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David Martin

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Mouse

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Publications

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Joseph M Dhahbi; Noel Guerrero; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
Deep sequencing identifies circulating mouse miRNAs that are functionally implicated in manifestations of aging and responsive to calorie restriction.
Joseph M Dhahbi; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.
Dario Boffelli; David I K Martin
Epigenetic inheritance: a contributor to species differentiation?

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All Publications

2013: Joseph M Dhahbi; Noel Guerrero; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
Deep sequencing identifies circulating mouse miRNAs that are functionally implicated in manifestations of aging and responsive to calorie restriction.
Aging 2013;5(2):130-41.
2013: Joseph M Dhahbi; Hani Atamna; Dario Boffelli; Patricia L Mote; Stephen R Spindler; Amy Yamakawa; David I K Martin
5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.
BMC genomics 2013;14():298.
2012: Dario Boffelli; David I K Martin
Epigenetic inheritance: a contributor to species differentiation?
DNA and cell biology 2012;31 Suppl 1():S11-6.
2012: Jennifer E Cropley; Thurston H Y Dang; David I K Martin; Catherine M Suter
The penetrance of an epigenetic trait in mice is progressively yet reversibly increased by selection and environment.
Proceedings. Biological sciences / The Royal Society 2012;279(1737):2347-53.
2012: Joseph M Dhahbi; David I K Martin; Hani Atamna; Dario Boffelli; Stephen R Spindler
mRNA-Seq reveals complex patterns of gene regulation and expression in the mouse skeletal muscle transcriptome associated with calorie restriction.
Physiological genomics 2012;44(6):331-44.
2012: Lucia Carbone; Nicoletta Archidiacono; Mark A Batzer; Oronzo Capozzi; Ronald Harris; Miriam K Konkel; David I K Martin; Aleksandar Milosavljevic; Alan R Mootnick; Mariano Rocchi; Jerilyn A Walker; Pieter J de Jong
Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons.
Genome biology and evolution 2012;4(7):648-58.
2011: David I K Martin; Lior Pachter; Gary P Schroth; Meromit Singer; Lu Zhang; Joseph M Dhahbi; Guanxiong Mao; Dario Boffelli
Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states.
Genome research 2011;21(12):2049-57.
2011: David I K Martin; Jennifer E Cropley; Catherine M Suter
Epigenetics in disease: leader or follower?
Epigenetics : official journal of the DNA Methylation Society 2011;6(7):843-8.
2011: Cheryl C Y Li; Jennifer E Cropley; Mark J Cowley; Thomas Preiss; David I K Martin; Catherine M Suter
A sustained dietary change increases epigenetic variation in isogenic mice.
PLoS genetics 2011;7(4):e1001380.
2011: Frazer Meacham; Dario Boffelli; Joseph Dhahbi; David I K Martin; Meromit Singer; Lior Pachter
Identification and correction of systematic error in high-throughput sequence data.
BMC bioinformatics 2011;12():451.
2011: Joseph M Dhahbi; Hani Atamna; Dario Boffelli; Wendy Magis; Stephen R Spindler; David I K Martin
Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence.
PloS one 2011;6(5):e20509.
2010: Meromit Singer; Dario Boffelli; Joseph Dhahbi; Alexander Schönhuth; Gary P Schroth; David I K Martin; Lior Pachter
MetMap enables genome-scale Methyltyping for determining methylation states in populations.
PLoS computational biology 2010;6(8):e1000888.
2010: Jennifer E Cropley; Catherine M Suter; Kenneth B Beckman; David I K Martin
CpG methylation of a silent controlling element in the murine Avy allele is incomplete and unresponsive to methyl donor supplementation.
PloS one 2010;5(2):e9055.
2010: Catherine M Suter; David I K Martin
Paramutation: the tip of an epigenetic iceberg?
Trends in genetics : TIG 2010;26(1):9-14.
2009: Traude H Beilharz; David T Humphreys; Jennifer L Clancy; Rolf Thermann; David I K Martin; Matthias W Hentze; Thomas Preiss
microRNA-mediated messenger RNA deadenylation contributes to translational repression in mammalian cells.
PloS one 2009;4(8):e6783.
2008: David I K Martin; Jennifer E Cropley; Catherine M Suter
Environmental influence on epigenetic inheritance at the Avy allele.
Nutrition reviews 2008;66 Suppl 1():S12-4.
2008: Ming Li; Nawazish Naqvi; Eiji Yahiro; Ke Liu; Pamela C Powell; Wayne E Bradley; David I K Martin; Robert M Graham; Louis J Dell'Italia; Ahsan Husain
c-kit is required for cardiomyocyte terminal differentiation.
Circulation research 2008;102(6):677-85.
2007: Jennifer E Cropley; David I K Martin
Controlling elements are wild cards in the epigenomic deck.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(48):18879-80.
2007: Jennifer E Cropley; Catherine M Suter; David I K Martin
Methyl donors change the germline epigenetic state of the A(vy) allele.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2007;21(12):3021; author reply 3021-2.
2007: Mei Hsu; Rodwell Mabaera; Christopher H Lowrey; David I K Martin; Steven Fiering
CpG hypomethylation in a large domain encompassing the embryonic beta-like globin genes in primitive erythrocytes.
Molecular and cellular biology 2007;27(13):5047-54.
2007: Catherine M Suter; David I K Martin
Inherited epimutation or a haplotypic basis for the propensity to silence?
Nature genetics 2007;39(5):573; author reply 576.
2007: Megan P Hitchins; Justin J L Wong; Graeme Suthers; Catherine M Suter; David I K Martin; Nicholas Hawkins; Robyn L Ward
Inheritance of a cancer-associated MLH1 germ-line epimutation.
The New England journal of medicine 2007;356(7):697-705.
2006: Jennifer E Cropley; Catherine M Suter; Kenneth B Beckman; David I K Martin
Germ-line epigenetic modification of the murine A vy allele by nutritional supplementation.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(46):17308-12.
2005: David T Humphreys; Belinda J Westman; David I K Martin; Thomas Preiss
MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(47):16961-6.
2005: David P Lu; Rebecca L Read; David T Humphreys; Fiona M Battah; David I K Martin; John Rasko
PCR-based expression analysis and identification of microRNAs.
Journal of RNAi and gene silencing : an international journal of RNA and gene targeting research 2005;1(1):44-9.
2005: David I K Martin; Robyn Ward; Catherine M Suter
Germline epimutation: A basis for epigenetic disease in humans.
Annals of the New York Academy of Sciences 2005;1054():68-77.
2004: Catherine M Suter; David I K Martin; Robyn L Ward
Germline epimutation of MLH1 in individuals with multiple cancers.
Nature genetics 2004;36(5):497-501.
2004: Catherine M Suter; David I K Martin; Robyn L Ward
Hypomethylation of L1 retrotransposons in colorectal cancer and adjacent normal tissue.
International journal of colorectal disease 2004;19(2):95-101.
2003: Nathan B Sutter; d scalzo; Steven Fiering; Mark Groudine; David I K Martin
Chromatin insulation by a transcriptional activator.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(3):1105-10.
2002: David I K Martin
Activators antagonize heterochromatic silencing: reply to Eissenberg.
BioEssays : news and reviews in molecular, cellular and developmental biology 2002;24(1):102; author reply 103.
2002: Susan K Eszterhas; Eric E Bouhassira; David I K Martin; Steven Fiering
Transcriptional interference by independently regulated genes occurs in any relative arrangement of the genes and is influenced by chromosomal integration position.
Molecular and cellular biology 2002;22(2):469-79.
2001: David I K Martin
Transcriptional enhancers--on/off gene regulation as an adaptation to silencing in higher eukaryotic nuclei.
Trends in genetics : TIG 2001;17(8):444-8.
2001: Emma Whitelaw; David I K Martin
Retrotransposons as epigenetic mediators of phenotypic variation in mammals.
Nature genetics 2001;27(4):361-5.
2000: Claire Francastel; Dirk Schübeler; David I K Martin; M Groudine
Nuclear compartmentalization and gene activity.
Nature reviews. Molecular cell biology 2000;1(2):137-43.
2000: HG Sutherland; M Kearns; Hugh D Morgan; A P Headley; Christine Morris; David I K Martin; Emma Whitelaw
Reactivation of heritably silenced gene expression in mice.
Mammalian genome : official journal of the International Mammalian Genome Society 2000;11(5):347-55.
2000: Dirk Schübeler; Claire Francastel; Daniel M Cimbora; A Reik; David I K Martin; Mark Groudine
Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus.
Genes & development 2000;14(8):940-50.
2000: Steven Fiering; Emma Whitelaw; David I K Martin
To be or not to be active: the stochastic nature of enhancer action.
BioEssays : news and reviews in molecular, cellular and developmental biology 2000;22(4):381-7.
2000: Matthew C Lorincz; Dirk Schübeler; S C Goeke; M Walters; Mark Groudine; David I K Martin
Dynamic analysis of proviral induction and De Novo methylation: implications for a histone deacetylase-independent, methylation density-dependent mechanism of transcriptional repression.
Molecular and cellular biology 2000;20(3):842-50.
1999: Hugh D Morgan; HG Sutherland; David I K Martin; Emma Whitelaw
Epigenetic inheritance at the agouti locus in the mouse.
Nature genetics 1999;23(3):314-8.
1999: Claire Francastel; MC Walters; Mark Groudine; David I K Martin
A functional enhancer suppresses silencing of a transgene and prevents its localization close to centrometric heterochromatin.
Cell 1999;99(3):259-69.
1999: MC Walters; Steven Fiering; Eric E Bouhassira; d scalzo; S Goeke; W Magis; D Garrick; Emma Whitelaw; David I K Martin
The chicken beta-globin 5'HS4 boundary element blocks enhancer-mediated suppression of silencing.
Molecular and cellular biology 1999;19(5):3714-26.
1999: Matthew C Lorincz; M K Parente; M Roederer; Garry P Nolan; Zhenjun Diwu; David I K Martin; Leonore A Herzenberg; J H Wolfe
Single cell analysis and selection of living retrovirus vector-corrected mucopolysaccharidosis VII cells using a fluorescence-activated cell sorting-based assay for mammalian beta-glucuronidase enzymatic activity.
The Journal of biological chemistry 1999;274(2):657-65.
1998: Elliot M Epner; A Reik; Daniel M Cimbora; Agnes Telling; MA Bender; Steven Fiering; Tariq Enver; David I K Martin; M Kennedy; G Keller; Mark Groudine
The beta-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse beta-globin locus.
Molecular cell 1998;2(4):447-55.
1998: D Garrick; Steven Fiering; David I K Martin; Emma Whitelaw
Repeat-induced gene silencing in mammals.
Nature genetics 1998;18(1):56-9.
1997: H G Sutherland; David I K Martin; Emma Whitelaw
A globin enhancer acts by increasing the proportion of erythrocytes expressing a linked transgene.
Molecular and cellular biology 1997;17(3):1607-14.
1997: Claire Francastel; Yvette Augery-Bourget; Michel Prenant; M Walters; David I K Martin; Jacqueline Robert-Lézénès
c-Jun inhibits NF-E2 transcriptional activity in association with p18/maf in Friend erythroleukemia cells.
Oncogene 1997;14(7):873-7.
1996: W Magis; Steven Fiering; Mark Groudine; David I K Martin
An upstream activator of transcription coordinately increases the level and epigenetic stability of gene expression.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(24):13914-8.
1996: Laurie A Milner; Anna Bigas; Raphael Kopan; C Brashem-Stein; Irwin D Bernstein; David I K Martin
Inhibition of granulocytic differentiation by mNotch1.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(23):13014-9.
1996: David I K Martin; Emma Whitelaw
The vagaries of variegating transgenes.
BioEssays : news and reviews in molecular, cellular and developmental biology 1996;18(11):919-23.
1996: David I K Martin; Steven Fiering; Mark Groudine
Regulation of beta-globin gene expression: straightening out the locus.
Current opinion in genetics & development 1996;6(4):488-95.
1996: G Robertson; D Garrick; M Wilson; David I K Martin; Emma Whitelaw
Age-dependent silencing of globin transgenes in the mouse.
Nucleic acids research 1996;24(8):1465-71.
1996: M Walters; N C Andrews; W Magis; David I K Martin
Erythroid AP-1/NF-E2 elements vary in their response to NF-E2.
Experimental hematology 1996;24(3):445-52.
1996: M C Walters; W Magis; Steven Fiering; J Eidemiller; d scalzo; Mark Groudine; David I K Martin
Transcriptional enhancers act in cis to suppress position-effect variegation.
Genes & development 1996;10(2):185-95.
1995: W Magis; David I K Martin
HMG-I binds to GATA motifs: implications for an HPFH syndrome.
Biochemical and biophysical research communications 1995;214(3):927-33.
1995: Steven Fiering; Elliot M Epner; K Robinson; Y Zhuang; Agnes Telling; M Hu; David I K Martin; T Enver; Timothy J Ley; Mark Groudine
Targeted deletion of 5'HS2 of the murine beta-globin LCR reveals that it is not essential for proper regulation of the beta-globin locus.
Genes & development 1995;9(18):2203-13.
1995: M C Walters; Steven Fiering; J Eidemiller; W Magis; Mark Groudine; David I K Martin
Enhancers increase the probability but not the level of gene expression.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(15):7125-9.
1995: Anna Bigas; David I K Martin; Irwin D Bernstein
Generation of hematopoietic colony-forming cells from embryonic stem cells: synergy between a soluble factor from NIH-3T3 cells and hematopoietic growth factors.
Blood 1995;85(11):3127-33.
1994: Laurie A Milner; Raphael Kopan; David I K Martin; Irwin D Bernstein
A human homologue of the Drosophila developmental gene, Notch, is expressed in CD34+ hematopoietic precursors.
Blood 1994;83(8):2057-62.
1992: M Walters; David I K Martin
Functional erythroid promoters created by interaction of the transcription factor GATA-1 with CACCC and AP-1/NFE-2 elements.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(21):10444-8.