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Hayes McDonald

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TOP 3
Olga M Viquez; Samuel W Caito; David B Friedman; W Hayes McDonald; William M Valentine
Electrophilic adduction of ubiquitin activating enzyme E1 by N,N-diethyldithiocarbamate inhibits ubiquitin activation and is accompanied by striatal injury in the rat.
Yamei Wang; John R Yates; Anna Feoktistova; Kathleen L Gould; Alyssa E Johnson; Wen-zhu Li; Zhou-qing Luo; Dannel McCollum; W Hayes McDonald; Ian McLeod; Xue-li Sun; Quan-Wen Jin
Dnt1 acts as a mitotic inhibitor of the spindle checkpoint protein dma1 in fission yeast.
Suguru Kurokawa; W Hayes McDonald; Kristina E Hill; Raymond F Burk
Long isoform mouse selenoprotein P (Sepp1) supplies rat myoblast L8 cells with selenium via endocytosis mediated by heparin binding properties and apolipoprotein E receptor-2 (ApoER2).

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2012: Olga M Viquez; Samuel W Caito; David B Friedman; W Hayes McDonald; William M Valentine
Electrophilic adduction of ubiquitin activating enzyme E1 by N,N-diethyldithiocarbamate inhibits ubiquitin activation and is accompanied by striatal injury in the rat.
Chemical research in toxicology 2012;25(11):2310-21.
2012: Yamei Wang; John R Yates; Anna Feoktistova; Kathleen L Gould; Alyssa E Johnson; Wen-zhu Li; Zhou-qing Luo; Dannel McCollum; W Hayes McDonald; Ian McLeod; Xue-li Sun; Quan-Wen Jin
Dnt1 acts as a mitotic inhibitor of the spindle checkpoint protein dma1 in fission yeast.
Molecular biology of the cell 2012;23(17):3348-56.
2012: Suguru Kurokawa; W Hayes McDonald; Kristina E Hill; Raymond F Burk
Long isoform mouse selenoprotein P (Sepp1) supplies rat myoblast L8 cells with selenium via endocytosis mediated by heparin binding properties and apolipoprotein E receptor-2 (ApoER2).
The Journal of biological chemistry 2012;287(34):28717-26.
2012: John G Gibbons; Jonas G King; Maren A Klich; W Hayes McDonald; Kriston L McGary; David C Rinker; Leonidas Salichos; Jason C Slot; David L Tabb; Antonis Rokas
The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.
Current biology : CB 2012;22(15):1403-9.
2012: Melissa N Martinez; W Hayes McDonald; Matthew Overton; Tara S Ramaswamy; David A Cappel; Christopher H Emfinger; Sergio Fazio; David L Hachey; Salisha Hill; David L Tabb; Ke Wu; John M Stafford
Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones.
Journal of lipid research 2012;53(3):379-89.
2011: Carrie L Shaffer; Jennifer A Gaddy; Ewa E Hennig; Salisha Hill; Elizabeth M Johnson; John T Loh; Mark McClain; W Hayes McDonald; Timothy L Cover
Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface.
PLoS pathogens 2011;7(9):e1002237.
2011: Sergei Chetyrkin; David L Hachey; Billy Hudson; Hartman Madu; Missy Mathis; W Hayes McDonald; Vadim Pedchenko; Otto A Sanchez; Donald Stec; Paul A Voziyan
Glucose autoxidation induces functional damage to proteins via modification of critical arginine residues.
Biochemistry 2011;50(27):6102-12.
2011: Timothy D Panosian; David P Nannemann; Guy R Watkins; Vanessa V Phelan; W Hayes McDonald; Brian E Wadzinski; Brian O Bachmann; Thomas Tomasiak
Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle.
The Journal of biological chemistry 2011;286(10):8043-54.
2011: Thomas M Tomasiak; Tara L Archuleta; Juni Andréll; César Luna-Chávez; Tyler A Davis; Maruf Sarwar; Amy J Ham; W Hayes McDonald; Victoria Yankovskaya; Harry A Stern; Jeffrey N Johnston; Elena Maklashina; Gary Cecchini; Thomas Tomasiak
Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase.
The Journal of biological chemistry 2011;286(4):3047-56.
2011: Angela M Boutté; W Hayes McDonald; Yu Shyr; Li Yang; P Charles Lin
Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics.
PloS one 2011;6(8):e22446.
2010: Rachel H Roberts-Galbraith; Melanie D Ohi; Bryan A Ballif; Jun-Song Chen; Ian McLeod; W Hayes McDonald; Steven P Gygi; John R Yates; Kathleen L Gould
Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site.
Molecular cell 2010;39(1):86-99.
2010: Victor J Torres; Ahmed Attia; William J Mason; M Indriati Hood; Brian D Corbin; Federico C Beasley; Kelsi L Anderson; Devin L Stauff; W Hayes McDonald; Lisa J Zimmerman; David B Friedman; David E Heinrichs; Paul Dunman; Eric P Skaar
Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia.
Infection and immunity 2010;78(4):1618-28.
2010: Chongle Pan; Byung H Park; W Hayes McDonald; Patricia A Carey; Jillian F Banfield; Nathan C VerBerkmoes; Robert L Hettich; Nagiza F Samatova
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
BMC bioinformatics 2010;11():118.
2009: Markus Voehler; Robert L Eoff; W Hayes McDonald; F Peter Guengerich; Michael P Stone
Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.
The Journal of biological chemistry 2009;284(27):18434-44.
2009: W Judson Hervey; Gurusahai Khalsa-Moyers; Patricia K Lankford; Elizabeth T Owens; Catherine K McKeown; Tse-Yuan Lu; Linda J Foote; Keiji G Asano; Jennifer Morrell-Falvey; W Hayes McDonald; Dale A Pelletier; Gregory B Hurst
Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements.
Journal of proteome research 2009;8(7):3675-88.
2009: Ronald C Taylor; Mudita Singhal; Don S Daly; Jason Gilmore; William R Cannon; Kelly Domico; Amanda M White; Deanna L Auberry; Kenneth J Auberry; Brian S Hooker; Greg Hurst; Jason E McDermott; W Hayes McDonald; Dale A Pelletier; Denise Schmoyer; H Steven Wiley
An analysis pipeline for the inference of protein-protein interaction networks.
International journal of data mining and bioinformatics 2009;3(4):409-30.
2008: Dale A Pelletier; Gregory B Hurst; Linda J Foote; Patricia K Lankford; Catherine K McKeown; Tse-Yuan Lu; Denise D Schmoyer; Manesh B Shah; W Judson Hervey; W Hayes McDonald; Brian S Hooker; William R Cannon; Don S Daly; Jason M Gilmore; H Steven Wiley; Deanna L Auberry; Yisong Wang; Frank W Larimer; Stephen J Kennel; Mitchel J Doktycz; Jennifer Morrell-Falvey; Elizabeth T Owens; Michelle V Buchanan
A general system for studying protein-protein interactions in Gram-negative bacteria.
Journal of proteome research 2008;7(8):3319-28.
2008: Alon Savidor; Ryan S Donahoo; Oscar Hurtado-Gonzales; Miriam L Land; Manesh B Shah; Kurt H Lamour; W Hayes McDonald
Cross-species global proteomics reveals conserved and unique processes in Phytophthora sojae and Phytophthora ramorum.
Molecular & cellular proteomics : MCP 2008;7(8):1501-16.
2008: Dawn M Clifford; Benjamin A. Wolfe; Rachel H Roberts-Galbraith; W Hayes McDonald; John R Yates; Kathleen L Gould
The Clp1/Cdc14 phosphatase contributes to the robustness of cytokinesis by association with anillin-related Mid1.
The Journal of cell biology 2008;181(1):79-88.
2008: Mabelle Ashe; Robertus A M de Bruin; Tatyana Kalashnikova; W Hayes McDonald; John R Yates; Curt Wittenberg
The SBF- and MBF-associated protein Msa1 is required for proper timing of G1-specific transcription in Saccharomyces cerevisiae.
The Journal of biological chemistry 2008;283(10):6040-9.
2007: Richard J Giannone; W Hayes McDonald; Gregory B Hurst; Ying Huang; Jun Wu; Yie Liu; Yisong Wang
Dual-tagging system for the affinity purification of mammalian protein complexes.
BioTechniques 2007;43(3):296, 298, 300 passim.
2007: Julia Lynn Sharp; Kevin K Anderson; Gregory B Hurst; Don S Daly; Dale A Pelletier; William R Cannon; Deanna L Auberry; Denise D Schmoyer; W Hayes McDonald; Amanda M White; Brian S Hooker; Kristin D Victry; Michelle V Buchanan; Vladimir Kery; H Steven Wiley
Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.
Journal of proteome research 2007;6(9):3788-95.
2006: Alon Savidor; Ryan S Donahoo; Oscar Hurtado-Gonzales; Nathan C VerBerkmoes; Manesh B Shah; Kurt H Lamour; W Hayes McDonald
Expressed peptide tags: an additional layer of data for genome annotation.
Journal of proteome research 2006;5(11):3048-58.
2006: Kristina Herzberg; Vladimir I Bashkirov; Michael Rolfsmeier; Edwin Haghnazari; W Hayes McDonald; Scott Anderson; Elena V Bashkirova; John R Yates; Wolf-Dietrich Heyer
Phosphorylation of Rad55 on serines 2, 8, and 14 is required for efficient homologous recombination in the recovery of stalled replication forks.
Molecular and cellular biology 2006;26(22):8396-409.
2006: Chongle Pan; Guruprasad Kora; W Hayes McDonald; David L Tabb; Nathan C VerBerkmoes; Gregory B Hurst; Dale A Pelletier; Nagiza F Samatova; Robert L Hettich
ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.
Analytical chemistry 2006;78(20):7121-31.
2006: Chongle Pan; Guruprasad Kora; David L Tabb; Dale A Pelletier; W Hayes McDonald; Gregory B Hurst; Robert L Hettich; Nagiza F Samatova
Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.
Analytical chemistry 2006;78(20):7110-20.
2006: Benjamin A. Wolfe; W Hayes McDonald; John R Yates; Kathleen L Gould
Phospho-regulation of the Cdc14/Clp1 phosphatase delays late mitotic events in S. pombe.
Developmental cell 2006;11(3):423-30.
2006: Joshua A Rosenberg; Gregory C Tomlin; W Hayes McDonald; Brian E Snydsman; Eric G D Muller; John R Yates; Kathleen L Gould
Ppc89 links multiple proteins, including the septation initiation network, to the core of the fission yeast spindle-pole body.
Molecular biology of the cell 2006;17(9):3793-805.
2006: Jennifer R Schultz-Norton; W Hayes McDonald; John R Yates; Carol Curtis
Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor alpha structure and function.
Molecular endocrinology (Baltimore, Md.) 2006;20(9):1982-95.
2006: Robertus A M de Bruin; Tatyana I Kalashnikova; Charly Chahwan; W Hayes McDonald; James Wohlschlegel; John Yates; Paul Russell; Curt Wittenberg
Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.
Molecular cell 2006;23(4):483-96.
2006: Gurusahai Khalsa-Moyers; W Hayes McDonald
Developments in mass spectrometry for the analysis of complex protein mixtures.
Briefings in functional genomics & proteomics 2006;5(2):98-111.
2006: Stephanie Pebernard; James Wohlschlegel; W Hayes McDonald; John R Yates; Michael N Boddy
The Nse5-Nse6 dimer mediates DNA repair roles of the Smc5-Smc6 complex.
Molecular and cellular biology 2006;26(5):1617-30.
2006: Victoria Martín; Miguel A Rodríguez-Gabriel; W Hayes McDonald; Stephen Watt; John R Yates; Jürg Bähler; Miguel Rodriguez-Gabriel
Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.
Molecular biology of the cell 2006;17(3):1176-83.
2006: Nathan C VerBerkmoes; Manesh B Shah; Patricia K Lankford; Dale A Pelletier; Michael Brad Strader; David L Tabb; W Hayes McDonald; John W Barton; Gregory B Hurst; Loren Hauser; Brian H Davison; J Thomas Beatty; Caroline S Harwood; F Robert Tabita; Robert L Hettich; Frank W Larimer
Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states.
Journal of proteome research 2006;5(2):287-98.
2006: Sébastien Léon; Lan Zhang; W Hayes McDonald; John Yates; James M Cregg; Suresh Subramani
Dynamics of the peroxisomal import cycle of PpPex20p: ubiquitin-dependent localization and regulation.
The Journal of cell biology 2006;172(1):67-78.
2005: David L Tabb; Melissa R Thompson; Gurusahai Khalsa-Moyers; Nathan C VerBerkmoes; W Hayes McDonald
MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.
Journal of the American Society for Mass Spectrometry 2005;16(8):1250-61.
2005: Liping Ren; Anna Feoktistova; W Hayes McDonald; Greg Den Haese; Jennifer L Morrell; Kathleen L Gould
Analysis of the role of phosphorylation in fission yeast Cdc13p/cyclinB function.
The Journal of biological chemistry 2005;280(15):14591-6.
2005: Sophie G Martin; W Hayes McDonald; John R Yates; Fred Chang
Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity.
Developmental cell 2005;8(4):479-91.
2004: Stephanie Pebernard; W Hayes McDonald; Yelena Pavlova; John R Yates; Michael N Boddy
Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis.
Molecular biology of the cell 2004;15(11):4866-76.
2004: Eishi Noguchi; Chiaki Noguchi; W Hayes McDonald; John R Yates; Paul Russell
Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.
Molecular and cellular biology 2004;24(19):8342-55.
2004: Nadim Jessani; Mark Humphrey; W Hayes McDonald; Sherry Niessen; Kim Masuda; Beena Gangadharan; John R Yates; Barbara M Mueller; Benjamin F Cravatt
Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(38):13756-61.
2004: Marshall Bern; David Goldberg; W Hayes McDonald; John R Yates
Automatic quality assessment of peptide tandem mass spectra.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i49-54.
2004: Karin Flick; Ikram Ouni; James Wohlschlegel; Chrissy Capati; W Hayes McDonald; John R Yates; Peter Kaiser
Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain.
Nature cell biology 2004;6(7):634-41.
2004: Robertus A M de Bruin; W Hayes McDonald; Tatyana I Kalashnikova; John Yates; Curt Wittenberg
Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.
Cell 2004;117(7):887-98.
2004: Tapio Kesti; W Hayes McDonald; John R Yates; Curt Wittenberg
Cell cycle-dependent phosphorylation of the DNA polymerase epsilon subunit, Dpb2, by the Cdc28 cyclin-dependent protein kinase.
The Journal of biological chemistry 2004;279(14):14245-55.
2004: Johannes Graumann; Leslie A Dunipace; Jae Hong Seol; W Hayes McDonald; John R Yates; Barbara J Wold; Raymond J Deshaies
Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast.
Molecular & cellular proteomics : MCP 2004;3(3):226-37.
2004: W Hayes McDonald; David L Tabb; Rovshan G Sadygov; Michael J MacCoss; John D Venable; Johannes Graumann; Jeff R Johnson; Daniel Cociorva; John R Yates
MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.
Rapid communications in mass spectrometry : RCM 2004;18(18):2162-8.
2004: Stéphane Coulon; Pierre-Henri L Gaillard; Charly Chahwan; W Hayes McDonald; John R Yates; Paul Russell
Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.
Molecular biology of the cell 2004;15(1):71-80.
2003: Tony R Hazbun; Lars Malmström; Scott Anderson; Beth J Graczyk; Bethany Fox; Michael Riffle; Bryan A Sundin; J Derringer Aranda; W Hayes McDonald; Chun-Hwei Chiu; Brian E Snydsman; Philip Bradley; Eric G D Muller; Stanley Fields; David Baker; John R Yates; Trisha Davis
Assigning function to yeast proteins by integration of technologies.
Molecular cell 2003;12(6):1353-65.
2003: Miguel A Rodríguez-Gabriel; Gavin Burns; W Hayes McDonald; Victoria Martín; John R Yates; Jürg Bähler; Miguel Rodriguez-Gabriel
RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress.
The EMBO journal 2003;22(23):6256-66.
2003: W Hayes McDonald; Yelena Pavlova; John R Yates; Michael N Boddy
Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex.
The Journal of biological chemistry 2003;278(46):45460-7.
2003: Kenichi Yamaguchi; María Verónica Beligni; Susana Prieto; Paul A Haynes; W Hayes McDonald; John R Yates; Stephen P Mayfield
Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.
The Journal of biological chemistry 2003;278(36):33774-85.
2003: Michael N Boddy; Paul Shanahan; W Hayes McDonald; Antonia Lopez-Girona; Eishi Noguchi; John R Yates III; Paul Russell
Replication checkpoint kinase Cds1 regulates recombinational repair protein Rad60.
Molecular and cellular biology 2003;23(16):5939-46.
2003: W Hayes McDonald; John R Yates
Shotgun proteomics: integrating technologies to answer biological questions.
Current opinion in molecular therapeutics 2003;5(3):302-9.
2002: Kenichi Yamaguchi; Susana Prieto; María Verónica Beligni; Paul A Haynes; W Hayes McDonald; John R Yates; Stephen P Mayfield
Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5.
The Plant cell 2002;14(11):2957-74.
2002: Rati Verma; L Aravind; Robert Oania; W Hayes McDonald; John R Yates; Eugene V Koonin; Raymond J Deshaies
Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome.
Science (New York, N.Y.) 2002;298(5593):611-5.
2002: Michael J MacCoss; W Hayes McDonald; Anita Saraf; Rovshan G Sadygov; Judy M Clark; Joseph J Tasto; Kathleen L Gould; Dirk Wolters; Michael Washburn; Avery Weiss; John I Clark; John R Yates
Shotgun identification of protein modifications from protein complexes and lens tissue.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):7900-5.
2002: Shigeaki Saitoh; Andrei Chabes; W Hayes McDonald; Lars Thelander; John R Yates; Paul Russell
Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.
Cell 2002;109(5):563-73.
2002: Melanie D Ohi; Andrew J Link; Liping Ren; Jennifer L Jennings; W Hayes McDonald; Kathleen L Gould
Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.
Molecular and cellular biology 2002;22(7):2011-24.
2002: David L Tabb; W Hayes McDonald; John R Yates
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics.
Journal of proteome research 2002;1(1):21-6.
2002: W Hayes McDonald; John R Yates
Shotgun proteomics and biomarker discovery.
Disease markers 2002;18(2):99-105.
2002: Raymond J Deshaies; Jae Hong Seol; W Hayes McDonald; Gregory A Cope; Svetlana Lyapina; Andrej Shevchenko; Anna Shevchenko; Rati Verma; John R Yates
Charting the protein complexome in yeast by mass spectrometry.
Molecular & cellular proteomics : MCP 2002;1(1):3-10.
2001: Michael N Boddy; Pierre-Henri L Gaillard; W Hayes McDonald; Paul Shanahan; John R Yates; Paul Russell
Mus81-Eme1 are essential components of a Holliday junction resolvase.
Cell 2001;107(4):537-48.
2001: Joseph J Tasto; Robert H Carnahan; W Hayes McDonald; Kathleen L Gould
Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe.
Yeast (Chichester, England) 2001;18(7):657-62.
2000: W Hayes McDonald; John R Yates
Proteomic tools for cell biology.
Traffic (Copenhagen, Denmark) 2000;1(10):747-54.
1999: W Hayes McDonald; Ryoma Ohi; N Smelkova; D Frendewey; Kathleen L Gould
Myb-related fission yeast cdc5p is a component of a 40S snRNP-containing complex and is essential for pre-mRNA splicing.
Molecular and cellular biology 1999;19(8):5352-62.