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Susan McCouch
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11
Ware, Doreen
9
Stein, Lincoln
9
Jaiswal, Pankaj
7
Cartinhour, Samuel
6
Xu, Yunbi
5
Teytelman, Leonid
5
Thomson, Michael
5
Ni, Junjian
4
Septiningsih, Endang
4
Purugganan, Michael
4
Zhao, Wei
3
Zhang, Qifa
3
Sweeney, Megan
3
Schneider, David
3
Tanksley, Steven
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All Publications
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2009: Kovach Michael J; Calingacion Mariafe N; Fitzgerald Melissa A; McCouch Susan R
The origin and evolution of fragrance in rice (Oryza sativa L.).
Proceedings of the National Academy of Sciences of the United States of America 2009;106(34):14444-9.
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2009: Xu Yunbi; This Dominique; Pausch Roman C; Vonhof Wendy M; Coburn Jason R; Comstock Jonathan P; McCouch Susan R
Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2009;118(6):1065-81.
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2008: Kovach M J; McCouch S R
Leveraging natural diversity: back through the bottleneck.
Current opinion in plant biology 2008;11(2):193-200.
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2008: Xie Xiaobo; Jin Fengxue; Song Mi-Hee; Suh Jung-Pil; Hwang Hung-Goo; Kim Yeon-Gyu; McCouch Susan R; Ahn Sang-Nag
Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2008;116(5):613-22.
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2008: Avraham Shulamit; Tung Chih-Wei; Ilic Katica; Jaiswal Pankaj; Kellogg Elizabeth A; McCouch Susan; Pujar Anuradha; Reiser Leonore; Rhee Seung Y; Sachs Martin M; Schaeffer Mary; Stein Lincoln; Stevens Peter; Vincent Leszek; Zapata Felipe; Ware Doreen
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
Nucleic acids research 2008;36(Database issue):D449-54.
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2008: Liang Chengzhi; Jaiswal Pankaj; Hebbard Claire; Avraham Shuly; Buckler Edward S; Casstevens Terry; Hurwitz Bonnie; McCouch Susan; Ni Junjian; Pujar Anuradha; Ravenscroft Dean; Ren Liya; Spooner William; Tecle Isaak; Thomason Jim; Tung Chih-wei; Wei Xuehong; Yap Immanuel; Youens-Clark Ken; Ware Doreen; Stein Lincoln
Gramene: a growing plant comparative genomics resource.
Nucleic acids research 2008;36(Database issue):D947-53.
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2007: Mather Kristie A; Caicedo Ana L; Polato Nicholas R; Olsen Kenneth M; McCouch Susan; Purugganan Michael D
The extent of linkage disequilibrium in rice (Oryza sativa L.).
Genetics 2007;177(4):2223-32.
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2007: Kovach Michael J; Sweeney Megan T; McCouch Susan R
New insights into the history of rice domestication.
Trends in genetics : TIG 2007;23(11):578-87.
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2007: Sweeney Megan; McCouch Susan
The complex history of the domestication of rice.
Annals of botany 2007;100(5):951-7.
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2007: Caicedo Ana L; Williamson Scott H; Hernandez Ryan D; Boyko Adam; Fledel-Alon Adi; York Thomas L; Polato Nicholas R; Olsen Kenneth M; Nielsen Rasmus; McCouch Susan R; Bustamante Carlos D; Purugganan Michael D
Genome-wide patterns of nucleotide polymorphism in domesticated rice.
PLoS genetics 2007;3(9):1745-56.
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2007: Sweeney Megan T; Thomson Michael J; Cho Yong Gu; Park Yong Jin; Williamson Scott H; Bustamante Carlos D; McCouch Susan R
Global dissemination of a single mutation conferring white pericarp in rice.
PLoS genetics 2007;3(8):e133.
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2007: Iyer-Pascuzzi Anjali S; McCouch Susan R
Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem.
Molecular plant-microbe interactions : MPMI 2007;20(7):731-9.
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2007: Cho Young-Il; Jiang Wenzhu; Chin Joong-Hyoun; Piao Zhongze; Cho Yong-Gu; McCouch Susan; Koh Hee-Jong
Identification of QTLs associated with physiological nitrogen use efficiency in rice.
Molecules and cells 2007;23(1):72-9.
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2007: Ilic Katica; Kellogg Elizabeth A; Jaiswal Pankaj; Zapata Felipe; Stevens Peter F; Vincent Leszek P; Avraham Shulamit; Reiser Leonore; Pujar Anuradha; Sachs Martin M; Whitman Noah T; McCouch Susan R; Schaeffer Mary L; Ware Doreen H; Stein Lincoln D; Rhee Seung Y
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.
Plant physiology 2007;143(2):587-99.
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2007: Thomson Michael J; Septiningsih Endang M; Suwardjo Fatimah; Santoso Tri J; Silitonga Tiur S; McCouch Susan R
Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2007;114(3):559-68.
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2006: Tang Tian; Lu Jian; Huang Jianzi; He Jinghong; McCouch Susan R; Shen Yang; Kai Zeng; Purugganan Michael D; Shi Suhua; Wu Chung-I
Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication.
PLoS genetics 2006;2(11):e199.
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2006: Pujar Anuradha; Jaiswal Pankaj; Kellogg Elizabeth A; Ilic Katica; Vincent Leszek; Avraham Shulamit; Stevens Peter; Zapata Felipe; Reiser Leonore; Rhee Seung Y; Sachs Martin M; Schaeffer Mary; Stein Lincoln; Ware Doreen; McCouch Susan
Whole-plant growth stage ontology for angiosperms and its application in plant biology.
Plant physiology 2006;142(2):414-28.
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2006: Xie Xiaobo; Song Mi-Hee; Jin Fengxue; Ahn Sang-Nag; Suh Jung-Pil; Hwang Hung-Goo; McCouch S R
Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;113(5):885-94.
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2006: Ji Hyeon-So; Chu Sang-Ho; Jiang Wenzhu; Cho Young-Il; Hahn Jang-Ho; Eun Moo-Young; McCouch Susan R; Koh Hee-Jong
Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes.
Genetics 2006;173(2):995-1005.
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2006: Olsen Kenneth M; Caicedo Ana L; Polato Nicholas; McClung Anna; McCouch Susan; Purugganan Michael D
Selection under domestication: evidence for a sweep in the rice waxy genomic region.
Genetics 2006;173(2):975-83.
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2006: Thomson Michael J; Edwards Jeremy D; Septiningsih Endang M; Harrington Sandra E; McCouch Susan R
Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.
Genetics 2006;172(4):2501-14.
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2006: Sweeney Megan T; Thomson Michael J; Pfeil Bernard E; McCouch Susan
Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.
The Plant cell 2006;18(2):283-94.
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2006: Jaiswal Pankaj; Ni Junjian; Yap Immanuel; Ware Doreen; Spooner William; Youens-Clark Ken; Ren Liya; Liang Chengzhi; Zhao Wei; Ratnapu Kiran; Faga Benjamin; Canaran Payan; Fogleman Molly; Hebbard Claire; Avraham Shuly; Schmidt Steven; Casstevens Terry M; Buckler Edward S; Stein Lincoln; McCouch Susan
Gramene: a bird's eye view of cereal genomes.
Nucleic acids research 2006;34(Database issue):D717-23.
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2006: Ammiraju Jetty S S; Luo Meizhong; Goicoechea José L; Wang Wenming; Kudrna Dave; Mueller Christopher; Talag Jayson; Kim HyeRan; Sisneros Nicholas B; Blackmon Barbara; Fang Eric; Tomkins Jeffery B; Brar Darshan; MacKill David; McCouch Susan; Kurata Nori; Lambert Georgina; Galbraith David W; Arumuganathan K; Rao Kiran; Walling Jason G; Gill Navdeep; Yu Yeisoo; SanMiguel Phillip; Soderlund Carol; Jackson Scott; Wing Rod A
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.
Genome research 2006;16(1):140-7.
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2005: Xu Yunbi; McCouch Susan R; Zhang Qifa
How can we use genomics to improve cereals with rice as a reference genome?
Plant molecular biology 2005;59(1):7-26.
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2005: Garris Amanda J; Tai Thomas H; Coburn Jason; Kresovich Steve; McCouch Susan
Genetic structure and diversity in Oryza sativa L.
Genetics 2005;169(3):1631-8.
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2005: Semon Mande; Nielsen Rasmus; Jones Monty P; McCouch Susan R
The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation.
Genetics 2005;169(3):1639-47.
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2005: Jaiswal Pankaj; Avraham Shulamit; Ilic Katica; Kellogg Elizabeth A; McCouch Susan; Pujar Anuradha; Reiser Leonore; Rhee Seung Y; Sachs Martin M; Schaeffer Mary; Stein Lincoln; Stevens Peter; Vincent Leszek; Ware Doreen; Zapata Felipe
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.
Comparative and functional genomics 2005;6(7-8):388-97.
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2004: Li Jiming; Thomson Michael; McCouch Susan R
Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3.
Genetics 2004;168(4):2187-95.
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2004: Iyer Anjali S; McCouch Susan R
The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance.
Molecular plant-microbe interactions : MPMI 2004;17(12):1348-54.
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2004: McCouch Susan
Diversifying selection in plant breeding.
PLoS biology 2004;2(10):e347.
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2004: Jain Sunita; Jain Rajinder K; McCouch Susan R
Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2004;109(5):965-77.
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2004: Li Jiming; Xiao Jinhua; Grandillo Silvana; Jiang Longying; Wan Yizhen; Deng Qiyun; Yuan Longping; McCouch Susan R
QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2004;47(4):697-704.
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2004: Moncada Pilar; McCouch Susan
Simple sequence repeat diversity in diploid and tetraploid Coffea species.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2004;47(3):501-9.
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2004: Edwards J D; Lee V M; McCouch S R
Sources and predictors of resolvable indel polymorphism assessed using rice as a model.
Molecular genetics and genomics : MGG 2004;271(3):298-307.
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2003: Yap Immanuel V; Schneider David; Kleinberg Jon; Matthews David; Cartinhour Samuel; McCouch Susan R
A graph-theoretic approach to comparing and integrating genetic, physical and sequence-based maps.
Genetics 2003;165(4):2235-47.
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2003: Septiningsih E M; Trijatmiko K R; Moeljopawiro S; McCouch S R
Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(8):1433-41.
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2003: Septiningsih E M; Prasetiyono J; Lubis E; Tai T H; Tjubaryat T; Moeljopawiro S; McCouch S R
Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(8):1419-32.
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2003: Garris Amanda J; McCouch Susan R; Kresovich Stephen
Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.).
Genetics 2003;165(2):759-69.
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2003: Thomson M J; Tai T H; McClung A M; Lai X-H; Hinga M E; Lobos K B; Xu Y; Martinez C P; McCouch S R
Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(3):479-93.
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2003: Blair Matthew W; Garris Amanda J; Iyer Anjali S; Chapman Brad; Kresovich Stephen; McCouch Susan R
High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.).
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(1):62-73.
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2003: Jiang Ning; Bao Zhirong; Zhang Xiaoyu; Hirochika Hirohiko; Eddy Sean R; McCouch Susan R; Wessler Susan R
An active DNA transposon family in rice.
Nature 2003;421(6919):163-7.
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2002: McCouch Susan R; Teytelman Leonid; Xu Yunbi; Lobos Katarzyna B; Clare Karen; Walton Mark; Fu Binying; Maghirang Reycel; Li Zhikang; Xing Yongzhong; Zhang Qifa; Kono Izumi; Yano Masahiro; Fjellstrom Robert; DeClerck Genevieve; Schneider David; Cartinhour Samuel; Ware Doreen; Stein Lincoln
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (supplement).
DNA research : an international journal for rapid publication of reports on genes and genomes 2002;9(6):257-79.
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2002: McCouch Susan R; Teytelman Leonid; Xu Yunbi; Lobos Katarzyna B; Clare Karen; Walton Mark; Fu Binying; Maghirang Reycel; Li Zhikang; Xing Yongzhong; Zhang Qifa; Kono Izumi; Yano Masahiro; Fjellstrom Robert; DeClerck Genevieve; Schneider David; Cartinhour Samuel; Ware Doreen; Stein Lincoln
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.).
DNA research : an international journal for rapid publication of reports on genes and genomes 2002;9(6):199-207.
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2002: Ware Doreen H; Jaiswal Pankaj; Ni Junjian; Yap Immanuel V; Pan Xioakang; Clark Ken Y; Teytelman Leonid; Schmidt Steven C; Zhao Wei; Chang Kuan; Cartinhour Sam; Stein Lincoln D; McCouch Susan R
Gramene, a tool for grass genomics.
Plant physiology 2002;130(4):1606-13.
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2002: Chen X; Cho Y G; McCouch S R
Sequence divergence of rice microsatellites in Oryza and other plant species.
Molecular genetics and genomics : MGG 2002;268(3):331-43.
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2002: Jiang Ning; Bao Zhirong; Temnykh Svetlana; Cheng Zhukuan; Jiang Jiming; Wing Rod A; McCouch Susan R; Wessler Susan R
Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice.
Genetics 2002;161(3):1293-305.
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2002: Leach Jan; McCouch Susan; Slezak Tom; Sasaki Takuji; Wessler Sue
Why finishing the rice genome matters.
Science (New York, N.Y.) 2002;296(5565):45.
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2002: Ware Doreen; Jaiswal Pankaj; Ni Junjian; Pan Xiaokang; Chang Kuan; Clark Kenneth; Teytelman Leonid; Schmidt Steve; Zhao Wei; Cartinhour Samuel; McCouch Susan; Stein Lincoln
Gramene: a resource for comparative grass genomics.
Nucleic acids research 2002;30(1):103-5.
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2002: Jaiswal Pankaj; Ware Doreen; Ni Junjian; Chang Kuan; Zhao Wei; Schmidt Steven; Pan Xiaokang; Clark Kenneth; Teytelman Leonid; Cartinhour Samuel; Stein Lincoln; McCouch Susan
Gramene: development and integration of trait and gene ontologies for rice.
Comparative and functional genomics 2002;3(2):132-6.
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2002: Goldberg Debra; McCouch Susan; Kleinberg Jon
Constructing comparative genome maps with unresolved marker order.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():139-50.
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2001: Ishii T; Xu Y; McCouch S R
Nuclear- and chloroplast-microsatellite variation in A-genome species of rice.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2001;44(4):658-66.
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2001: Temnykh S; DeClerck G; Lukashova A; Lipovich L; Cartinhour S; McCouch S
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential.
Genome research 2001;11(8):1441-52.
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2000: Basu D; Dehesh K; Schneider-Poetsch H J; Harrington S E; McCouch S R; Quail P H
Rice PHYC gene: structure, expression, map position and evolution.
Plant molecular biology 2000;44(1):27-42.
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1999: Wilson W A; Harrington S E; Woodman W L; Lee M; Sorrells M E; McCouch S R
Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids.
Genetics 1999;153(1):453-73.
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1998: Xiao J; Li J; Grandillo S; Ahn S N; Yuan L; Tanksley S D; McCouch S R
Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon.
Genetics 1998;150(2):899-909.
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1998: McCouch S
Toward a plant genomics initiative: thoughts on the value of cross-species and cross-genera comparisons in the grasses.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(5):1983-5.
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1997: McCouch S R; Chen X; Panaud O; Temnykh S; Xu Y; Cho Y G; Huang N; Ishii T; Blair M
Microsatellite marker development, mapping and applications in rice genetics and breeding.
Plant molecular biology 1997;35(1-2):89-99.
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1997: Tanksley S D; McCouch S R
Seed banks and molecular maps: unlocking genetic potential from the wild.
Science (New York, N.Y.) 1997;277(5329):1063-6.
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1997: Olufowote J O; Xu Y; Chen X; Park W D; Beachell H M; Dilday R H; Goto M; McCouch S R
Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1997;40(3):370-8.
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1997: Xu Y; Zhu L; Xiao J; Huang N; McCouch S R
Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.).
Molecular & general genetics : MGG 1997;253(5):535-45.
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1996: Panaud O; Chen X; McCouch S R
Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.).
Molecular & general genetics : MGG 1996;252(5):597-607.
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1996: Cho Y G; Blair M W; Panaud O; McCouch S R
Cloning and mapping of variety-specific rice genomic DNA sequences: amplified fragment length polymorphisms (AFLP) from silver-stained polyacrylamide gels.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1996;39(2):373-8.
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1995: Panaud O; Chen X; McCouch S R
Frequency of microsatellite sequences in rice (Oryza sativa L.).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1995;38(6):1170-6.
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1995: McCouch S R; Doerge R W
QTL mapping in rice.
Trends in genetics : TIG 1995;11(12):482-7.
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1995: Van Deynze A E; Nelson J C; O'Donoughue L S; Ahn S N; Siripoonwiwat W; Harrington S E; Yglesias E S; Braga D P; McCouch S R; Sorrells M E
Comparative mapping in grasses. Oat relationships.
Molecular & general genetics : MGG 1995;249(3):349-56.
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1995: Van Deynze A E; Nelson J C; Yglesias E S; Harrington S E; Braga D P; McCouch S R; Sorrells M E
Comparative mapping in grasses. Wheat relationships.
Molecular & general genetics : MGG 1995;248(6):744-54.
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1992: Ronald P C; Albano B; Tabien R; Abenes L; Wu K S; McCouch S; Tanksley S D
Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21.
Molecular & general genetics : MGG 1992;236(1):113-20.
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