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Ichiro Matsumura

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TOP 3
Ichiro Matsumura
A quarter century of reaping what we SOE.
Andrei Ivanov; Ichiro Matsumura
The adenosine deaminases of Plasmodium vivax and Plasmodium falciparum exhibit surprising differences in ligand specificity.
Charles Daniel Murin; Kristy Segal; Anton Bryksin; Ichiro Matsumura
Expression vectors for Acinetobacter baylyi ADP1.

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All Publications

2013: Ichiro Matsumura
A quarter century of reaping what we SOE.
BioTechniques 2013;54(3):127-8.
2012: Andrei Ivanov; Ichiro Matsumura
The adenosine deaminases of Plasmodium vivax and Plasmodium falciparum exhibit surprising differences in ligand specificity.
Journal of molecular graphics & modelling 2012;35():43-8.
2012: Charles Daniel Murin; Kristy Segal; Anton Bryksin; Ichiro Matsumura
Expression vectors for Acinetobacter baylyi ADP1.
Applied and environmental microbiology 2012;78(1):280-3.
2010: Anton V Bryksin; Ichiro Matsumura
Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids.
BioTechniques 2010;48(6):463-5.
2010: Anton V Bryksin; Ichiro Matsumura
Rational design of a plasmid origin that replicates efficiently in both gram-positive and gram-negative bacteria.
PloS one 2010;5(10):e13244.
2009: Ichiro Matsumura; Andrei A Ivanov
How evolving enzymes can beat the heat and avoid defeat.
Nature chemical biology 2009;5(8):538-9.
2008: Wayne M Patrick; Ichiro Matsumura
A study in molecular contingency: glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase.
Journal of molecular biology 2008;377(2):323-36.
2007: Wayne M Patrick; Erik M Quandt; Dan B Swartzlander; Ichiro Matsumura
Multicopy suppression underpins metabolic evolvability.
Molecular biology and evolution 2007;24(12):2716-22.
2007: Melissa L Geddie; Ichiro Matsumura
Antibody-induced oligomerization and activation of an engineered reporter enzyme.
Journal of molecular biology 2007;369(4):1052-9.
2007: Dina N Greene; Spencer M Whitney; Ichiro Matsumura
Artificially evolved Synechococcus PCC6301 Rubisco variants exhibit improvements in folding and catalytic efficiency.
The Biochemical journal 2007;404(3):517-24.
2006: Taryn L O'Loughlin; Wayne M Patrick; Ichiro Matsumura
Natural history as a predictor of protein evolvability.
Protein engineering, design & selection : PEDS 2006;19(10):439-42.
2006: Karen M Polizzi; Monal Parikh; Cody U Spencer; Ichiro Matsumura; Jay H Lee; Matthew J Realff; Andreas S Bommarius
Pooling for improved screening of combinatorial libraries for directed evolution.
Biotechnology progress 2006;22(4):961-7.
2006: Taryn L O'Loughlin; Ichiro Matsumura
HIV protease-activated molecular switches based on beta-glucuronidase and alkaline phosphatase.
Combinatorial chemistry & high throughput screening 2006;9(4):313-20.
2006: Taryn L O'Loughlin; Dina N Greene; Ichiro Matsumura
Diversification and specialization of HIV protease function during in vitro evolution.
Molecular biology and evolution 2006;23(4):764-72.
2006: Monal R Parikh; Dina N Greene; Kristen K Woods; Ichiro Matsumura
Directed evolution of RuBisCO hypermorphs through genetic selection in engineered E.coli.
Protein engineering, design & selection : PEDS 2006;19(3):113-9.
2005: Karen M Polizzi; Cody U Spencer; Anshul Dubey; Ichiro Matsumura; Jay H Lee; Matthew J Realff; Andreas S Bommarius
Simulation modeling of pooling for combinatorial protein engineering.
Journal of biomolecular screening 2005;10(8):856-64.
2005: Melissa L Geddie; Taryn L O'Loughlin; Kristen K Woods; Ichiro Matsumura
Rational design of p53, an intrinsically unstructured protein, for the fabrication of novel molecular sensors.
The Journal of biological chemistry 2005;280(42):35641-6.
2005: Monal R Parikh; Ichiro Matsumura
Site-saturation mutagenesis is more efficient than DNA shuffling for the directed evolution of beta-fucosidase from beta-galactosidase.
Journal of molecular biology 2005;352(3):621-8.
2005: Ichiro Matsumura; Lori A Rowe
Whole plasmid mutagenic PCR for directed protein evolution.
Biomolecular engineering 2005;22(1-3):73-9.
2004: Melissa L Geddie; Ichiro Matsumura
Rapid evolution of beta-glucuronidase specificity by saturation mutagenesis of an active site loop.
The Journal of biological chemistry 2004;279(25):26462-8.
2004: Melissa L Geddie; Lori A Rowe; Omar B Alexander; Ichiro Matsumura
High throughput microplate screens for directed protein evolution.
Methods in enzymology 2004;388():134-45.
2003: Lori A Rowe; Melissa L Geddie; Omar B Alexander; Ichiro Matsumura
A comparison of directed evolution approaches using the beta-glucuronidase model system.
Journal of molecular biology 2003;332(4):851-60.
2002: Ichiro Matsumura; Andrew D Ellington
Mutagenic polymerase chain reaction of protein-coding genes for in vitro evolution.
Methods in molecular biology (Clifton, N.J.) 2002;182():259-67.
2001: Ichiro Matsumura; Mark J Olsen; A D Ellington
Optimization of heterologous gene expression for in vitro evolution.
BioTechniques 2001;30(3):474-6.
2001: Ichiro Matsumura; Andrew D Ellington
In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates.
Journal of molecular biology 2001;305(2):331-9.
1999: Ichiro Matsumura; John B Wallingford; N K Surana; Peter D Vize; Andrew D Ellington
Directed evolution of the surface chemistry of the reporter enzyme beta-glucuronidase.
Nature biotechnology 1999;17(7):696-701.
1999: Ichiro Matsumura; Andrew D Ellington
In vitro evolution of thermostable p53 variants.
Protein science : a publication of the Protein Society 1999;8(4):731-40.
1997: S E Osborne; Ichiro Matsumura; AD Ellington
Aptamers as therapeutic and diagnostic reagents: problems and prospects.
Current opinion in chemical biology 1997;1(1):5-9.
1996: Ichiro Matsumura; A D Ellington
DNA shuffling brightens prospects for GFP.
Nature biotechnology 1996;14(3):366.
1996: Ichiro Matsumura; Jack F Kirsch
Synergistic contributions of asparagine 46 and aspartate 52 to the catalytic mechanism of chicken egg white lysozyme.
Biochemistry 1996;35(6):1890-6.
1996: Ichiro Matsumura; Jack F Kirsch
Is aspartate 52 essential for catalysis by chicken egg white lysozyme? The role of natural substrate-assisted hydrolysis.
Biochemistry 1996;35(6):1881-9.
1990: C J Wedeen; R G Kostriken; Ichiro Matsumura; David A Weisblat
Evidence for a new family of evolutionarily conserved homeobox genes.
Nucleic acids research 1990;18(7):1908.