zhang Yanling; Mann Matthias
In-depth analysis of the adipocyte proteome by mass spectrometry and bioinformatics.
Molecular & cellular proteomics : MCP 2007;6(7):1257-73.
2007: Dengjel Joern; Akimov Vyacheslav; Olsen Jesper V; Bunkenborg Jakob; Mann Matthias; Blagoev Blagoy; Andersen Jens S
Quantitative proteomic assessment of very early cellular signaling events.
Nature biotechnology 2007;25(5):566-8.
2007: Lam Yun Wah; Lamond Angus I; Mann Matthias; Andersen Jens S
Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins.
Current biology : CB 2007;17(9):749-60.
2007: Klein Christian; Aivaliotis Michalis; Olsen Jesper V; Falb Michaela; Besir Hüseyin; Scheffer Beatrix; Bisle Birgit; Tebbe Andreas; Konstantinidis Kosta; Siedler Frank; Pfeiffer Friedhelm; Mann Matthias; Oesterhelt Dieter
The low molecular weight proteome of Halobacterium salinarum.
Journal of proteome research 2007;6(4):1510-8.
2007: Macek Boris; Mijakovic Ivan; Olsen Jesper V; Gnad Florian; Kumar Chanchal; Jensen Peter R; Mann Matthias
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.
Molecular & cellular proteomics : MCP 2007;6(4):697-707.
2007: Olsen Jesper V; Nielsen Peter Aa; Andersen Jens R; Mann Matthias; Wisniewski Jacek R
Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels.
Brain research 2007;1134(1):95-106.
2007: Mann Karlheinz; Olsen Jesper V; Macek Boris; Gnad Florian; Mann Matthias
Phosphoproteins of the chicken eggshell calcified layer.
Proteomics 2007;7(1):106-15.
2007: Zhang Yanling; Zhang Yong; Adachi Jun; Olsen Jesper V; Shi Rong; de Souza Gustavo; Pasini Erica; Foster Leonard J; Macek Boris; Zougman Alexandre; Kumar Chanchal; Wisniewski Jacek R; Jun Wang; Mann Matthias
MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.
Nucleic acids research 2007;35(Database issue):D771-9.
2007: Wisniewski Jacek R; Zougman Alexandre; Krüger Sonja; Mann Matthias
Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations, and phosphorylation as well as differences between cell culture and tissue.
Molecular & cellular proteomics : MCP 2007;6(1):72-87.
2007: Gnad Florian; Ren Shubin; Cox Juergen; Olsen Jesper V; Macek Boris; Oroshi Mario; Mann Matthias
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites.
Genome biology 2007;8(11):R250.
2007: Rappsilber Juri; Mann Matthias; Ishihama Yasushi
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips.
Nature protocols 2007;2(8):1896-906.
2007: Ong Shao-En; Mann Matthias
Stable isotope labeling by amino acids in cell culture for quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) 2007;359():37-52.
2006: Mann Matthias
Functional and quantitative proteomics using SILAC.
Nature reviews. Molecular cell biology 2006;7(12):952-8.
2006: Forner Francesca; Arriaga Edgar A; Mann Matthias
Mild protease treatment as a small-scale biochemical method for mitochondria purification and proteomic mapping of cytoplasm-exposed mitochondrial proteins.
Journal of proteome research 2006;5(12):3277-87.
2006: Selbach Matthias; Mann Matthias
Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).
Nature methods 2006;3(12):981-3.
2006: Vertegaal Alfred C O; Andersen Jens S; Ogg Stephen C; Hay Ronald T; Mann Matthias; Lamond Angus I
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics.
Molecular & cellular proteomics : MCP 2006;5(12):2298-310.
2006: Olsen Jesper V; Blagoev Blagoy; Gnad Florian; Macek Boris; Kumar Chanchal; Mortensen Peter; Mann Matthias
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
Cell 2006;127(3):635-48.
2006: Blagoev Blagoy; Mann Matthias
Quantitative proteomics to study mitogen-activated protein kinases.
Methods (San Diego, Calif.) 2006;40(3):243-50.
2006: Andersen Jens S; Mann Matthias
Organellar proteomics: turning inventories into insights.
EMBO reports 2006;7(9):874-9.
2006: Pasini Erica M; Kirkegaard Morten; Mortensen Peter; Lutz Hans U; Thomas Alan W; Mann Matthias
In-depth analysis of the membrane and cytosolic proteome of red blood cells.
Blood 2006;108(3):791-801.
2006: Macek Boris; Waanders Leonie F; Olsen Jesper V; Mann Matthias
Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer.
Molecular & cellular proteomics : MCP 2006;5(5):949-58.
2006: Hinsby Anders M; Kiemer Lars; Karlberg E Olof; Lage Kasper; Fausbøll Anders; Juncker Agnieszka S; Andersen Jens S; Mann Matthias; Brunak Søren
A wiring of the human nucleolus.
Molecular cell 2006;22(2):285-95.
2006: Foster Leonard J; de Hoog Carmen L; Zhang Yanling; Zhang Yong; Xie Xiaohui; Mootha Vamsi K; Mann Matthias
A mammalian organelle map by protein correlation profiling.
Cell 2006;125(1):187-99.
2006: Ishihama Yasushi; Rappsilber Juri; Mann Matthias
Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics.
Journal of proteome research 2006;5(4):988-94.
2006: Trinkle-Mulcahy Laura; Andersen Jens; Lam Yun Wah; Moorhead Greg; Mann Matthias; Lamond Angus I
Repo-Man recruits PP1 gamma to chromatin and is essential for cell viability.
The Journal of cell biology 2006;172(5):679-92.
2006: Foster Leonard J; Rudich Assaf; Talior Ilana; Patel Nish; Huang Xudong; Furtado L Michelle; Bilan Philip J; Mann Matthias; Klip Amira
Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC).
Journal of proteome research 2006;5(1):64-75.
2006: Kruse Thomas; Blagoev Blagoy; Løbner-Olesen Anders; Wachi Masaaki; Sasaki Kumi; Iwai Noritaka; Mann Matthias; Gerdes Kenn
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
Genes & development 2006;20(1):113-24.
2006: Leung Anthony Kar Lun; Trinkle-Mulcahy Laura; Lam Yun Wah; Andersen Jens S; Mann Matthias; Lamond Angus I
NOPdb: Nucleolar Proteome Database.
Nucleic acids research 2006;34(Database issue):D218-20.
2006: Ong Shao-En; Mann Matthias
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC).
Nature protocols 2006;1(6):2650-60.
2006: Adachi Jun; Kumar Chanchal; Zhang Yanling; Olsen Jesper V; Mann Matthias
The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins.
Genome biology 2006;7(9):R80.
2006: de Souza Gustavo A; Godoy Lyris M F; Mann Matthias
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors.
Genome biology 2006;7(8):R72.
2006: de Godoy Lyris M F; Olsen Jesper V; de Souza Gustavo A; Li Guoqing; Mortensen Peter; Mann Matthias
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.
Genome biology 2006;7(6):R50.
2006: Pilch Bartosz; Mann Matthias
Large-scale and high-confidence proteomic analysis of human seminal plasma.
Genome biology 2006;7(5):R40.
2006: Mijakovic Ivan; Petranovic Dina; Macek Boris; Cepo Tina; Mann Matthias; Davies Julian; Jensen Peter R; Vujaklija Dusica
Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine.
Nucleic acids research 2006;34(5):1588-96.
2005: Olsen Jesper V; de Godoy Lyris M F; Li Guoqing; Macek Boris; Mortensen Peter; Pesch Reinhold; Makarov Alexander; Lange Oliver; Horning Stevan; Mann Matthias
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap.
Molecular & cellular proteomics : MCP 2005;4(12):2010-21.
2005: Gruhler Albrecht; Schulze Waltraud X; Matthiesen Rune; Mann Matthias; Jensen Ole N
Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry.
Molecular & cellular proteomics : MCP 2005;4(11):1697-709.
2005: Ong Shao-En; Mann Matthias
Mass spectrometry-based proteomics turns quantitative.
Nature chemical biology 2005;1(5):252-62.
2005: Ishihama Yasushi; Oda Yoshiya; Tabata Tsuyoshi; Sato Toshitaka; Nagasu Takeshi; Rappsilber Juri; Mann Matthias
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein.
Molecular & cellular proteomics : MCP 2005;4(9):1265-72.
2005: Kerner Michael J; Naylor Dean J; Ishihama Yasushi; Maier Tobias; Chang Hung-Chun; Stines Anna P; Georgopoulos Costa; Frishman Dmitrij; Hayer-Hartl Manajit; Mann Matthias; Hartl F Ulrich
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli.
Cell 2005;122(2):209-20.
2005: Khan Shahid M; Franke-Fayard Blandine; Mair Gunnar R; Lasonder Edwin; Janse Chris J; Mann Matthias; Waters Andrew P
Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology.
Cell 2005;121(5):675-87.
2005: Kratchmarova Irina; Blagoev Blagoy; Haack-Sorensen Mandana; Kassem Moustapha; Mann Matthias
Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation.
Science (New York, N.Y.) 2005;308(5727):1472-7.
2005: Nielsen Peter Aa; Olsen Jesper V; Podtelejnikov Alexandre V; Andersen Jens R; Mann Matthias; Wisniewski Jacek R
Proteomic mapping of brain plasma membrane proteins.
Molecular & cellular proteomics : MCP 2005;4(4):402-8.
2005: Gruhler Albrecht; Olsen Jesper V; Mohammed Shabaz; Mortensen Peter; Faergeman Nils J; Mann Matthias; Jensen Ole N
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.
Molecular & cellular proteomics : MCP 2005;4(3):310-27.
2005: Andersen Jens S; Lam Yun W; Leung Anthony K L; Ong Shao-En; Lyon Carol E; Lamond Angus I; Mann Matthias
Nucleolar proteome dynamics.
Nature 2005;433(7021):77-83.
2005: Pendle Alison F; Clark Gillian P; Boon Reinier; Lewandowska Dominika; Lam Yun Wah; Andersen Jens; Mann Matthias; Lamond Angus I; Brown John W S; Shaw Peter J
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.
Molecular biology of the cell 2005;16(1):260-9.
2005: Schulze Waltraud X; Gleixner Gerd; Kaiser Klaus; Guggenberger Georg; Mann Matthias; Schulze Ernst-Detlef
A proteomic fingerprint of dissolved organic carbon and of soil particles.
Oecologia 2005;142(3):335-43.
2005: Schulze Waltraud X; Deng Lei; Mann Matthias
Phosphotyrosine interactome of the ErbB-receptor kinase family.
Molecular systems biology 2005;1():2005.0008.
2004: Ong Shao-En; Mittler Gerhard; Mann Matthias
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.
Nature methods 2004;1(2):119-26.
2004: Hinsby Anders M; Olsen Jesper V; Mann Matthias
Tyrosine phosphoproteomics of fibroblast growth factor signaling: a role for insulin receptor substrate-4.
The Journal of biological chemistry 2004;279(45):46438-47.
2004: Olsen Jesper V; Mann Matthias
Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(37):13417-22.
2004: Blagoev Blagoy; Ong Shao-En; Kratchmarova Irina; Mann Matthias
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics.
Nature biotechnology 2004;22(9):1139-45.
2004: Kristiansen Troels Zakarias; Nielsen Mogens Møller; Blagoev Blagoy; Pandey Akhilesh; Mann Matthias
Mouse embryonic fibroblasts derived from Odin deficient mice display a hyperproliiferative phenotype.
DNA research : an international journal for rapid publication of reports on genes and genomes 2004;11(4):285-92.
2004: Vertegaal Alfred C O; Ogg Stephen C; Jaffray Ellis; Rodriguez Manuel S; Hay Ronald T; Andersen Jens S; Mann Matthias; Lamond Angus I
A proteomic study of SUMO-2 target proteins.
The Journal of biological chemistry 2004;279(32):33791-8.
2004: Olsen Jesper V; Ong Shao-En; Mann Matthias
Trypsin cleaves exclusively C-terminal to arginine and lysine residues.
Molecular & cellular proteomics : MCP 2004;3(6):608-14.
2004: de Hoog Carmen L; Foster Leonard J; Mann Matthias
RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers.
Cell 2004;117(5):649-62.
2004: Schulze Waltraud X; Mann Matthias
A novel proteomic screen for peptide-protein interactions.
The Journal of biological chemistry 2004;279(11):10756-64.
2004: Chan Chia C; Dostie Josee; Diem Michael D; Feng Wenqin; Mann Matthias; Rappsilber Juri; Dreyfuss Gideon
eIF4A3 is a novel component of the exon junction complex.
RNA (New York, N.Y.) 2004;10(2):200-9.
2004: Ibarrola Nieves; Kratchmarova Irina; Nakajima Daisuke; Schiemann William P; Moustakas Aristidis; Pandey Akhilesh; Mann Matthias
Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling.
BMC cell biology 2004;5():2.
2004: Olsen Jesper V; Andersen Jens R; Nielsen Peter Aa; Nielsen Michael L; Figeys Daniel; Mann Matthias; Wisniewski Jacek R
HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain.
Molecular & cellular proteomics : MCP 2004;3(1):82-92.
2004: de Hoog Carmen L; Mann Matthias
Proteomics.
Annual review of genomics and human genetics 2004;5():267-93.
2003: Andersen Jens S; Wilkinson Christopher J; Mayor Thibault; Mortensen Peter; Nigg Erich A; Mann Matthias
Proteomic characterization of the human centrosome by protein correlation profiling.
Nature 2003;426(6966):570-4.
2003: Leung Anthony K L; Andersen Jens S; Mann Matthias; Lamond Angus I
Bioinformatic analysis of the nucleolus.
The Biochemical journal 2003;376(Pt 3):553-69.
2003: Mootha Vamsi K; Bunkenborg Jakob; Olsen Jesper V; Hjerrild Majbrit; Wisniewski Jacek R; Stahl Erich; Bolouri Marjan S; Ray Heta N; Sihag Smita; Kamal Michael; Patterson Nick; Lander Eric S; Mann Matthias
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.
Cell 2003;115(5):629-40.
2003: Rappsilber Juri; Friesen Westley J; Paushkin Sergey; Dreyfuss Gideon; Mann Matthias
Detection of arginine dimethylated peptides by parallel precursor ion scanning mass spectrometry in positive ion mode.
Analytical chemistry 2003;75(13):3107-14.
2003: Foster Leonard J; De Hoog Carmen L; Mann Matthias
Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(10):5813-8.
2003: Ong Shao-En; Kratchmarova Irina; Mann Matthias
Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC).
Journal of proteome research 2003;2(2):173-81.
2003: Steen Hanno; Fernandez Minerva; Ghaffari Saghi; Pandey Akhilesh; Mann Matthias
Phosphotyrosine mapping in Bcr/Abl oncoprotein using phosphotyrosine-specific immonium ion scanning.
Molecular & cellular proteomics : MCP 2003;2(3):138-45.
2003: Mann Matthias; Jensen Ole N
Proteomic analysis of post-translational modifications.
Nature biotechnology 2003;21(3):255-61.
2003: Blagoev Blagoy; Kratchmarova Irina; Ong Shao-En; Nielsen Mogens; Foster Leonard J; Mann Matthias
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling.
Nature biotechnology 2003;21(3):315-8.
2003: Ong Shao-En; Foster Leonard J; Mann Matthias
Mass spectrometric-based approaches in quantitative proteomics.
Methods (San Diego, Calif.) 2003;29(2):124-30.
2003: Rappsilber Juri; Ishihama Yasushi; Mann Matthias
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics.
Analytical chemistry 2003;75(3):663-70.
2003: Hinsby Anders M; Olsen Jesper V; Bennett Keiryn L; Mann Matthias
Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry.
Molecular & cellular proteomics : MCP 2003;2(1):29-36.
2003: Pandey Akhilesh; Peri Suraj; Thacker Colin; Whipple Chery A; Collins John J; Mann Matthias
Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome.
Bioinformatics (Oxford, England) 2003;19(2):169-72.
2003: Mootha Vamsi K; Lepage Pierre; Miller Kathleen; Bunkenborg Jakob; Reich Michael; Hjerrild Majbrit; Delmonte Terrye; Villeneuve Amelie; Sladek Robert; Xu Fenghao; Mitchell Grant A; Morin Charles; Mann Matthias; Hudson Thomas J; Robinson Brian; Rioux John D; Lander Eric S
Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(2):605-10.
2002: Steen Hanno; Mann Matthias
Analysis of bromotryptophan and hydroxyproline modifications by high-resolution, high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tags.
Analytical chemistry 2002;74(24):6230-6.
2002: Ishihama Yasushi; Rappsilber Juri; Andersen Jens S; Mann Matthias
Microcolumns with self-assembled particle frits for proteomics.
Journal of chromatography. A 2002;979(1-2):233-9.
2002: Pandey Akhilesh; Blagoev Blagoy; Kratchmarova Irina; Fernandez Minerva; Nielsen Mogens; Kristiansen Troels Zakarias; Ohara Osamu; Podtelejnikov Alexandre V; Roche Serge; Lodish Harvey F; Mann Matthias
Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases.
Oncogene 2002;21(52):8029-36.
2002: Blagoev Blagoy; Kratchmarova Irina; Nielsen Mogens M; Fernandez Minerva M; Voldby Jesper; Andersen Jens S; Kristiansen Karsten; Pandey Akhilesh; Mann Matthias
Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature.
The Journal of biological chemistry 2002;277(44):42011-6.
2002: Lasonder Edwin; Ishihama Yasushi; Andersen Jens S; Vermunt Adriaan M W; Pain Arnab; Sauerwein Robert W; Eling Wijnand M C; Hall Neil; Waters Andrew P; Stunnenberg Hendrik G; Mann Matthias
Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry.
Nature 2002;419(6906):537-42.
2002: Steen Hanno; Mann Matthias
A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode.
Journal of the American Society for Mass Spectrometry 2002;13(8):996-1003.
2002: Rappsilber Juri; Ryder Ursula; Lamond Angus I; Mann Matthias
Large-scale proteomic analysis of the human spliceosome.
Genome research 2002;12(8):1231-45.
2002: Baccon Jennifer; Pellizzoni Livio; Rappsilber Juri; Mann Matthias; Dreyfuss Gideon
Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex.
The Journal of biological chemistry 2002;277(35):31957-62.
2002: Grønborg Mads; Kristiansen Troels Zakarias; Stensballe Allan; Andersen Jens S; Ohara Osamu; Mann Matthias; Jensen Ole Nørregaard; Pandey Akhilesh
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate.
Molecular & cellular proteomics : MCP 2002;1(7):517-27.
2002: Rappsilber Juri; Mann Matthias
Is mass spectrometry ready for proteome-wide protein expression analysis?
Genome biology 2002;3(8):COMMENT2008.
2002: Mann Matthias; Ong Shao En; Grønborg Mads; Steen Hanno; Jensen Ole N; Pandey Akhilesh
Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome.
Trends in biotechnology 2002;20(6):261-8.
2002: Ong Shao-En; Blagoev Blagoy; Kratchmarova Irina; Kristensen Dan Bach; Steen Hanno; Pandey Akhilesh; Mann Matthias
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Molecular & cellular proteomics : MCP 2002;1(5):376-86.
2002: Pandey Akhilesh; Dan Ippeita; Kristiansen Troels Z; Watanabe Norinobu M; Voldby Jesper; Kajikawa Eriko; Khosravi-Far Roya; Blagoev Blagoy; Mann Matthias
Cloning and characterization of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain.
Oncogene 2002;21(24):3939-48.
2002: Pandey Akhilesh; Ibarrola Nieves; Kratchmarova Irina; Fernandez Minerva M; Constantinescu Stefan N; Ohara Osamu; Sawasdikosol Sansana; Lodish Harvey F; Mann Matthias
A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling.
The Journal of biological chemistry 2002;277(21):19131-8.
2002: Kratchmarova Irina; Kalume Dario E; Blagoev Blagoy; Scherer Philipp E; Podtelejnikov Alexandre V; Molina Henrik; Bickel Perry E; Andersen Jens S; Fernandez Minerva M; Bunkenborg Jacob; Roepstorff Peter; Kristiansen Karsten; Lodish Harvey F; Mann Matthias; Pandey Akhilesh
A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes.
Molecular & cellular proteomics : MCP 2002;1(3):213-22.
2002: Mourelatos Zissimos; Dostie Josée; Paushkin Sergey; Sharma Anup; Charroux Bernard; Abel Linda; Rappsilber Juri; Mann Matthias; Dreyfuss Gideon
miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.
Genes & development 2002;16(6):720-8.
2002: Friesen Westley J; Wyce Anastasia; Paushkin Sergey; Abel Linda; Rappsilber Juri; Mann Matthias; Dreyfuss Gideon
A novel WD repeat protein component of the methylosome binds Sm proteins.
The Journal of biological chemistry 2002;277(10):8243-7.
2002: Pellizzoni Livio; Baccon Jennifer; Rappsilber Juri; Mann Matthias; Dreyfuss Gideon
Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component.
The Journal of biological chemistry 2002;277(9):7540-5.
2002: Rappsilber Juri; Mann Matthias
What does it mean to identify a protein in proteomics?
Trends in biochemical sciences 2002;27(2):74-8.
2002: Dan Ippeita; Ong Shao-En; Watanabe Norinobu M; Blagoev Blagoy; Nielsen Mogens M; Kajikawa Eriko; Kristiansen Troels Z; Mann Matthias; Pandey Akhilesh
Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties.
The Journal of biological chemistry 2002;277(8):5929-39.
2002: Gubitz Amelie K; Mourelatos Zissimos; Abel Linda; Rappsilber Juri; Mann Matthias; Dreyfuss Gideon
Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins.
The Journal of biological chemistry 2002;277(7):5631-6.
2002: Nielsen Michael L; Bennett Keiryn L; Larsen Brett; Moniatte Marc; Mann Matthias
Peptide end sequencing by orthogonal MALDI tandem mass spectrometry.
Journal of proteome research 2002;1(1):63-71.
2002: Fox Archa H; Lam Yun Wah; Leung Anthony K L; Lyon Carol E; Andersen Jens; Mann Matthias; Lamond Angus I
Paraspeckles: a novel nuclear domain.
Current biology : CB 2002;12(1):13-25.
2002: Andersen Jens S; Lyon Carol E; Fox Archa H; Leung Anthony K L; Lam Yun Wah; Steen Hanno; Mann Matthias; Lamond Angus I
Directed proteomic analysis of the human nucleolus.
Current biology : CB 2002;12(1):1-11.
2002: Steen Hanno; Kuster Bernhard; Fernandez Minerva; Pandey Akhilesh; Mann Matthias
Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway.
The Journal of biological chemistry 2002;277(2):1031-9.
2001: Friesen W J; Paushkin S; Wyce A; Massenet S; Pesiridis G S; Van Duyne G; Rappsilber J; Mann M; Dreyfuss G
The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins.
Molecular and cellular biology 2001;21(24):8289-300.
2001: Peri S; Ibarrola N; Blagoev B; Mann M; Pandey A
Common pitfalls in bioinformatics-based analyses: look before you leap.
Trends in genetics : TIG 2001;17(9):541-5.
2001: Rappsilber J; Ajuh P; Lamond A I; Mann M
SPF30 is an essential human splicing factor required for assembly of the U4/U5/U6 tri-small nuclear ribonucleoprotein into the spliceosome.
The Journal of biological chemistry 2001;276(33):31142-50.
2001: Steen H; Küster B; Mann M
Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning.
Journal of mass spectrometry : JMS 2001;36(7):782-90.
2001: Küster B; Mortensen P; Andersen J S; Mann M
Mass spectrometry allows direct identification of proteins in large genomes.
Proteomics 2001;1(5):641-50.
2001: Milkereit P; Gadal O; Podtelejnikov A; Trumtel S; Gas N; Petfalski E; Tollervey D; Mann M; Hurt E; Tschochner H
Maturation and intranuclear transport of pre-ribosomes requires Noc proteins.
Cell 2001;105(4):499-509.
2001: Steen H; Küster B; Fernandez M; Pandey A; Mann M
Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode.
Analytical chemistry 2001;73(7):1440-8.
2001: Steen H; Mann M
Similarity between condensed phase and gas phase chemistry: fragmentation of peptides containing oxidized cysteine residues and its implications for proteomics.
Journal of the American Society for Mass Spectrometry 2001;12(2):228-32.
2001: Mann M; Pandey A
Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases.
Trends in biochemical sciences 2001;26(1):54-61.
2001: Pellizzoni L; Charroux B; Rappsilber J; Mann M; Dreyfuss G
A functional interaction between the survival motor neuron complex and RNA polymerase II.
The Journal of cell biology 2001;152(1):75-85.
2001: Mann M; Hendrickson R C; Pandey A
Analysis of proteins and proteomes by mass spectrometry.
Annual review of biochemistry 2001;70():437-73.
2000: Ajuh P; Kuster B; Panov K; Zomerdijk J C; Mann M; Lamond A I
Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry.
The EMBO journal 2000;19(23):6569-81.
2000: Pandey A; Fernandez M M; Steen H; Blagoev B; Nielsen M M; Roche S; Mann M; Lodish H F
Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways.
The Journal of biological chemistry 2000;275(49):38633-9.
2000: Andersen J S; Mann M
Functional genomics by mass spectrometry.
FEBS letters 2000;480(1):25-31.
2000: Bailer S M; Balduf C; Katahira J; Podtelejnikov A; Rollenhagen C; Mann M; Pante N; Hurt E
Nup116p associates with the Nup82p-Nsp1p-Nup159p nucleoporin complex.
The Journal of biological chemistry 2000;275(31):23540-8.
2000: Pandey A; Mann M
Proteomics to study genes and genomes.
Nature 2000;405(6788):837-46.
2000: Kuster B; Shainskaya A; Pu H X; Goldshleger R; Blostein R; Mann M; Karlish S J
A new variant of the gamma subunit of renal Na,K-ATPase. Identification by mass spectrometry, antibody binding, and expression in cultured cells.
The Journal of biological chemistry 2000;275(24):18441-6.
2000: Fath S; Milkereit P; Podtelejnikov A V; Bischler N; Schultz P; Bier M; Mann M; Tschochner H
Association of yeast RNA polymerase I with a nucleolar substructure active in rRNA synthesis and processing.
The Journal of cell biology 2000;149(3):575-90.
2000: Charroux B; Pellizzoni L; Perkinson R A; Yong J; Shevchenko A; Mann M; Dreyfuss G
Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli.
The Journal of cell biology 2000;148(6):1177-86.
2000: Rappsilber J; Siniossoglou S; Hurt E C; Mann M
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry.
Analytical chemistry 2000;72(2):267-75.
2000: Pandey A; Podtelejnikov A V; Blagoev B; Bustelo X R; Mann M; Lodish H F
Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(1):179-84.
2000: Lau D; Künzler M; Braunwarth A; Hellmuth K; Podtelejnikov A; Mann M; Hurt E
Purification of protein A-tagged yeast ran reveals association with a novel karyopherin beta family member, Pdr6p.
The Journal of biological chemistry 2000;275(1):467-71.
2000: Kosova B; Panté N; Rollenhagen C; Podtelejnikov A; Mann M; Aebi U; Hurt E
Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p.
The Journal of biological chemistry 2000;275(1):343-50.
2000: Shevchenko A; Chernushevich I; Wilm M; Mann M
De Novo peptide sequencing by nanoelectrospray tandem mass spectrometry using triple quadrupole and quadrupole/time-of-flight instruments.
Methods in molecular biology (Clifton, N.J.) 2000;146():1-16.
1999: Charroux B; Pellizzoni L; Perkinson R A; Shevchenko A; Mann M; Dreyfuss G
Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems.
The Journal of cell biology 1999;147(6):1181-94.
1999: Rigaut G; Shevchenko A; Rutz B; Wilm M; Mann M; Séraphin B
A generic protein purification method for protein complex characterization and proteome exploration.
Nature biotechnology 1999;17(10):1030-2.
1999: Gottschalk A; Neubauer G; Banroques J; Mann M; Lührmann R; Fabrizio P
Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.
The EMBO journal 1999;18(16):4535-48.
1999: Katahira J; Strässer K; Podtelejnikov A; Mann M; Jung J U; Hurt E
The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human.
The EMBO journal 1999;18(9):2593-609.
1999: Küster B; Mann M
18O-labeling of N-glycosylation sites to improve the identification of gel-separated glycoproteins using peptide mass mapping and database searching.
Analytical chemistry 1999;71(7):1431-40.
1999: Neubauer G; Mann M
Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations.
Analytical chemistry 1999;71(1):235-42.
1999: Jensen O N; Wilm M; Shevchenko A; Mann M
Peptide sequencing of 2-DE gel-isolated proteins by nanoelectrospray tandem mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 1999;112():571-88.
1999: Jensen O N; Wilm M; Shevchenko A; Mann M
Sample preparation methods for mass spectrometric peptide mapping directly from 2-DE gels.
Methods in molecular biology (Clifton, N.J.) 1999;112():513-30.
1998: Watkins N J; Gottschalk A; Neubauer G; Kastner B; Fabrizio P; Mann M; Lührmann R
Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.
RNA (New York, N.Y.) 1998;4(12):1549-68.
1998: Siniossoglou S; Santos-Rosa H; Rappsilber J; Mann M; Hurt E
A novel complex of membrane proteins required for formation of a spherical nucleus.
The EMBO journal 1998;17(22):6449-64.
1998: Neubauer G; King A; Rappsilber J; Calvio C; Watson M; Ajuh P; Sleeman J; Lamond A; Mann M
Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex.
Nature genetics 1998;20(1):46-50.
1998: Gottschalk A; Tang J; Puig O; Salgado J; Neubauer G; Colot H V; Mann M; Séraphin B; Rosbash M; Lührmann R; Fabrizio P
A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.
RNA (New York, N.Y.) 1998;4(4):374-93.
1998: Bailer S M; Siniossoglou S; Podtelejnikov A; Hellwig A; Mann M; Hurt E
Nup116p and nup100p are interchangeable through a conserved motif which constitutes a docking site for the mRNA transport factor gle2p.
The EMBO journal 1998;17(4):1107-19.
1998: Liu H Y; Badarinarayana V; Audino D C; Rappsilber J; Mann M; Denis C L
The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively.
The EMBO journal 1998;17(4):1096-106.
1997: Jensen O N; Podtelejnikov A V; Mann M
Identification of the components of simple protein mixtures by high-accuracy peptide mass mapping and database searching.
Analytical chemistry 1997;69(23):4741-50.
1997: Mitchell P; Petfalski E; Shevchenko A; Mann M; Tollervey D
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.
Cell 1997;91(4):457-66.
1997: Grandi P; Dang T; Pané N; Shevchenko A; Mann M; Forbes D; Hurt E
Nup93, a vertebrate homologue of yeast Nic96p, forms a complex with a novel 205-kDa protein and is required for correct nuclear pore assembly.
Molecular biology of the cell 1997;8(10):2017-38.
1997: Horiuchi H; Lippé R; McBride H M; Rubino M; Woodman P; Stenmark H; Rybin V; Wilm M; Ashman K; Mann M; Zerial M
A novel Rab5 GDP/GTP exchange factor complexed to Rabaptin-5 links nucleotide exchange to effector recruitment and function.
Cell 1997;90(6):1149-59.
1997: McNagny K M; Pettersson I; Rossi F; Flamme I; Shevchenko A; Mann M; Graf T
Thrombomucin, a novel cell surface protein that defines thrombocytes and multipotent hematopoietic progenitors.
The Journal of cell biology 1997;138(6):1395-407.
1997: Teixeira M T; Siniossoglou S; Podtelejnikov S; Bénichou J C; Mann M; Dujon B; Hurt E; Fabre E
Two functionally distinct domains generated by in vivo cleavage of Nup145p: a novel biogenesis pathway for nucleoporins.
The EMBO journal 1997;16(16):5086-97.
1997: Varga-Weisz P D; Wilm M; Bonte E; Dumas K; Mann M; Becker P B
Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II.
Nature 1997;388(6642):598-602.
1997: Shevchenko A; Wilm M; Mann M
Peptide sequencing by mass spectrometry for homology searches and cloning of genes.
Journal of protein chemistry 1997;16(5):481-90.
1997: Houthaeve T; Gausepohl H; Ashman K; Nillson T; Mann M
Automated protein preparation techniques using a digest robot.
Journal of protein chemistry 1997;16(5):343-8.
1997: Ostareck D H; Ostareck-Lederer A; Wilm M; Thiele B J; Mann M; Hentze M W
mRNA silencing in erythroid differentiation: hnRNP K and hnRNP E1 regulate 15-lipoxygenase translation from the 3' end.
Cell 1997;89(4):597-606.
1997: Jensen O N; Mortensen P; Vorm O; Mann M
Automation of matrix-assisted laser desorption/ionization mass spectrometry using fuzzy logic feedback control.
Analytical chemistry 1997;69(9):1706-14.
1997: Lingner J; Hughes T R; Shevchenko A; Mann M; Lundblad V; Cech T R
Reverse transcriptase motifs in the catalytic subunit of telomerase.
Science (New York, N.Y.) 1997;276(5312):561-7.
1997: Neubauer G; Gottschalk A; Fabrizio P; Séraphin B; Lührmann R; Mann M
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(2):385-90.
1997: Shevchenko A; Chernushevich I; Ens W; Standing K G; Thomson B; Wilm M; Mann M
Rapid 'de novo' peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer.
Rapid communications in mass spectrometry : RCM 1997;11(9):1015-24.
1996: Shevchenko A; Jensen O N; Podtelejnikov A V; Sagliocco F; Wilm M; Vorm O; Mortensen P; Shevchenko A; Boucherie H; Mann M
Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(25):14440-5.
1996: Jensen O N; Houthaeve T; Shevchenko A; Cudmore S; Ashford T; Mann M; Griffiths G; Krijnse Locker J
Identification of the major membrane and core proteins of vaccinia virus by two-dimensional electrophoresis.
Journal of virology 1996;70(11):7485-97.
1996: Simos G; Segref A; Fasiolo F; Hellmuth K; Shevchenko A; Mann M; Hurt E C
The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases.
The EMBO journal 1996;15(19):5437-48.
1996: Weijland A; Neubauer G; Courtneidge S A; Mann M; Wierenga R K; Superti-Furga G
The purification and characterization of the catalytic domain of Src expressed in Schizosaccharomyces pombe. Comparison of unphosphorylated and tyrosine phosphorylated species.
European journal of biochemistry / FEBS 1996;240(3):756-64.
1996: Shevchenko A; Wilm M; Vorm O; Jensen O N; Podtelejnikov A V; Neubauer G; Shevchenko A; Mortensen P; Mann M
A strategy for identifying gel-separated proteins in sequence databases by MS alone.
Biochemical Society transactions 1996;24(3):893-6.
1996: Mørtz E; O'Connor P B; Roepstorff P; Kelleher N L; Wood T D; McLafferty F W; Mann M
Sequence tag identification of intact proteins by matching tanden mass spectral data against sequence data bases.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(16):8264-7.
1996: Jensen O N; Vorm O; Mann M
Sequence patterns produced by incomplete enzymatic digestion or one-step Edman degradation of peptide mixtures as probes for protein database searches.
Electrophoresis 1996;17(5):938-44.
1996: Shevchenko A; Wilm M; Vorm O; Mann M
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.
Analytical chemistry 1996;68(5):850-8.
1996: Wilm M; Neubauer G; Mann M
Parent ion scans of unseparated peptide mixtures.
Analytical chemistry 1996;68(3):527-33.
1996: Wilm M; Shevchenko A; Houthaeve T; Breit S; Schweigerer L; Fotsis T; Mann M
Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry.
Nature 1996;379(6564):466-9.
1996: Wilm M; Mann M
Analytical properties of the nanoelectrospray ion source.
Analytical chemistry 1996;68(1):1-8.
1996: Jensen O N; Podtelejnikov A; Mann M
Delayed extraction improves specificity in database searches by matrix-assisted laser desorption/ionization peptide maps.
Rapid communications in mass spectrometry : RCM 1996;10(11):1371-8.
1996: Talbo G; Mann M
Aspects of the sequencing of carbohydrates and oligonucleotides by matrix-assisted laser desorption/ionization post-source decay.
Rapid communications in mass spectrometry : RCM 1996;10(1):100-3.
1995: Houthaeve T; Gausepohl H; Mann M; Ashman K
Automation of micro-preparation and enzymatic cleavage of gel electrophoretically separated proteins.
FEBS letters 1995;376(1-2):91-4.
1995: Calvio C; Neubauer G; Mann M; Lamond A I
Identification of hnRNP P2 as TLS/FUS using electrospray mass spectrometry.
RNA (New York, N.Y.) 1995;1(7):724-33.
1994: Mann M; Wilm M
Error-tolerant identification of peptides in sequence databases by peptide sequence tags.
Analytical chemistry 1994;66(24):4390-9.
1994: Mørtz E; Vorm O; Mann M; Roepstorff P
Identification of proteins in polyacrylamide gels by mass spectrometric peptide mapping combined with database search.
Biological mass spectrometry 1994;23(5):249-61.
1993: Morand K; Talbo G; Mann M
Oxidation of peptides during electrospray ionization.
Rapid communications in mass spectrometry : RCM 1993;7(8):738-43.
1993: Mann M; Højrup P; Roepstorff P
Use of mass spectrometric molecular weight information to identify proteins in sequence databases.
Biological mass spectrometry 1993;22(6):338-45.

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