FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Stephen Mayo

Research Profile

Concepts & Ideas

Procedures

Chemicals & Drugs

Proteins

Activities & Behaviors

Computer Simulation

Occupations

Phenomena

Genes & Molecular Sequences

Amino Acid Sequences

Physiology

Disorders

Protein Denaturation

Living Beings

Escherichia coli

Co-author Network

Publications

TOP 3
Mohsen Chitsaz; Stephen L Mayo
GRID: a high-resolution protein structure refinement algorithm.
Oscar Alvizo; Stephen L Mayo; Seema Mittal; Celia A Schiffer
Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease.
Mike M Y Chen; Stephen L Mayo; Christopher D Snow; Christina L Vizcarra; Frances H Arnold
Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Stephen Mayo (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2013: Mohsen Chitsaz; Stephen L Mayo
GRID: a high-resolution protein structure refinement algorithm.
Journal of computational chemistry 2013;34(6):445-50.
2012: Oscar Alvizo; Stephen L Mayo; Seema Mittal; Celia A Schiffer
Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease.
Protein science : a publication of the Protein Society 2012;21(7):1029-41.
2012: Mike M Y Chen; Stephen L Mayo; Christopher D Snow; Christina L Vizcarra; Frances H Arnold
Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes.
Protein engineering, design & selection : PEDS 2012;25(4):171-8.
2012: Heidi K Privett; Leonard M Thomas; Rebecca Blomberg; Roberto A Chica; Donald Hilvert; Kendall N Houk; Gert Kiss; Toni M Lee; Stephen L Mayo
Iterative approach to computational enzyme design.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(10):3790-5.
2012: Matthew M Moore; Samuel K Oteng-Pabi; Antonia T Pandelieva; Stephen L Mayo; Roberto A Chica
Recovery of red fluorescent protein chromophore maturation deficiency through rational design.
PloS one 2012;7(12):e52463.
2011: Toni M Lee; Frances H Arnold; Mary F Farrow; Stephen L Mayo
A structural study of Hypocrea jecorina Cel5A.
Protein science : a publication of the Protein Society 2011;20(11):1935-40.
2011: Jennifer R Keeffe; Pamela J Bjorkman; Sarah K Gillespie; Priyanthi N P Gnanapragasam; John Yong; Stephen L Mayo
Designed oligomers of cyanovirin-N show enhanced HIV neutralization.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(34):14079-84.
2011: Xin Zhang; Vinh Q Lam; Yun Mou; Tetsunari Kimura; Jaeyoon Chung; Sowmya Chandrasekar; Jay R Winkler; Stephen L Mayo; Shu-ou Shan
Direct visualization reveals dynamics of a transient intermediate during protein assembly.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(16):6450-5.
2010: Roberto A Chica; Matthew M Moore; Benjamin D Allen; Stephen L Mayo
Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(47):20257-62.
2010: Benjamin D Allen; Alex Nisthal; Stephen L Mayo
Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(46):19838-43.
2010: Benjamin D Allen; Stephen L Mayo
An efficient algorithm for multistate protein design based on FASTER.
Journal of computational chemistry 2010;31(5):904-16.
2008: Oscar Alvizo; Stephen L Mayo
Evaluating and optimizing computational protein design force fields using fixed composition-based negative design.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(34):12242-7.
2008: Christina L Vizcarra; Naigong Zhang; Shannon A Marshall; Ned S Wingreen; Chen Zeng; Stephen L Mayo
An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design.
Journal of computational chemistry 2008;29(7):1153-62.
2007: Po-Ssu Huang; John J Love; Stephen L Mayo
A de novo designed protein protein interface.
Protein science : a publication of the Protein Society 2007;16(12):2770-4.
2007: Premal S Shah; Geoffrey K Hom; Scott A Ross; Jonathan Kyle Lassila; Karin A Crowhurst; Stephen L Mayo
Full-sequence computational design and solution structure of a thermostable protein variant.
Journal of molecular biology 2007;372(1):1-6.
2007: Jonathan Kyle Lassila; Jennifer R Keeffe; Peter Kast; Stephen L Mayo
Exhaustive mutagenesis of six secondary active-site residues in Escherichia coli chorismate mutase shows the importance of hydrophobic side chains and a helix N-capping position for stability and catalysis.
Biochemistry 2007;46(23):6883-91.
2007: Eun Jung Choi; Jessica Mao; Stephen L Mayo
Computational design and biochemical characterization of maize nonspecific lipid transfer protein variants for biosensor applications.
Protein science : a publication of the Protein Society 2007;16(4):582-8.
2007: Thomas P Treynor; Christina L Vizcarra; Daniel Nedelcu; Stephen L Mayo
Computationally designed libraries of fluorescent proteins evaluated by preservation and diversity of function.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(1):48-53.
2007: Oscar Alvizo; Benjamin D Allen; Stephen L Mayo
Computational protein design promises to revolutionize protein engineering.
BioTechniques 2007;42(1):31, 33, 35 passim.
2006: Marco A Mena; Thomas P Treynor; Stephen L Mayo; Patrick S Daugherty
Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library.
Nature biotechnology 2006;24(12):1569-71.
2006: Jonathan Kyle Lassila; Heidi K Privett; Benjamin D Allen; Stephen L Mayo
Combinatorial methods for small-molecule placement in computational enzyme design.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(45):16710-5.
2006: Julia M Shifman; Mee H Choi; Stefan Mihalas; Stephen L Mayo; Mary B Kennedy
Ca2+/calmodulin-dependent protein kinase II (CaMKII) is activated by calmodulin with two bound calciums.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(38):13968-73.
2006: Eric S Zollars; Shannon A Marshall; Stephen L Mayo
Simple electrostatic model improves designed protein sequences.
Protein science : a publication of the Protein Society 2006;15(8):2014-8.
2006: Benjamin D Allen; Stephen L Mayo
Dramatic performance enhancements for the FASTER optimization algorithm.
Journal of computational chemistry 2006;27(10):1071-5.
2006: Eun Jung Choi; Stephen L Mayo
Generation and analysis of proline mutants in protein G.
Protein engineering, design & selection : PEDS 2006;19(6):285-9.
2006: Geoffrey K Hom; Stephen L Mayo
A search algorithm for fixed-composition protein design.
Journal of computational chemistry 2006;27(3):375-8.
2005: Christina L Vizcarra; Stephen L Mayo
Electrostatics in computational protein design.
Current opinion in chemical biology 2005;9(6):622-6.
2005: Po-Ssu Huang; John J Love; Stephen L Mayo
Adaptation of a fast Fourier transform-based docking algorithm for protein design.
Journal of computational chemistry 2005;26(12):1222-32.
2005: Peter Oelschlaeger; Stephen L Mayo
Hydroxyl groups in the (beta)beta sandwich of metallo-beta-lactamases favor enzyme activity: a computational protein design study.
Journal of molecular biology 2005;350(3):395-401.
2005: Shannon A Marshall; Christina L Vizcarra; Stephen L Mayo
One- and two-body decomposable Poisson-Boltzmann methods for protein design calculations.
Protein science : a publication of the Protein Society 2005;14(5):1293-304.
2005: Jonathan Kyle Lassila; Jennifer R Keeffe; Peter Oelschlaeger; Stephen L Mayo
Computationally designed variants of Escherichia coli chorismate mutase show altered catalytic activity.
Protein engineering, design & selection : PEDS 2005;18(4):161-3.
2005: Geoffrey K Hom; Jonathan Kyle Lassila; Leonard Thomas; Stephen L Mayo
Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant.
Protein science : a publication of the Protein Society 2005;14(4):1115-9.
2005: Peter Oelschlaeger; Stephen L Mayo; Juergen Pleiss
Impact of remote mutations on metallo-beta-lactamase substrate specificity: implications for the evolution of antibiotic resistance.
Protein science : a publication of the Protein Society 2005;14(3):765-74.
2004: Premal S Shah; Geoffrey K Hom; Stephen L Mayo
Preprocessing of rotamers for protein design calculations.
Journal of computational chemistry 2004;25(14):1797-800.
2004: Ushma J Shukla; Heather Marino; Po-Ssu Huang; Stephen L Mayo; John J Love
A designed protein interface that blocks fibril formation.
Journal of the American Chemical Society 2004;126(43):13914-5.
2003: Julia M Shifman; Stephen L Mayo
Exploring the origins of binding specificity through the computational redesign of calmodulin.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(23):13274-9.
2003: Greg A Lazar; Shannon A Marshall; Joseph J Plecs; Stephen L Mayo; John Desjarlais
Designing proteins for therapeutic applications.
Current opinion in structural biology 2003;13(4):513-8.
2003: Michelle M Meyer; Jonathan J Silberg; Chris A Voigt; Jeffrey B Endelman; Stephen L Mayo; Zhen-Gang Wang; Frances H Arnold
Library analysis of SCHEMA-guided protein recombination.
Protein science : a publication of the Protein Society 2003;12(8):1686-93.
2003: Blake Gillespie; Dung M Vu; Premal S Shah; Shannon A Marshall; Brian Dyer; Stephen L Mayo; Kevin W Plaxco
NMR and temperature-jump measurements of de novo designed proteins demonstrate rapid folding in the absence of explicit selection for kinetics.
Journal of molecular biology 2003;330(4):813-9.
2003: Daniel N. Bolon; Joshua S Marcus; Scott A Ross; Stephen L Mayo
Prudent modeling of core polar residues in computational protein design.
Journal of molecular biology 2003;329(3):611-22.
2003: D Benjamin Gordon; Geoffrey K Hom; Stephen L Mayo; Niles A Pierce
Exact rotamer optimization for protein design.
Journal of computational chemistry 2003;24(2):232-43.
2002: Julia M Shifman; Stephen L Mayo
Modulating calmodulin binding specificity through computational protein design.
Journal of molecular biology 2002;323(3):417-23.
2002: Deepshikha Datta; Stephen L Mayo
A designed apoplastocyanin variant that shows reversible folding.
Biochemical and biophysical research communications 2002;296(4):988-90.
2002: Chris A Voigt; Carlos Martinez; Zhen-Gang Wang; Stephen L Mayo; Frances H Arnold
Protein building blocks preserved by recombination.
Nature structural biology 2002;9(7):553-8.
2002: Deepshikha Datta; Pin Wang; Isaac S Carrico; Stephen L Mayo; David A Tirrell
A designed phenylalanyl-tRNA synthetase variant allows efficient in vivo incorporation of aryl ketone functionality into proteins.
Journal of the American Chemical Society 2002;124(20):5652-3.
2002: Daniel N. Bolon; Chris A Voigt; Stephen L Mayo
De novo design of biocatalysts.
Current opinion in chemical biology 2002;6(2):125-9.
2002: Kirsten S Lassila; Deepshikha Datta; Stephen L Mayo
Evaluation of the energetic contribution of an ionic network to beta-sheet stability.
Protein science : a publication of the Protein Society 2002;11(3):688-90.
2002: Shannon A Marshall; Chantal S Morgan; Stephen L Mayo
Electrostatics significantly affect the stability of designed homeodomain variants.
Journal of molecular biology 2002;316(1):189-99.
2001: Daniel N. Bolon; Stephen L Mayo
Enzyme-like proteins by computational design.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(25):14274-9.
2001: Daniel N. Bolon; Stephen L Mayo
Polar residues in the protein core of Escherichia coli thioredoxin are important for fold specificity.
Biochemistry 2001;40(34):10047-53.
2001: CA Sarisky; Stephen L Mayo
The beta-beta-alpha fold: explorations in sequence space.
Journal of molecular biology 2001;307(5):1411-8.
2001: Chris A Voigt; Stephen L Mayo; Frances H Arnold; Zhen-Gang Wang
Computational method to reduce the search space for directed protein evolution.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(7):3778-83.
2001: S A Ross; CA Sarisky; A Su; Stephen L Mayo
Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification.
Protein science : a publication of the Protein Society 2001;10(2):450-4.
2001: Shannon A Marshall; Stephen L Mayo
Achieving stability and conformational specificity in designed proteins via binary patterning.
Journal of molecular biology 2001;305(3):619-31.
2001: Chris A Voigt; Stephen L Mayo; Frances H Arnold; Zhen-Gang Wang
Computationally focusing the directed evolution of proteins.
Journal of cellular biochemistry. Supplement 2001;Suppl 37():58-63.
2000: Motomu Shimaoka; Julia M Shifman; H Jing; Junichi Takagi; Stephen L Mayo; Timothy A Springer
Computational design of an integrin I domain stabilized in the open high affinity conformation.
Nature structural biology 2000;7(8):674-8.
2000: Pavel Strop; A M Marinescu; Stephen L Mayo
Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design.
Protein science : a publication of the Protein Society 2000;9(7):1391-4.
2000: Chris A Voigt; D Benjamin Gordon; Stephen L Mayo
Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design.
Journal of molecular biology 2000;299(3):789-803.
2000: AG Street; D Datta; D Benjamin Gordon; Stephen L Mayo
Designing protein beta-sheet surfaces by Z-score optimization.
Physical review letters 2000;84(21):5010-3.
2000: Pavel Strop; Stephen L Mayo
Contribution of surface salt bridges to protein stability.
Biochemistry 2000;39(6):1251-5.
1999: D Benjamin Gordon; Stephen L Mayo
Branch-and-terminate: a combinatorial optimization algorithm for protein design.
Structure (London, England : 1993) 1999;7(9):1089-98.
1999: AG Street; Stephen L Mayo
Intrinsic beta-sheet propensities result from van der Waals interactions between side chains and the local backbone.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(16):9074-6.
1999: D Benjamin Gordon; Shannon A Marshall; Stephen L Mayo
Energy functions for protein design.
Current opinion in structural biology 1999;9(4):509-13.
1999: AG Street; Stephen L Mayo
Computational protein design.
Structure (London, England : 1993) 1999;7(5):R105-9.
1998: S M Malakauskas; Stephen L Mayo
Design, structure and stability of a hyperthermophilic protein variant.
Nature structural biology 1998;5(6):470-5.
1998: AG Street; Stephen L Mayo
Pairwise calculation of protein solvent-accessible surface areas.
Folding & design 1998;3(4):253-8.
1997: BI Dahiyat; CA Sarisky; Stephen L Mayo
De novo protein design: towards fully automated sequence selection.
Journal of molecular biology 1997;273(4):789-96.
1997: BI Dahiyat; Stephen L Mayo
De novo protein design: fully automated sequence selection.
Science (New York, N.Y.) 1997;278(5335):82-7.
1997: BI Dahiyat; Stephen L Mayo
Probing the role of packing specificity in protein design.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(19):10172-7.
1997: C S Morgan; J M Holton; B D Olafson; Pamela J Bjorkman; Stephen L Mayo
Circular dichroism determination of class I MHC-peptide equilibrium dissociation constants.
Protein science : a publication of the Protein Society 1997;6(8):1771-3.
1997: A Su; Stephen L Mayo
Coupling backbone flexibility and amino acid sequence selection in protein design.
Protein science : a publication of the Protein Society 1997;6(8):1701-7.
1997: BI Dahiyat; D Benjamin Gordon; Stephen L Mayo
Automated design of the surface positions of protein helices.
Protein science : a publication of the Protein Society 1997;6(6):1333-7.
1996: BI Dahiyat; Stephen L Mayo
Protein design automation.
Protein science : a publication of the Protein Society 1996;5(5):895-903.
1996: A Su; Sela Mager; Stephen L Mayo; Henry A Lester
A multi-substrate single-file model for ion-coupled transporters.
Biophysical journal 1996;70(2):762-77.
1994: H Qian; Stephen L Mayo; A Morton
Protein hydrogen exchange in denaturant: quantitative analysis by a two-process model.
Biochemistry 1994;33(27):8167-71.