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Shinichiro Maruyama

Research Profile

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Plastids

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Horizontal Gene Transfer

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Genomics

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Publications

TOP 3
Hisayoshi Nozaki; Shinichiro Maruyama; Yi Yang; Toshinobu Suzaki
A case study for effects of operational taxonomic units from intracellular endoparasites and ciliates on the eukaryotic phylogeny: phylogenetic position of the haptophyta in analyses of multiple slowly evolving genes.
Yi Yang; Shinichiro Maruyama; Hidetoshi Sakayama; Hiroyuki Sekimoto; Hisayoshi Nozaki
An extended phylogenetic analysis reveals ancient origin of "non-green" phosphoribulokinase genes from two lineages of "green" secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta.
Shinichiro Maruyama; Toshinobu Suzaki; Andreas P M Weber; John M Archibald; Hisayoshi Nozaki
Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids.

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All Publications

2012: Hisayoshi Nozaki; Shinichiro Maruyama; Yi Yang; Toshinobu Suzaki
A case study for effects of operational taxonomic units from intracellular endoparasites and ciliates on the eukaryotic phylogeny: phylogenetic position of the haptophyta in analyses of multiple slowly evolving genes.
PloS one 2012;7(11):e50827.
2011: Yi Yang; Shinichiro Maruyama; Hidetoshi Sakayama; Hiroyuki Sekimoto; Hisayoshi Nozaki
An extended phylogenetic analysis reveals ancient origin of "non-green" phosphoribulokinase genes from two lineages of "green" secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta.
BMC research notes 2011;4():330.
2011: Shinichiro Maruyama; Toshinobu Suzaki; Andreas P M Weber; John M Archibald; Hisayoshi Nozaki
Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids.
BMC evolutionary biology 2011;11():105.
2009: Hisayoshi Nozaki; Shinichiro Maruyama; Motomichi Matsuzaki; Takashi Nakada; Syou Kato; Kazuharu Misawa
Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes.
Molecular phylogenetics and evolution 2009;53(3):872-80.
2009: Shinichiro Maruyama; Motomichi Matsuzaki; Kazuharu Misawa; Hisayoshi Nozaki
Cyanobacterial contribution to the genomes of the plastid-lacking protists.
BMC evolutionary biology 2009;9():197.
2008: Shinichiro Maruyama; Motomichi Matsuzaki; Haruko Kuroiwa; Shin-ya Miyagishima; Kan Tanaka; Tsuneyoshi Kuroiwa; Hisayoshi Nozaki
Centromere structures highlighted by the 100%-complete Cyanidioschyzon merolae genome.
Plant signaling & behavior 2008;3(2):140-1.
2008: Shinichiro Maruyama; Kazuharu Misawa; Mineo Iseki; Masakatsu Watanabe; Hisayoshi Nozaki
Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes.
BMC evolutionary biology 2008;8():151.
2007: Shinichiro Maruyama; Hisayoshi Nozaki
Sequence and intranuclear location of the extrachromosomal rDNA plasmid of the amoebo-flagellate Naegleria gruberi.
The Journal of eukaryotic microbiology 2007;54(4):333-7.
2007: Hisayoshi Nozaki; Hiroyoshi Takano; Osami Misumi; Kimihiro Terasawa; Motomichi Matsuzaki; Shinichiro Maruyama; Keiji Nishida; Fumi Yagisawa; Yamato Yoshida; Takayuki Fujiwara; Susumu Takio; Katsunori Tamura; Sung Jin Chung; Soichi Nakamura; Haruko Kuroiwa; Kan Tanaka; Naoki Sato; Tsuneyoshi Kuroiwa
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae.
BMC biology 2007;5():28.
2006: Akitoshi Iwamoto; Daisuke Satoh; Masahiko Furutani; Shinichiro Maruyama; Hideaki Ohba; Munetaka Sugiyama
Insight into the basis of root growth in Arabidopsis thaliana provided by a simple mathematical model.
Journal of plant research 2006;119(2):85-93.
2004: Shinichiro Maruyama; Osami Misumi; Yasuyuki Ishii; Shuichi Asakawa; Atsushi Shimizu; Takashi Sasaki; Motomichi Matsuzaki; Tadasu Shin-i; Hisayoshi Nozaki; Yuji Kohara; Nobuyoshi Shimizu; Tsuneyoshi Kuroiwa
The minimal eukaryotic ribosomal DNA units in the primitive red alga Cyanidioschyzon merolae.
DNA research : an international journal for rapid publication of reports on genes and genomes 2004;11(2):83-91.