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John McDonald

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Publications

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Justyna McIntyre; Mary P McLenigan; Eiji Ohashi; Brian S Plosky; Antonio E Vidal; Martha G Bomar; Elena Curti; John P McDonald; Roger Woodgate
Ubiquitin mediates the physical and functional interaction between human DNA polymerases η and ι.
Ekaterina G Frank; Donald Huston; Kiyonobu Karata; John P McDonald; Roger Woodgate
A strategy for the expression of recombinant proteins traditionally hard to purify.
Wojciech Kuban; John P McDonald; Alexandra Vaisman; Myron F Goodman; Kiyonobu Karata; WEI YANG; Roger Woodgate
Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival.

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All Publications

2013: Justyna McIntyre; Mary P McLenigan; Eiji Ohashi; Brian S Plosky; Antonio E Vidal; Martha G Bomar; Elena Curti; John P McDonald; Roger Woodgate
Ubiquitin mediates the physical and functional interaction between human DNA polymerases η and ι.
Nucleic acids research 2013;41(3):1649-60.
2012: Ekaterina G Frank; Donald Huston; Kiyonobu Karata; John P McDonald; Roger Woodgate
A strategy for the expression of recombinant proteins traditionally hard to purify.
Analytical biochemistry 2012;429(2):132-9.
2012: Wojciech Kuban; John P McDonald; Alexandra Vaisman; Myron F Goodman; Kiyonobu Karata; WEI YANG; Roger Woodgate
Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival.
DNA repair 2012;11(9):726-32.
2012: Alexandra Vaisman; WEI YANG; Myron F Goodman; Kiyonobu Karata; Wojciech Kuban; John P McDonald; Roger Woodgate
Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity.
Nucleic acids research 2012;40(13):6144-57.
2012: John P McDonald; Alexandra Vaisman; Myron F Goodman; Wojciech Kuban; Roger Woodgate
Mechanisms employed by Escherichia coli to prevent ribonucleotide incorporation into genomic DNA by Pol V.
PLoS genetics 2012;8(11):e1003030.
2009: Elena Curti; John P McDonald; Samantha Mead; Roger Woodgate
DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli.
Molecular microbiology 2009;71(2):315-31.
2008: Brian S Plosky; Ekaterina G Frank; David A Berry; Graham P Vennall; John P McDonald; Roger Woodgate
Eukaryotic Y-family polymerases bypass a 3-methyl-2'-deoxyadenosine analog in vitro and methyl methanesulfonate-induced DNA damage in vivo.
Nucleic acids research 2008;36(7):2152-62.
2006: Brian S Plosky; Antonio E Vidal; Antonio R Fernández de Henestrosa; Mary P McLenigan; John P McDonald; Samantha Mead; Roger Woodgate
Controlling the subcellular localization of DNA polymerases iota and eta via interactions with ubiquitin.
The EMBO journal 2006;25(12):2847-55.
2006: John P McDonald; Ashley Hall; Didier Gasparutto; Jean Cadet; Jack Ballantyne; Roger Woodgate
Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs.
Nucleic acids research 2006;34(4):1102-11.
2003: John P McDonald; Ekaterina G Frank; Brian S Plosky; Igor Rogozin; Chikahide Masutani; Fumio Hanaoka; Roger Woodgate; Patricia J Gearhart
129-derived strains of mice are deficient in DNA polymerase iota and have normal immunoglobulin hypermutation.
The Journal of experimental medicine 2003;198(4):635-43.
2002: Alexandra Vaisman; Ekaterina G Frank; John P McDonald; Agnes TISSIER; Roger Woodgate
poliota-dependent lesion bypass in vitro.
Mutation research 2002;510(1-2):9-22.
2001: Ekaterina G Frank; Agnes TISSIER; John P McDonald; V Rapić-Otrin; X Zeng; Patricia J Gearhart; Roger Woodgate
Altered nucleotide misinsertion fidelity associated with poliota-dependent replication at the end of a DNA template.
The EMBO journal 2001;20(11):2914-22.
2001: Agnes TISSIER; Ekaterina G Frank; John P McDonald; Alexandra Vaisman; A R Fernàndez de Henestrosa; François Boudsocq; Mary P McLenigan; Roger Woodgate
Biochemical characterization of human DNA polymerase iota provides clues to its biological function.
Biochemical Society transactions 2001;29(Pt 2):183-7.
2001: Katarzyna Bebenek; Agnes TISSIER; Ekaterina G Frank; John P McDonald; Rajendra Prasad; Samuel H Wilson; Roger Woodgate; Thomas A Kunkel
5'-Deoxyribose phosphate lyase activity of human DNA polymerase iota in vitro.
Science (New York, N.Y.) 2001;291(5511):2156-9.
2001: John P McDonald; Agnes TISSIER; Ekaterina G Frank; Shigenori Iwai; Fumio Hanaoka; Roger Woodgate
DNA polymerase iota and related rad30-like enzymes.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2001;356(1405):53-60.
2000: Agnes TISSIER; Ekaterina G Frank; John P McDonald; Shigenori Iwai; Fumio Hanaoka; Roger Woodgate
Misinsertion and bypass of thymine-thymine dimers by human DNA polymerase iota.
The EMBO journal 2000;19(19):5259-66.
2000: Agnes TISSIER; John P McDonald; Ekaterina G Frank; Roger Woodgate
poliota, a remarkably error-prone human DNA polymerase.
Genes & development 2000;14(13):1642-50.
1999: John P McDonald; V Rapić-Otrin; Jonathan A Epstein; Bernard C Broughton; X Wang; Alan Lehmann; D J Wolgemuth; Roger Woodgate
Novel human and mouse homologs of Saccharomyces cerevisiae DNA polymerase eta.
Genomics 1999;60(1):20-30.
1999: John P McDonald; T S Peat; Arthur S Levine; Roger Woodgate
Intermolecular cleavage by UmuD-like enzymes: identification of residues required for cleavage and substrate specificity.
Journal of molecular biology 1999;285(5):2199-209.
1998: John P McDonald; E E Maury; Arthur S Levine; Roger Woodgate
Regulation of UmuD cleavage: role of the amino-terminal tail.
Journal of molecular biology 1998;282(4):721-30.
1998: Mary P McLenigan; T S Peat; Ekaterina G Frank; John P McDonald; M Gonzalez; Arthur S Levine; W A Hendrickson; Roger Woodgate
Novel Escherichia coli umuD' mutants: structure-function insights into SOS mutagenesis.
Journal of bacteriology 1998;180(17):4658-66.
1998: John P McDonald; Ekaterina G Frank; Arthur S Levine; Roger Woodgate
Intermolecular cleavage by UmuD-like mutagenesis proteins.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(4):1478-83.
1998: M Gonzalez; Ekaterina G Frank; John P McDonald; Arthur S Levine; Roger Woodgate
Structural insights into the regulation of SOS mutagenesis.
Acta biochimica Polonica 1998;45(1):163-72.
1997: John P McDonald; Arthur S Levine; Roger Woodgate
The Saccharomyces cerevisiae RAD30 gene, a homologue of Escherichia coli dinB and umuC, is DNA damage inducible and functions in a novel error-free postreplication repair mechanism.
Genetics 1997;147(4):1557-68.
1996: T S Peat; Ekaterina G Frank; John P McDonald; Arthur S Levine; Roger Woodgate; Wayne A Hendrickson
The UmuD' protein filament and its potential role in damage induced mutagenesis.
Structure (London, England : 1993) 1996;4(12):1401-12.
1996: O I Kulaeva; E V Koonin; John P McDonald; S K Randall; N Rabinovich; J F Connaughton; Arthur S Levine; Roger Woodgate
Identification of a DinB/UmuC homolog in the archeon Sulfolobus solfataricus.
Mutation research 1996;357(1-2):245-53.
1996: T S Peat; Ekaterina G Frank; John P McDonald; Arthur S Levine; Roger Woodgate; Wayne A Hendrickson
Structure of the UmuD' protein and its regulation in response to DNA damage.
Nature 1996;380(6576):727-30.
1994: Serge Gangloff; John P McDonald; Christian Bendixen; L Arthur; Rodney Rothstein
The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase.
Molecular and cellular biology 1994;14(12):8391-8.
1994: John P McDonald; Rodney Rothstein
Unrepaired heteroduplex DNA in Saccharomyces cerevisiae is decreased in RAD1 RAD52-independent recombination.
Genetics 1994;137(2):393-405.