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Elaine Mardis

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Rehan Akbani; Christopher C Benz; Andrew D Cherniack; Li Ding; Cyriac Kandoth; Raju Kucherlapati; Peter W Laird; Yuexin Liu; Elaine R Mardis; Gordon B Mills; Itai Pashtan; A Gordon Robertson; Nikolaus Schultz; Hui Shen; Ronglai Shen; Christina Yau; Wei Zhang; Douglas A Levine
Integrated genomic characterization of endometrial carcinoma.
David H Gutmann; Ibrahim Hussain; Cyriac Kandoth; Jeffrey R Leonard; vincent magrini; Ryan Demeter; Li Ding; Lucinda L Fulton; Robert S Fulton; Abhijit Guha; Michael D McLellan; Christopher A Miller; John W Wallis; Todd Wylie; Elaine R Mardis
Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma.
Jeffery M Klco; Tamara L Lamprecht; Petra Erdmann-Gilmore; Jasreet Hundal; Cheryl F Lichti; vincent magrini; Elaine R Mardis; Matthew R Meyer; Shawn M Sarkaria; David H Spencer; R Reid Townsend; Nobish Varghese; Jason Walker; Richard K Wilson; Todd Wylie; Timothy J Ley
Genomic impact of transient low-dose decitabine treatment on primary AML cells.

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2013: Rehan Akbani; Christopher C Benz; Andrew D Cherniack; Li Ding; Cyriac Kandoth; Raju Kucherlapati; Peter W Laird; Yuexin Liu; Elaine R Mardis; Gordon B Mills; Itai Pashtan; A Gordon Robertson; Nikolaus Schultz; Hui Shen; Ronglai Shen; Christina Yau; Wei Zhang; Douglas A Levine
Integrated genomic characterization of endometrial carcinoma.
Nature 2013;497(7447):67-73.
2013: David H Gutmann; Ibrahim Hussain; Cyriac Kandoth; Jeffrey R Leonard; vincent magrini; Ryan Demeter; Li Ding; Lucinda L Fulton; Robert S Fulton; Abhijit Guha; Michael D McLellan; Christopher A Miller; John W Wallis; Todd Wylie; Elaine R Mardis
Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma.
Genome research 2013;23(3):431-9.
2013: Jeffery M Klco; Tamara L Lamprecht; Petra Erdmann-Gilmore; Jasreet Hundal; Cheryl F Lichti; vincent magrini; Elaine R Mardis; Matthew R Meyer; Shawn M Sarkaria; David H Spencer; R Reid Townsend; Nobish Varghese; Jason Walker; Richard K Wilson; Todd Wylie; Timothy J Ley
Genomic impact of transient low-dose decitabine treatment on primary AML cells.
Blood 2013;121(9):1633-43.
2013: Ron Bose; Li Ding; Adam B Aronson; Nicholas Goel; Shyam M Kavuri; Daniel C Koboldt; Shunqiang Li; Cynthia X Ma; Elaine R Mardis; John Monsey; Adam C Searleman; Dong Shen; Wei Shen; Matthew J Ellis
Activating HER2 mutations in HER2 gene amplification negative breast cancer.
Cancer discovery 2013;3(2):224-37.
2013: Estienne C Swart; Jessica L Wiggins; Richard K Wilson; Yi Zhou; Michael S Bowen; John R Bracht; Wei-Jen Chang; Xiao Chen; Thomas G Doak; Sean R Eddy; Robert S Fulton; Aaron D Goldman; Kevin Haub; Glenn A Herrick; Thomas A Jones; Seolkyoung Jung; Jaspreet S Khurana; Amy Ly; vincent magrini; Elaine R Mardis; John Matese; Sean McGrath; Patrick J Minx; Mariusz Nowacki; Lance Parsons; Klaas Schotanus; Donna Storton; Nicholas A Stover; Laura F Landweber
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.
PLoS biology 2013;11(1):e1001473.
2012: Ramaswamy Govindan; Malachi Griffith; Krishna L Kanchi; Christopher A Maher; Elaine R Mardis; Sandra McDonald; David Ornitz; Janakiraman Subramanian; Jason Walker; John Wallis; Mark Watson; Ron Bose; Ken Chen; Nathan D Dees; Li Ding; David J Dooling; Lucinda Fulton; Robert Fulton; Donghai Xiong; Ming You; Richard K Wilson
Genomic landscape of non-small cell lung cancer in smokers and never-smokers.
Cell 2012;150(6):1121-34.
2012: Nathan D Dees; Matthew B Callaway; David Dooling; Cyriac Kandoth; Daniel C Koboldt; Elaine R Mardis; Thomas B Mooney; William Schierding; Michael Wendl; Richard K Wilson; Qunyuan Zhang; Li Ding
MuSiC: identifying mutational significance in cancer genomes.
Genome research 2012;22(8):1589-98.
2012: Elaine R Mardis
Applying next-generation sequencing to pancreatic cancer treatment.
Nature reviews. Gastroenterology & hepatology 2012;9(8):477-86.
2012: Ken Chen; Steven J Jones; Joelle M Kalicki-Veizer; Cyriac Kandoth; Timothy J Ley; Elaine R Mardis; Marco A Marra; Andrew J Mungall; Karen L Mungall; John W Wallis; John N Weinstein; Richard K Wilson; Li Ding
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
Bioinformatics (Oxford, England) 2012;28(14):1923-4.
2012: Sandra A McDonald; David Ota; John D Pfeifer; Mark A Watson; Elaine R Mardis; Jonathan M Green
Comprehensive genomic studies: emerging regulatory, strategic, and quality assurance challenges for biorepositories.
American journal of clinical pathology 2012;138(1):31-41.
2012: James R Downing; Li Ding; Timothy J Ley; Elaine R Mardis; Ching-Hon Pui; Richard K Wilson; Jinghui Zhang; William E Evans
The Pediatric Cancer Genome Project.
Nature genetics 2012;44(6):619-22.
2012: Elaine R Mardis
Genome sequencing and cancer.
Current opinion in genetics & development 2012;22(3):245-50.
2012: Margaret A Young; Ken Chen; Lisa L Cook; Ryan T Demeter; Li Ding; Xian Fan; Daniel R George; Joelle Kalicki-Veizer; David E Larson; Ling Lin; Elaine R Mardis; Christopher Miller; Kevin M Pawlik; Mark S Sands; Heather Schmidt; Chiao-Wang Sun; Gary W Swift; Tim M Townes; Michael C Wendl; Richard K Wilson; Timothy J Ley
Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells.
Cell stem cell 2012;10(5):570-82.
2012: Matthew J Walter; Peter Westervelt; Richard K Wilson; Sarah Witowski; Rachel Abbott; Ken Chen; Li Ding; John F DiPersio; David Dooling; William Eades; Xian Fan; John L Frater; Robert Fulton; Marcus Grillot; Sharon Heath; Joelle Kalicki-Veizer; Daniel C Koboldt; David E Larson; Timothy J Ley; Daniel C Link; vincent magrini; Elaine R Mardis; Michael D McLellan; Michelle O'Laughlin; Heather Schmidt; Jin Shao; Dong Shen; Michael H Tomasson; Timothy A Graubert
Clonal architecture of secondary acute myeloid leukemia.
The New England journal of medicine 2012;366(12):1090-8.
2012: Nai-Kong V Cheung; James Dalton; Li Ding; James R Downing; Michael A Dyer; David Ellison; Sara Federico; Robert Fulton; Adriana Heguy; Charles Lu; Elaine R Mardis; Alberto S Pappo; Matthew Parker; Satish K Tickoo; Jianmin Wang; Richard K Wilson; Jianrong Wu; Jinghui Zhang; Armita Bahrami; Jared Becksfort; Catherine A Billups; Xiang Chen; Irene Y Cheung
Association of age at diagnosis and genetic mutations in patients with neuroblastoma.
JAMA : the journal of the American Medical Association 2012;307(10):1062-71.
2012: Daniel C Koboldt; David E Larson; Ling Lin; Elaine R Mardis; Michael D McLellan; Christopher Miller; Dong Shen; Li Ding; Qunyuan Zhang; Richard K Wilson
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
Genome research 2012;22(3):568-76.
2012: Gang Wu; Junyuan Zhang; Jinghui Zhang; Suzanne J Baker; Jared Becksfort; Alberto Broniscer; Li Ding; James R Downing; Michael A Dyer; David W Ellison; Amar Gajjar; Richard J Gilbertson; Robert Huether; Charles Lu; Elaine R Mardis; Troy A McEachron; Charles G Mullighan; Matthew Parker; Barbara S Paugh; Chunxu Qu; Richard K Wilson
Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.
Nature genetics 2012;44(3):251-3.
2012: Hirokazu Matsushita; Lloyd J Old; Charles G Rickert; Lauren K Shea; Mark J Smyth; Ravindra Uppaluri; Matthew D Vesely; Michael Wendl; J Michael White; Todd Wylie; James P Allison; Cora D Arthur; Yee-Shiuan Chen; Ryan Demeter; Jasreet Hundal; Daniel C Koboldt; vincent magrini; Elaine R Mardis; Robert D Schreiber
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting.
Nature 2012;482(7385):400-4.
2012: David E Larson; Timothy J Ley; Elaine R Mardis; Richard K Wilson; Travis E Abbott; Ken Chen; David J Dooling; Christopher C Harris; Daniel C Koboldt; Li Ding
SomaticSniper: identification of somatic point mutations in whole genome sequencing data.
Bioinformatics (Oxford, England) 2012;28(3):311-7.
2012: Estienne C Swart; Thomas G Doak; Brian P Higgins; Vincent J Magrini; Elaine R Mardis; Patrick J Minx; Mariusz Nowacki; Klaas Schotanus; Justine Shum; Heather Stiles; Laura F Landweber
The Oxytricha trifallax mitochondrial genome.
Genome biology and evolution 2012;4(2):136-54.
2011: Seolkyoung Jung; Laura F Landweber; vincent magrini; Elaine R Mardis; Patrick J Minx; Estienne C Swart; Sean R Eddy
Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.
Nucleic acids research 2011;39(17):7529-47.
2011: Jianmin Wang; Lei Wei; Richard K Wilson; David Zhao; Ken Chen; Li Ding; James R Downing; John Easton; Xian Fan; Christopher C Harris; Sue L Heatley; Linda Holmfeldt; Jing Ma; Elaine R Mardis; Charles G Mullighan; Clayton W Naeve; John C Obenauer; Debbie Payne-Turner; Stefan Roberts; Michael C Rusch; Jinghui Zhang
CREST maps somatic structural variation in cancer genomes with base-pair resolution.
Nature methods 2011;8(8):652-4.
2011: Matthew J Walter; Peter Westervelt; Richard K Wilson; J Baty; L Ding; John F DiPersio; Robert S Fulton; M Grillot; J Kalicki-Veizer; C Kandoth; Timothy J Ley; Elaine R Mardis; Michael D McLellan; M O'Laughlin; H Schmidt; J Shao; D Shen; Timothy A Graubert
Recurrent DNMT3A mutations in patients with myelodysplastic syndromes.
Leukemia 2011;25(7):1153-8.
2011: Michael Wendl; John W Wallis; Ling Lin; Cyriac Kandoth; Elaine R Mardis; Richard K Wilson; Li Ding
PathScan: a tool for discerning mutational significance in groups of putative cancer genes.
Bioinformatics (Oxford, England) 2011;27(12):1595-602.
2011: John S Welch; Peter Westervelt; Li Ding; David E Larson; Jeffery M Klco; Shashikant Kulkarni; John Wallis; Ken Chen; Jacqueline E Payton; Robert S Fulton; Joelle Veizer; Heather Schmidt; Tammi L Vickery; Sharon Heath; Mark A Watson; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Timothy J Ley; Richard K Wilson
Use of whole-genome sequencing to diagnose a cryptic fusion oncogene.
JAMA : the journal of the American Medical Association 2011;305(15):1577-84.
2011: Valliammai Muthappan; Aaron Y Lee; Tamara L Lamprecht; Lakshmi Akileswaran; Suzanne M Dintzis; Choli Lee; vincent magrini; Elaine R Mardis; Jay Shendure; Russell N Van Gelder
Biome representational in silico karyotyping.
Genome research 2011;21(4):626-33.
2011: John T Murphy; Janelle J Bruinsma; Daniel L Schneider; Sara Collier; James Guthrie; Asif Chinwalla; J David Robertson; Elaine R Mardis; Kerry Kornfeld
Histidine protects against zinc and nickel toxicity in Caenorhabditis elegans.
PLoS genetics 2011;7(3):e1002013.
2011: Elaine R Mardis
A decade's perspective on DNA sequencing technology.
Nature 2011;470(7333):198-203.
2011: Liang Ye; George M Weinstock; Richard K Wilson; Lei Chen; David J Dooling; Kevin V Haub; LaDeana W Hillier; Devin P Locke; Elaine R Mardis; John C Martin; Jason R Miller; Patrick J Minx; Makedonka Mitreva; Nay Thane; Wesley C Warren
A vertebrate case study of the quality of assemblies derived from next-generation sequences.
Genome biology 2011;12(3):R31.
2010: Giridharan Ramsingh; Daniel C Koboldt; Maria Trissal; Katherine B Chiappinelli; Todd Wylie; Sunita Koul; Li-Wei Chang; Rakesh Nagarajan; Todd A Fehniger; Paul Goodfellow; vincent magrini; Richard K Wilson; Li Ding; Timothy J Ley; Elaine R Mardis; Daniel C Link
Complete characterization of the microRNAome in a patient with acute myeloid leukemia.
Blood 2010;116(24):5316-26.
2010: Todd A Fehniger; Todd Wylie; Elizabeth Germino; Jeffrey W Leong; vincent magrini; Sunita Koul; Catherine R Keppel; Stephanie E Schneider; Daniel C Koboldt; Ryan P Sullivan; Michael E Heinz; Seth D Crosby; Rakesh Nagarajan; Giridharan Ramsingh; Daniel C Link; Timothy J Ley; Elaine R Mardis
Next-generation sequencing identifies the natural killer cell microRNA transcriptome.
Genome research 2010;20(11):1590-604.
2010: Daniel C Koboldt; Li Ding; Elaine R Mardis; Richard K Wilson
Challenges of sequencing human genomes.
Briefings in bioinformatics 2010;11(5):484-98.
2010: Qunyuan Zhang; Li Ding; David E Larson; Daniel C Koboldt; Michael D McLellan; Ken Chen; Xiaoqi Shi; Aldi Kraja; Elaine R Mardis; Richard K Wilson; Ingrid B Borecki; Michael A Province
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.
Bioinformatics (Oxford, England) 2010;26(4):464-9.
2010: Elaine R Mardis
The $1,000 genome, the $100,000 analysis?
Genome medicine 2010;2(11):84.
2010: Elaine R Mardis
Cancer genomics identifies determinants of tumor biology.
Genome biology 2010;11(5):211.
2009: Elaine R Mardis; Richard K Wilson
Cancer genome sequencing: a review.
Human molecular genetics 2009;18(R2):R163-8.
2009: Daniel C Koboldt; Ken Chen; Todd Wylie; David E Larson; Michael D McLellan; Elaine R Mardis; George M Weinstock; Richard K Wilson; Li Ding
VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
Bioinformatics (Oxford, England) 2009;25(17):2283-5.
2009: Rachel C Orscheln; David A Hunstad; Stephanie A Fritz; Jennifer A Loughman; Kimberly Mitchell; Emily K Storch; Monique Gaudreault; Patricia L Sellenriek; Jon R Armstrong; Elaine R Mardis; Gregory A Storch
contribution of genetically restricted, methicillin-susceptible strains to the ongoing epidemic of community-acquired Staphylococcus aureus infections.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2009;49(4):536-42.
2009: Matthew J Walter; Jacqueline E Payton; Rhonda E Ries; William D Shannon; Hrishikesh Deshmukh; Yu Zhao; Jack Baty; Sharon Heath; Peter Westervelt; Mark A Watson; Michael H Tomasson; Rakesh Nagarajan; Brian P O'Gara; Clara D Bloomfield; Krzysztof Mrózek; Rebecca R Selzer; Richmond Todd; Jacob Kitzman; Joel Geoghegan; Peggy S Eis; Rachel Maupin; Robert S Fulton; Michael D McLellan; Richard K Wilson; Elaine R Mardis; Daniel C Link; Timothy A Graubert; John F DiPersio; Timothy J Ley
Acquired copy number alterations in adult acute myeloid leukemia genomes.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(31):12950-5.
2009: Shana R Leopold; vincent magrini; Nicholas J Holt; Nurmohammad Shaikh; Elaine R Mardis; Joseph Cagno; Yoshitoshi Ogura; Atsushi Iguchi; Tetsuya Hayashi; Alexander Mellmann; Helge Karch; Thomas E Besser; Stanley A Sawyer; Thomas S Whittam; Phillip I Tarr
A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(21):8713-8.
2009: Tomas Marques-Bonet; Jeffrey M Kidd; ventura Mario; Tina Graves; Ze Cheng; LaDeana W Hillier; Zhaoshi Jiang; Carl Baker; Ray Malfavon-Borja; Lucinda A Fulton; Can Alkan; Gozde Aksay; Santhosh Girirajan; Priscillia Siswara; Lin Chen; Maria Francesca Cardone; Arcadi Navarro; Elaine R Mardis; Richard K Wilson; Evan E Eichler
A burst of segmental duplications in the genome of the African great ape ancestor.
Nature 2009;457(7231):877-81.
2009: Santhosh Girirajan; Lin Chen; Tina Graves; Tomas Marques-Bonet; ventura Mario; Catrina Fronick; Lucinda Fulton; Mariano Rocchi; Robert S Fulton; Richard K Wilson; Elaine R Mardis; Evan E Eichler
Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites.
Genome research 2009;19(2):178-90.
2008: Artyom A Alekseyenko; Shouyong Peng; Erica Larschan; Andrey A Gorchakov; Ok-Kyung Lee; Peter Kharchenko; Sean D McGrath; Charlotte I Wang; Elaine R Mardis; Peter J Park; Mitzi I Kuroda
A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.
Cell 2008;134(4):599-609.
2008: Elena V Dolgosheina; Ryan D Morin; Gozde Aksay; S Cenk Sahinalp; vincent magrini; Elaine R Mardis; Jim Mattsson; peter unrau
Conifers have a unique small RNA silencing signature.
RNA (New York, N.Y.) 2008;14(8):1508-15.
2008: Jenifer L Marks; Yixuan Gong; Dhananjay Chitale; Ben Golas; Michael D McLellan; Yumi Kasai; Li Ding; Elaine R Mardis; Richard K Wilson; David B Solit; Ross Levine; Kathrin Michel; Roman K Thomas; Valerie W Rusch; Marc Ladanyi; William Pao
Novel MEK1 mutation identified by mutational analysis of epidermal growth factor receptor signaling pathway genes in lung adenocarcinoma.
Cancer research 2008;68(14):5524-8.
2008: Zhifu Xiang; Zhifu Xiang; Richard Walgren; Yu Zhao; Yumi Kasai; Tracie Miner; Rhonda E Ries; Olga Lubman; daved fremont; Michael D McLellan; Jacqueline E Payton; Peter Westervelt; John F DiPersio; Daniel C Link; Matthew J Walter; Timothy A Graubert; Mark Watson; Jack Baty; Sharon Heath; William D Shannon; Rakesh Nagarajan; Clara D Bloomfield; Elaine R Mardis; Richard K Wilson; Timothy J Ley
Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia.
Blood 2008;111(9):4797-808.
2008: Zhifu Xiang; Yu Zhao; Vesselin Mitaksov; daved fremont; Yumi Kasai; AnnaLynn Molitoris; Rhonda E Ries; Tracie L Miner; Michael D McLellan; John F DiPersio; Daniel C Link; Jacqueline E Payton; Timothy A Graubert; Mark Watson; William Shannon; Sharon E Heath; Rakesh Nagarajan; Elaine R Mardis; Richard K Wilson; Timothy J Ley; Zhifu Xiang
Identification of somatic JAK1 mutations in patients with acute myeloid leukemia.
Blood 2008;111(9):4809-12.
2008: Ryan D Morin; Gozde Aksay; Elena Dolgosheina; H Alexander Ebhardt; vincent magrini; Elaine R Mardis; S Cenk Sahinalp; peter unrau
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.
Genome research 2008;18(4):571-84.
2008: Elaine R Mardis
The impact of next-generation sequencing technology on genetics.
Trends in genetics : TIG 2008;24(3):133-41.
2008: LaDeana W Hillier; Gabor T Marth; Aaron R Quinlan; David Dooling; Ginger Fewell; Derek Barnett; Paul Fox; Jarret I Glasscock; Matthew Hickenbotham; Weichun Huang; vincent magrini; Ryan J Richt; Sacha N Sander; Donald A Stewart; Michael Stromberg; Eric F Tsung; Todd Wylie; Tim Schedl; Richard K Wilson; Elaine R Mardis
Whole-genome sequencing and variant discovery in C. elegans.
Nature methods 2008;5(2):183-8.
2008: Xu Wang; Qi Sun; Sean D McGrath; Elaine R Mardis; Paul D Soloway; andrew clark
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain.
PloS one 2008;3(12):e3839.
2008: Elaine R Mardis
Next-generation DNA sequencing methods.
Annual review of genomics and human genetics 2008;9():387-402.
2008: Carl J Schmidt; Michael Romanov; Oliver Ryder; vincent magrini; Matthew Hickenbotham; Jarret Glasscock; Sean McGrath; Elaine R Mardis; Lincoln D Stein
Gallus GBrowse: a unified genomic database for the chicken.
Nucleic acids research 2008;36(Database issue):D719-23.
2007: William R Jeck; Josephine A Reinhardt; David A Baltrus; Matthew T Hickenbotham; vincent magrini; Elaine R Mardis; Jeffery L Dangl; Corbin D Jones
Extending assembly of short DNA sequences to handle error.
Bioinformatics (Oxford, England) 2007;23(21):2942-4.
2007: Daniel C Link; Ghada Kunter; Yumi Kasai; Yu Zhao; Tracie Miner; Michael D McLellan; Rhonda E Ries; Deepak Kapur; Rakesh Nagarajan; David C Dale; Audrey Anna Bolyard; Laurence A Boxer; Karl Welte; Cornelia Zeidler; jean donadieu; Christine Bellanné-Chantelot; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; John F DiPersio; Michael H Tomasson; Timothy A Graubert; Peter Westervelt; Mark Watson; William D Shannon; Jack Baty; Elaine R Mardis; Richard K Wilson; Timothy J Ley
Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia.
Blood 2007;110(5):1648-55.
2007: Matthew J Ellis; Michael Dixon; Mitch Dowsett; Rakesh Nagarajan; Elaine R Mardis
A luminal breast cancer genome atlas: progress and barriers.
The Journal of steroid biochemistry and molecular biology 2007;106(1-5):125-9.
2007: Elaine R Mardis
ChIP-seq: welcome to the new frontier.
Nature methods 2007;4(8):613-4.
2007: Aaron Hamvas; Daniel J Wegner; Christopher S Carlson; Kelly R Bergmann; Michelle A Trusgnich; Lucinda Fulton; Yumi Kasai; Ping An; Elaine R Mardis; Richard K Wilson; F Sessions Cole
Comprehensive genetic variant discovery in the surfactant protein B gene.
Pediatric research 2007;62(2):170-5.
2007: Arnon Elizur; Rachel C Orscheln; Thomas Ferkol; Jeffrey J Atkinson; W Michael Dunne; Richard S Buller; Jon R Armstrong; Elaine R Mardis; Gregory A Storch; Carolyn Louise Cannon
Panton-Valentine Leukocidin-positive methicillin-resistant Staphylococcus aureus lung infection in patients with cystic fibrosis.
Chest 2007;131(6):1718-25.
2007: Ken Chen; Michael D McLellan; Li Ding; Michael Wendl; Yumi Kasai; Richard K Wilson; Elaine R Mardis
PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.
Genome research 2007;17(5):659-66.
2007: Roberta Roberto; Oronzo Capozzi; Richard K Wilson; Elaine R Mardis; Mariana Lomiento; Eray Tuzun; Ze Cheng; Alan R Mootnick; Nicoletta Archidiacono; Mariano Rocchi; Evan E Eichler
Molecular refinement of gibbon genome rearrangements.
Genome research 2007;17(2):249-57.
2007: Matthew J Walter; Rhonda E Ries; Jon R Armstrong; John S Park; Elaine R Mardis; Timothy J Ley
Expression of a bcr-1 isoform of RARalpha-PML does not affect the penetrance of acute promyelocytic leukemia or the acquisition of an interstitial deletion on mouse chromosome 2.
Blood 2007;109(3):1237-40.
2007: Michael Wendl; Scott Smith; Craig S Pohl; David J Dooling; Asif T Chinwalla; Kevin Crouse; Todd Hepler; Shin Leong; Lynn Carmichael; Mike Nhan; Benjamin J Oberkfell; Elaine R Mardis; LaDeana W Hillier; Richard K Wilson
Design and implementation of a generalized laboratory data model.
BMC bioinformatics 2007;8():362.
2007: Jenifer L Marks; Michael D McLellan; Maureen F Zakowski; Alex E Lash; Yumi Kasai; Stephen Broderick; Inderpal S Sarkaria; Duykhanh Pham; Bhuvanesh Singh; Tracie L Miner; Ginger A Fewell; Lucinda L Fulton; Elaine R Mardis; Richard K Wilson; Mark G Kris; Valerie W Rusch; Harold Varmus; William Pao
Mutational analysis of EGFR and related signaling pathway genes in lung adenocarcinomas identifies a novel somatic kinase domain mutation in FGFR4.
PloS one 2007;2(5):e426.
2007: Amy L Kistler; Dale R Webster; Silvi Rouskin; vincent magrini; Joel J Credle; David P Schnurr; Homer A Boushey; Elaine R Mardis; Hao Li; Joe L DeRisi
Genome-wide diversity and selective pressure in the human rhinovirus.
Virology journal 2007;4():40.
2006: Peter J Turnbaugh; Ruth E Ley; Michael A Mahowald; vincent magrini; Elaine R Mardis; Jeffrey I Gordon
An obesity-associated gut microbiome with increased capacity for energy harvest.
Nature 2006;444(7122):1027-31.
2006: Christopher P Fredlake; Daniel G Hert; Elaine R Mardis; Annelise E Barron
What is the future of electrophoresis in large-scale genomic sequencing?
Electrophoresis 2006;27(19):3689-702.
2006: Jung D Oh; Helene Kling-Bäckhed; Marios Giannakis; Jian Xu; Robert S Fulton; Lucinda Fulton; Holland S Cordum; Chunyan Wang; Glendoria Elliott; Jennifer Edwards; Elaine R Mardis; Lars Engstrand; Jeffrey I Gordon
The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(26):9999-10004.
2006: Robert S Liao; Gregory A Storch; Richard S Buller; Rachel C Orscheln; Elaine R Mardis; Jon R Armstrong; W Michael Dunne
Blinded comparison of repetitive-sequence PCR and multilocus sequence typing for genotyping methicillin-resistant Staphylococcus aureus isolates from a children's hospital in St. Louis, Missouri.
Journal of clinical microbiology 2006;44(6):2254-7.
2006: Swaine L Chen; Chia-Seui Hung; Jian Xu; Christopher Reigstad; vincent magrini; Aniko Sabo; Darin Blasiar; Tamberlyn Bieri; Rekha R Meyer; Philip Ozersky; Jon R Armstrong; Robert S Fulton; J Phillip Latreille; John Spieth; Thomas Hooton; Elaine R Mardis; Scott J Hultgren; Jeffrey I Gordon
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(15):5977-82.
2006: Elaine R Mardis
Anticipating the 1,000 dollar genome.
Genome biology 2006;7(7):112.
2006: Matthew N Bainbridge; Rene Warren; Martin Hirst; Tammy Romanuik; Thomas Zeng; Anne Go; Allen D Delaney; Malachi Griffith; Matthew Hickenbotham; vincent magrini; Elaine R Mardis; Marianne D Sadar; Asim S Siddiqui; Marco A Marra; Steven J M Jones
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.
BMC genomics 2006;7():246.
2006: Elizabeth E Slawson; Christopher D Shaffer; Colin D Malone; Wilson Leung; Elmer Kellmann; Rachel B Shevchek; Carolyn A Craig; Seth M Bloom; James Bogenpohl; James Dee; Emiko T A Morimoto; Jenny Myoung; Andrew S Nett; Fatih Ozsolak; Mindy E Tittiger; Andrea Zeug; Mary-Lou Pardue; Jeremy Buhler; Elaine R Mardis; Sarah C R Elgin
Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.
Genome biology 2006;7(2):R15.
2006: Xiaoqiu Huang; Shiaw-Pyng Yang; Asif T Chinwalla; LaDeana W Hillier; Patrick J Minx; Elaine R Mardis; Richard K Wilson
Application of a superword array in genome assembly.
Nucleic acids research 2006;34(1):201-5.
2005: Renee D Read; Paul J Goodfellow; Elaine R Mardis; Nancy Novak; Jon R Armstrong; Ross L Cagan
A Drosophila model of multiple endocrine neoplasia type 2.
Genetics 2005;171(3):1057-81.
2005: Matthew J Walter; John S Park; Rhonda E Ries; Steven K M Lau; Michael D McLellan; Sara Jaeger; Richard K Wilson; Elaine R Mardis; Timothy J Ley
Reduced PU.1 expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARalpha.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(35):12513-8.
2005: Susan K Flowers; Carla Easter; Andrea Holmes; Brian Cohen; April E Bednarski; Elaine R Mardis; Richard K Wilson; Sarah C R Elgin
Genome science: a video tour of the Washington University Genome Sequencing Center for high school and undergraduate students.
Cell biology education 2005;4(4):291-7.
2005: Stavros Bashiardes; Rose Veile; Cynthia Helms; Elaine R Mardis; Anne M Bowcock; Rosalie A Veile
Direct genomic selection.
Nature methods 2005;2(1):63-9.
2005: Thomas Wicker; Jon S Robertson; Stefan R Schulze; F. Alex Feltus; vincent magrini; Jason A Morrison; Elaine R Mardis; Richard K Wilson; Daniel G Peterson; Andrew H Paterson; Robert Ivarie
The repetitive landscape of the chicken genome.
Genome research 2005;15(1):126-36.
2004: William Pao; Vincent A Miller; Maureen F Zakowski; Jennifer Doherty; Katerina Politi; Inderpal S Sarkaria; Bhuvanesh Singh; Robert T Heelan; Valerie W Rusch; Lucinda Fulton; Elaine R Mardis; Doris Kupfer; Richard Wilson; Mark G Kris; Harold Varmus
EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(36):13306-11.
2004: vincent magrini; Wesley C Warren; John Wallis; William Goldman; Jian Xu; Elaine R Mardis; John D McPherson
Fosmid-based physical mapping of the Histoplasma capsulatum genome.
Genome research 2004;14(8):1603-9.
2004: Elaine R Mardis
Advances in genome biology and technology.
Pharmacogenomics 2004;5(4):355-6.
2003: Timothy J Ley; Patrick J Minx; Matthew J Walter; Rhonda E Ries; Hui Sun; Michael D McLellan; John F DiPersio; Daniel C Link; Michael H Tomasson; Timothy A Graubert; howard mcleod; Hanna Khoury; Mark Watson; William D Shannon; Kathryn Trinkaus; Sharon Heath; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; Jeffrey D Milbrandt; Elaine R Mardis; Richard K Wilson
A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(24):14275-80.
2003: David Wang; Anatoly Urisman; Yu-Tsueng Liu; Michael Springer; Thomas G Ksiazek; Dean D Erdman; Elaine R Mardis; Matthew Hickenbotham; vincent magrini; James Eldred; J Phillipe Latreille; Richard K Wilson; Don Ganem; Joe L DeRisi
Viral discovery and sequence recovery using DNA microarrays.
PLoS biology 2003;1(2):E2.
2003: Richard K Wilson; Timothy J Ley; F Sessions Cole; J D Milbrandt; Sandra W Clifton; Lucinda Fulton; G Fewell; Patrick J Minx; Hui Sun; Michael D McLellan; C Pohl; Elaine R Mardis
Mutational profiling in the human genome.
Cold Spring Harbor symposia on quantitative biology 2003;68():23-9.
2003: Robert H Waterston; LaDeana W Hillier; Lucinda Fulton; Robert S Fulton; Tina Graves; Kymberlie H Pepin; Peer Bork; Mikita Suyama; David Torrents; Asif T Chinwalla; Elaine R Mardis; John D McPherson; Richard K Wilson
The human genome: genes, pseudogenes, and variation on chromosome 7.
Cold Spring Harbor symposia on quantitative biology 2003;68():13-22.
2002: Elaine R Mardis; John McPherson; Robert A Martienssen; Richard K Wilson; W Richard McCombie
What is finished, and why does it matter.
Genome research 2002;12(5):669-71.
2000: E T Stuebe; J Q Steward; Asif T Chinwalla; L L Cook; M Cook; B Fronick; K Miller; M K Mullen; D O'Brien; D A Panussis; C Pohl; J E Snider; J Strong; D Williams; Richard K Wilson; C Tibbetts; Elaine R Mardis
Modification of a commercially available DNA sequencer to increase sample throughput.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2000;19(2):101-6.
2000: R J Neuman; P C Huettner; L Li; Elaine R Mardis; B F Duffy; Richard K Wilson; Janet S Rader
Association between DQB1 and cervical cancer in patients with human papillomavirus and family controls.
Obstetrics and gynecology 2000;95(1):134-40.
1998: D A Panussis; M W Cook; L L Rifkin; J E Snider; J T Strong; R M McGrane; Richard K Wilson; Elaine R Mardis
A pneumatic device for rapid loading of DNA sequencing gels.
Genome research 1998;8(5):543-8.