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Luis Marky

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Irine Khutsishvili; Luis A Marky; Dinshaw J Patel; Conor Crean; Nicholas E Geacintov; Na Zhang; Vladimir Shafirovich
Thermodynamic profiles and nuclear magnetic resonance studies of oligonucleotide duplexes containing single diastereomeric spiroiminodihydantoin lesions.
Xin-Ming Liu; Luis A Marky; Yijia Zhang; Kenneth W Bayles; Fu Chen; Edward V Fehringer; Irine Khutsishvili; Dong Wang
Prevention of orthopedic device-associated osteomyelitis using oxacillin-containing biomineral-binding liposomes.
Jing Zhang; Luis A Marky; Naava Naslavsky; Iztok Prislan; Calliste Reiling; James B Reinecke; Paul L Sorgen; Steve Caplan
Rabankyrin-5 interacts with EHD1 and Vps26 to regulate endocytic trafficking and retromer function.

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All Publications

2013: Irine Khutsishvili; Luis A Marky; Dinshaw J Patel; Conor Crean; Nicholas E Geacintov; Na Zhang; Vladimir Shafirovich
Thermodynamic profiles and nuclear magnetic resonance studies of oligonucleotide duplexes containing single diastereomeric spiroiminodihydantoin lesions.
Biochemistry 2013;52(8):1354-63.
2012: Xin-Ming Liu; Luis A Marky; Yijia Zhang; Kenneth W Bayles; Fu Chen; Edward V Fehringer; Irine Khutsishvili; Dong Wang
Prevention of orthopedic device-associated osteomyelitis using oxacillin-containing biomineral-binding liposomes.
Pharmaceutical research 2012;29(11):3169-79.
2012: Jing Zhang; Luis A Marky; Naava Naslavsky; Iztok Prislan; Calliste Reiling; James B Reinecke; Paul L Sorgen; Steve Caplan
Rabankyrin-5 interacts with EHD1 and Vps26 to regulate endocytic trafficking and retromer function.
Traffic (Copenhagen, Denmark) 2012;13(5):745-57.
2011: Ewa A Kowal; Luis A Marky; Pradeep S Pallan; Martin Egli; Manjori Ganguly; Barry Gold; Michael P Stone
Altering the electrostatic potential in the major groove: thermodynamic and structural characterization of 7-deaza-2'-deoxyadenosine:dT base pairing in DNA.
The journal of physical chemistry. B 2011;115(47):13925-34.
2011: Iztok Prislan; Irine Khutsishvili; Luis A Marky
Interaction of minor groove ligands with G-quadruplexes: thermodynamic contributions of the number of quartets, T-U substitutions, and conformation.
Biochimie 2011;93(8):1341-50.
2011: Sreelekha K Singh; Michael P Stone; Marta W Szulik; Manjori Ganguly; Irine Khutsishvili; Luis A Marky; Barry Gold
Characterization of DNA with an 8-oxoguanine modification.
Nucleic acids research 2011;39(15):6789-801.
2011: Hardeep S Oberoi; Alexander V Kabanov; Frederic C Laquer; Luis A Marky; Tatiana K Bronich
Core cross-linked block ionomer micelles as pH-responsive carriers for cis-diamminedichloroplatinum(II).
Journal of controlled release : official journal of the Controlled Release Society 2011;153(1):64-72.
2011: William H Gmeiner; Chris M Olsen; Freddie Salsbury; Luis A Marky
The stability of a model substrate for topoisomerase 1-mediated DNA religation depends on the presence of mismatched base pairs.
Journal of nucleic acids 2011;2011():631372.
2011: Aishwarya Prakash; Luis A Marky; Amarnath Natarajan; Michel M Ouellette; Gloria E. Borgstahl
Identification of the DNA-Binding Domains of Human Replication Protein A That Recognize G-Quadruplex DNA.
Journal of nucleic acids 2011;2011():896947.
2011: Aishwarya Prakash; Fabien Kieken; Luis A Marky; Gloria E. Borgstahl
Stabilization of a G-Quadruplex from Unfolding by Replication Protein A Using Potassium and the Porphyrin TMPyP4.
Journal of nucleic acids 2011;2011():529828.
2011: Hui-Ting Lee; Caroline Carr; Hollie Siebler; Lela Waters; Irine Khutsishvili; Fany Iseka; Brian Domack; Chris M Olsen; Luis A Marky
A thermodynamic approach for the targeting of nucleic acid structures using their complementary single strands.
Methods in enzymology 2011;492():1-26.
2010: Manjori Ganguly; Ruo-Wen Wang; Luis A Marky; Barry Gold
Thermodynamic characterization of DNA with 3-deazaadenine and 3-methyl-3-deazaadenine substitutions: the effect of placing a hydrophobic group in the minor groove of DNA.
The journal of physical chemistry. B 2010;114(22):7656-61.
2010: Hui-Ting Lee; Irine Khutsishvili; Luis A Marky
DNA complexes containing joined triplex and duplex motifs: melting behavior of intramolecular and bimolecular complexes with similar sequences.
The journal of physical chemistry. B 2010;114(1):541-8.
2010: Chris M Olsen; Luis A Marky
Monitoring the temperature unfolding of G-quadruplexes by UV and circular dichroism spectroscopies and calorimetry techniques.
Methods in molecular biology (Clifton, N.J.) 2010;608():147-58.
2009: Elena I Stepchenkova; Elena R Tarakhovskaya; Kathryn Spitler; Christin Frahm; Miriam R Menezes; Peter D Simone; Carol Kolar; Luis A Marky; Gloria E. Borgstahl; Youri I Pavlov
Functional study of the P32T ITPA variant associated with drug sensitivity in humans.
Journal of molecular biology 2009;392(3):602-13.
2009: Manjori Ganguly; Ruo-Wen Wang; Luis A Marky; Barry Gold
Introduction of cationic charge into DNA near the major groove edge of a guanine x cytosine base pair: characterization of oligodeoxynucleotides substituted with 7-aminomethyl-7-deaza-2'-deoxyguanosine.
Journal of the American Chemical Society 2009;131(34):12068-9.
2009: Chris M Olsen; Hui-Ting Lee; Luis A Marky
Unfolding thermodynamics of intramolecular G-quadruplexes: base sequence contributions of the loops.
The journal of physical chemistry. B 2009;113(9):2587-95.
2008: Feng Wang; Feng Li; Manjori Ganguly; Luis A Marky; Barry Gold; Martin Egli; Michael P Stone
A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry 2008;47(27):7147-57.
2008: Hui-Ting Lee; Chris M Olsen; Lela Waters; Holly Sukup; Luis A Marky
Thermodynamic contributions of the reactions of DNA intramolecular structures with their complementary strands.
Biochimie 2008;90(7):1052-63.
2008: Hui-Ting Lee; Santiago Arciniegas; Luis A Marky
Unfolding thermodynamics of DNA pyrimidine triplexes with different molecularities.
The journal of physical chemistry. B 2008;112(15):4833-40.
2007: Xin-Ming Liu; Hui-Ting Lee; Richard A Reinhardt; Luis A Marky; Dong Wang
Novel biomineral-binding cyclodextrins for controlled drug delivery in the oral cavity.
Journal of controlled release : official journal of the Controlled Release Society 2007;122(1):54-62.
2007: Mahima Kaushik; Nathan Suehl; Luis A Marky
Calorimetric unfolding of the bimolecular and i-motif complexes of the human telomere complementary strand, d(C(3)TA(2))(4).
Biophysical chemistry 2007;126(1-3):154-64.
2007: Manjori Ganguly; Feng Wang; Mahima Kaushik; Michael P Stone; Luis A Marky; Barry Gold
A study of 7-deaza-2'-deoxyguanosine 2'-deoxycytidine base pairing in DNA.
Nucleic acids research 2007;35(18):6181-95.
2006: Chris M Olsen; William H Gmeiner; Luis A Marky
Unfolding of G-quadruplexes: energetic, and ion and water contributions of G-quartet stacking.
The journal of physical chemistry. B 2006;110(13):6962-9.
2006: Ana Maria Soto; Dionisios Rentzeperis; Ronald Shikiya; Michelle Alonso; Luis A Marky
DNA intramolecular triplexes containing dT --> dU substitutions: unfolding energetics and ligand binding.
Biochemistry 2006;45(9):3051-9.
2006: Thomas R Porter; Feng Xie; Derek Knapp; Patrick Iversen; Luis A Marky; Jeane M Tsutsui; Souvik Maiti; John Lof; Stanley J Radio; Nicholas Kipshidze
Targeted vascular delivery of antisense molecules using intravenous microbubbles.
Cardiovascular revascularization medicine : including molecular interventions 2006;7(1):25-33.
2005: Ronald Shikiya; Luis A Marky
Calorimetric unfolding of intramolecular triplexes: length dependence and incorporation of single AT --> TA substitutions in the duplex domain.
The journal of physical chemistry. B 2005;109(38):18177-83.
2005: Ronald Shikiya; Jian-Sen Li; Barry Gold; Luis A Marky
Incorporation of cationic chains in the Dickerson-Drew dodecamer: correlation of energetics, structure, and ion and water binding.
Biochemistry 2005;44(37):12582-8.
2005: Jian-Sen Li; Fa-xian Chen; Ronald Shikiya; Luis A Marky; Barry Gold
Molecular recognition via triplex formation of mixed purine/pyrimidine DNA sequences using oligoTRIPs.
Journal of the American Chemical Society 2005;127(36):12657-65.
2005: Tinoush Moulaei; Tatsuya Maehigashi; George T Lountos; Seiji Komeda; Derrick Watkins; Michael P Stone; Luis A Marky; Jian-sen Li; Barry Gold; Loren Dean Williams
Structure of B-DNA with cations tethered in the major groove.
Biochemistry 2005;44(20):7458-68.
2004: William C Culp; Thomas R Porter; John Lowery; Feng Xie; Paula K Roberson; Luis A Marky
Intracranial clot lysis with intravenous microbubbles and transcranial ultrasound in swine.
Stroke; a journal of cerebral circulation 2004;35(10):2407-11.
2004: X Mao; Luis A Marky; William H Gmeiner
NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+.
Journal of biomolecular structure & dynamics 2004;22(1):25-33.
2004: Jian-Sen Li; Ronald Shikiya; Luis A Marky; Barry Gold
Triple helix forming TRIPside molecules that target mixed purine/pyrimidine DNA sequences.
Biochemistry 2004;43(6):1440-8.
2003: Jian-Sen Li; Yun-Hua Fan; Yi Zhang; Luis A Marky; Barry Gold
Design of triple helix forming C-glycoside molecules.
Journal of the American Chemical Society 2003;125(8):2084-93.
2002: Ana Maria Soto; Jacqueline Loo; Luis A Marky
Energetic contributions for the formation of TAT/TAT, TAT/CGC(+), and CGC(+)/CGC(+) base triplet stacks.
Journal of the American Chemical Society 2002;124(48):14355-63.
2002: Besik I Kankia; Ana Maria Soto; Nicole Burns; Ronald Shikiya; Chang-Shung Tung; Luis A Marky
DNA oligonucleotide duplexes containing intramolecular platinated cross-links: energetics, hydration, sequence, and ionic effects.
Biopolymers 2002;65(3):218-27.
2002: Luis R Comolli; Nikolai B Ulyanov; Ana Maria Soto; Luis A Marky; Tom L James; William H Gmeiner
NMR structure of the 3' stem-loop from human U4 snRNA.
Nucleic acids research 2002;30(20):4371-9.
2002: Ana Maria Soto; Luis A Marky
Thermodynamic contributions for the incorporation of GTA triplets within canonical TAT/TAT and C+GC/C+GC base-triplet stacks of DNA triplexes.
Biochemistry 2002;41(41):12475-82.
2002: Ana Maria Soto; Besik I Kankia; Prasad Dande; Barry Gold; Luis A Marky
Thermodynamic and hydration effects for the incorporation of a cationic 3-aminopropyl chain into DNA.
Nucleic acids research 2002;30(14):3171-80.
2002: Ana Maria Soto; William H Gmeiner; Luis A Marky
Energetic and conformational contributions to the stability of Okazaki fragments.
Biochemistry 2002;41(21):6842-9.
2002: David Konerding; Tom L James; Eric Trump; Ana Maria Soto; Luis A Marky; William H Gmeiner
NMR structure of a gemcitabine-substituted model Okazaki fragment.
Biochemistry 2002;41(3):839-46.
2001: Besik I Kankia; Luis A Marky
Folding of the thrombin aptamer into a G-quadruplex with Sr(2+): stability, heat, and hydration.
Journal of the American Chemical Society 2001;123(44):10799-804.
2001: Ana Maria Soto; Besik I Kankia; Prasad Dande; Barry Gold; Luis A Marky
Incorporation of a cationic aminopropyl chain in DNA hairpins: thermodynamics and hydration.
Nucleic acids research 2001;29(17):3638-45.
2001: Dharini Shah; J Kelly; Y Zhang; Prasad Dande; J Martinez; G Ortiz; Gilberto Fronza; H Tran; Ana Maria Soto; Luis A Marky; Barry Gold
Evidence in Escherichia coli that N3-methyladenine lesions induced by a minor groove binding methyl sulfonate ester can be processed by both base and nucleotide excision repair.
Biochemistry 2001;40(6):1796-803.
2001: Luis A Marky; DW Kupke; Besik I Kankia
Volume changes accompanying interaction of ligands with nucleic acids.
Methods in enzymology 2001;340():149-65.
2000: William H Gmeiner; Wei Cui; S Sharma; Ana Maria Soto; Luis A Marky; J William Lown
Shape-selective binding of geometrically-constrained bis-distamycins to a DNA duplex and a model Okazaki fragment of identical sequence.
Nucleosides, nucleotides & nucleic acids 2000;19(8):1365-79.
2000: William H Gmeiner; C J Hudalla; Ana Maria Soto; Luis A Marky
Binding of ethidium to DNA measured using a 2D diffusion-modulated gradient COSY NMR experiment.
FEBS letters 2000;465(2-3):148-52.
2000: Luis A Marky; DW Kupke
Enthalpy-entropy compensations in nucleic acids: contribution of electrostriction and structural hydration.
Methods in enzymology 2000;323():419-41.
1999: William H Gmeiner; Wei Cui; David Konerding; Paul A Keifer; S K Sharma; Ana Maria Soto; Luis A Marky; J William Lown
Shape-selective recognition of a model Okazaki fragment by geometrically-constrained bis-distamycins.
Journal of biomolecular structure & dynamics 1999;17(3):507-18.
1997: M Zhong; Luis A Marky; Neville R Kallenbach; DW Kupke
Thermodynamics of dT--dT base pair mismatching in linear DNA duplexes and three-arm DNA junctions.
Biochemistry 1997;36(9):2485-91.