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Claudine Médigue

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Eugeni Belda; François Le Fèvre; Claudine Médigue; Anne Morgat; Damien Mornico; Christos Ouzounis; Agnieszka Sekowska; David Vallenet; Antoine Danchin
An updated metabolic view of the Bacillus subtilis 168 genome.
K Dimitri Kits; Martin Klotz; Aurélie Lajus; M L Land; Alla Lapidus; S Lucas; Claudine Médigue; J Colin Murrell; Huub J M Op den Camp; S Pitluck; Françoise Bringel; D Bruce; Jan-Fang Cheng; A Copeland; Alan A DiSpirito; Lynne Goodwin; Loren Hauser; Mike S M Jetten; Marina G Kalyuzhnaya; Stéphane Vuilleumier; Tanja Woyke; Ahmet Zeytun; Lisa Y Stein
Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.
Sébastien Wielgoss; Michael J Wiser; Olivier Tenaillon; Jeffrey E Barrick; Béatrice Chane-Woon-Ming; Stéphane Cruveiller; W James Dittmar; Richard E Lenski; Claudine Médigue; Dominique Schneider
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.

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2013: Eugeni Belda; François Le Fèvre; Claudine Médigue; Anne Morgat; Damien Mornico; Christos Ouzounis; Agnieszka Sekowska; David Vallenet; Antoine Danchin
An updated metabolic view of the Bacillus subtilis 168 genome.
Microbiology (Reading, England) 2013;159(Pt 4):757-70.
2013: K Dimitri Kits; Martin Klotz; Aurélie Lajus; M L Land; Alla Lapidus; S Lucas; Claudine Médigue; J Colin Murrell; Huub J M Op den Camp; S Pitluck; Françoise Bringel; D Bruce; Jan-Fang Cheng; A Copeland; Alan A DiSpirito; Lynne Goodwin; Loren Hauser; Mike S M Jetten; Marina G Kalyuzhnaya; Stéphane Vuilleumier; Tanja Woyke; Ahmet Zeytun; Lisa Y Stein
Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.
Genome announcements 2013;1(2):e0017013.
2013: Sébastien Wielgoss; Michael J Wiser; Olivier Tenaillon; Jeffrey E Barrick; Béatrice Chane-Woon-Ming; Stéphane Cruveiller; W James Dittmar; Richard E Lenski; Claudine Médigue; Dominique Schneider
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(1):222-7.
2013: Jérémy Andres; Florence Arsène-Ploetze; Valérie Barbe; Céline Brochier-Armanet; Jessica Cleiss-Arnold; Jean-Yves Coppée; Marie-Agnès Dillies; Lucie Geist; Aurélie Joublin; Sandrine Koechler; Florent Lassalle; Marie Marchal; Claudine Médigue; Daniel Muller; Xavier Nesme; Frédéric Plewniak; Caroline Proux; Martha Helena Ramírez-Bahena; Joanne M Santini; Chantal Schenowitz; Odile Sismeiro; David Vallenet; Philippe N Bertin
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.
Genome biology and evolution 2013;5(5):934-53.
2013: Oulfat Amin; Valérie Barbe; Philippe N Bertin; Marie-Laure Fardeau; Agnès Hirschler-Réa; Claudine Médigue; Bernard Ollivier; Benoit Vacherie; Odile Valette; Alain Dolla
Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5(T).
Genome announcements 2013;1(1):.
2013: David Vallenet; Marion Weiman; Damien Mornico; David Roche; Zoé Rouy; Gregory Salvignol; Claude Scarpelli; Adam Alexander Thil Smith; Eugeni Belda; Alexandra Calteau; Stéphane Cruveiller; Stefan Engelen; Aurélie Lajus; François Le Fèvre; Cyrille Longin; Claudine Médigue
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
Nucleic acids research 2013;41(Database issue):D636-47.
2012: Philippe Normand; Imen Nouioui; Petar Pujic; Benoit Vacherie; Jérôme Gury; Claudine Médigue; Ines Abbassi-Ghozzi; Valérie Barbe; Lorenzo Brusetti; Alexandra Calteau; Bessem Chouaia; Elena Crotti; Daniele Daffonchio; Imen Essoussi; Faten Ghodhbane-Gtari; Maher Gtari
Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces.
Journal of bacteriology 2012;194(17):4773-4.
2012: Christopher J Marx; Claudine Médigue; Natalia Mikhailova; Lionel Moulin; Emilie E L Muller; Thierry Nadalig; Matt Nolan; Rémi Peyraud; Sandro Roselli; Lina Russ; Sergey Stolyar; Julia A Vorholt; Françoise Bringel; Ludmila Chistoserdova; Muhammad Farhan Ul Haque; Darrell E Fleischman; Lynne A Goodwin; Christelle Gruffaz; Natalia Ivanova; Philippe Jourand; Claudia Knief; Nikos Kyrpides; Aurélie Lajus; Miriam L Land; Ming-Chun Lee; Tanja Woyke; Stéphane Vuilleumier
Complete genome sequences of six strains of the genus Methylobacterium.
Journal of bacteriology 2012;194(17):4746-8.
2012: Ahmad Fouad Khadem; Martin Klotz; Aurélie Lajus; Claudine Médigue; J Colin Murrell; Alan A DiSpirito; Peter F Dunfield; Kees-Jan Francoijs; Harry R Harhangi; Mike S.M. Jetten; Marina G Kalyuzhnaya; Arjan Pol; Jeremy D Semrau; Lisa Y Stein; Henk G Stunnenberg; Stéphane Vuilleumier; Adam S Wieczorek; Huub J M Op den Camp
Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.
Journal of bacteriology 2012;194(14):3729-30.
2012: K Duquesne; B Ji; Claudine Médigue; Valérie Prima; Zoé Rouy; E Talla; James N Sturgis
Draft genome sequence of the purple photosynthetic bacterium Phaeospirillum molischianum DSM120, a particularly versatile bacterium.
Journal of bacteriology 2012;194(13):3559-60.
2012: Bessem Chouaia; Elena Crotti; Daniele Daffonchio; Imen Essoussi; Faten Ghodhbane-Gtari; Maher Gtari; Jerome Gury; Claudine Médigue; Imen Nouioui; Petar Pujic; Imed Sbissi; Benoit Vacherie; Valérie Barbe; Lorenzo Brusetti; Philippe Normand
Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium.
Journal of bacteriology 2012;194(10):2752-3.
2012: Benoît Remenant; Lavanya Babujee; Aurélie Lajus; Claudine Médigue; Philippe Prior; Caitilyn Allen
Sequencing of K60, type strain of the major plant pathogen Ralstonia solanacearum.
Journal of bacteriology 2012;194(10):2742-3.
2012: Pierre-Edouard Fournier; Claudine Médigue; Khalid El Karkouri; Catherine Robert; Didier Raoult
Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis.
Journal of bacteriology 2012;194(6):1612.
2012: Stefan Engelen; Claudine Médigue; David Vallenet; Antoine Danchin
Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.
BMC genomics 2012;13():69.
2011: Mette M Svenning; Stéphane Vuilleumier; Ingvild Wartiainen; Françoise Bringel; David Bruce; Jan-Fang Cheng; Lynne Goodwin; Cliff S Han; James Han; Loren Hauser; Brittany Held; Anne Grethe Hestnes; Natalia Ivanova; Marina G Kalyuzhnaya; Martin Klotz; Aurélie Lajus; Miriam L Land; Alla Lapidus; Susan Lucas; Claudine Médigue; Matt Nolan; Sam Pitluck; Anja Spang; Lisa Y Stein; Tanja Woyke
Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.
Journal of bacteriology 2011;193(22):6418-9.
2011: Philippe N Bertin; Violaine Bonnefoy; Odile Bruneel; Alexandra Calteau; Corinne Casiot; Béatrice Chane-Woon-Ming; Jessica Cleiss-Arnold; Robert Duran; Françoise Elbaz-Poulichet; Nuria Fonknechten; Sébastien Gallien; Ludovic Giloteaux; Florence Goulhen-Chollet; David Halter; Audrey Heinrich-Salmeron; Sandrine Koechler; Béatrice Lauga; Marie Marchal; Claudine Médigue; Damien Mornico; Eric Pelletier; Christine Schaeffer; Adam Alexander Thil Smith; David Vallenet; Alain Van Dorsselaer; Jean Weissenbach; Florence Arsène-Ploetze; Denis Le Paslier
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics.
The ISME journal 2011;5(11):1735-47.
2011: Stéphane Vuilleumier; Muhammad Farhan Ul Haque; Valérie Barbe; Christelle Gruffaz; Aurélie Lajus; Ghislaine Magdelenat; Claudine Médigue; Emilie E L Muller; Thierry Nadalig; Sandro Roselli; Françoise Bringel
Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.
Journal of bacteriology 2011;193(18):5035-6.
2011: Weerayuth Kittichotirat; Aurélie Lajus; Claudine Médigue; Nicole E Smalley; Stéphane Vuilleumier; David Beck; Françoise Bringel; Roger Bumgarner; Nathan M Good; Rob Hall; Marina G Kalyuzhnaya
Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.
Journal of bacteriology 2011;193(17):4541-2.
2011: Lisa Y Stein; Françoise Bringel; Alan A DiSpirito; Sukkyun Han; Mike S.M. Jetten; Marina G Kalyuzhnaya; K Dimitri Kits; Martin G Klotz; Huub J M Op den Camp; Jeremy D Semrau; Stéphane Vuilleumier; David C Bruce; Jan-Fang Cheng; Karen W Davenport; Lynne Goodwin; Shunsheng Han; Loren Hauser; Aurélie Lajus; Miriam L Land; Alla Lapidus; Susan Lucas; Claudine Médigue; Sam Pitluck; Tanja Woyke
Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).
Journal of bacteriology 2011;193(10):2668-9.
2011: Gilles Vieira; Victor Sabarly; Pierre-Yves Bourguignon; Maxime Durot; Francois Le Fèvre; Damien Mornico; David Vallenet; Odile Bouvet; Erick Denamur; Vincent Schachter; Claudine Médigue
Core and panmetabolism in Escherichia coli.
Journal of bacteriology 2011;193(6):1461-72.
2011: Typhaine Billard-Pomares; Olivier Tenaillon; Hervé Le Nagard; Zoé Rouy; Stéphane Cruveiller; Claudine Médigue; Guillaume Arlet; Erick Denamur; Catherine Branger
Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain.
Antimicrobial agents and chemotherapy 2011;55(3):1270-3.
2011: Philipp Engel; Walter Salzburger; Marius Liesch; Chao-Chin Chang; Soichi Maruyama; Christa Lanz; Alexandra Calteau; Aurélie Lajus; Claudine Médigue; Stephan C Schuster; Christoph Dehio
Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella.
PLoS genetics 2011;7(2):e1001296.
2010: Lisa Y Stein; Sukhwan Yoon; Jeremy D Semrau; Alan A DiSpirito; Andrew Crombie; J Colin Murrell; Stéphane Vuilleumier; Marina G Kalyuzhnaya; Huub J M Op den Camp; Françoise Bringel; D Bruce; J-F Cheng; A Copeland; Lynne Goodwin; Shunsheng Han; Loren Hauser; Mike S.M. Jetten; Aurélie Lajus; M L Land; Alla Lapidus; S Lucas; Claudine Médigue; S Pitluck; Tanja Woyke; Ahmet Zeytun; Martin G Klotz
Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b.
Journal of bacteriology 2010;192(24):6497-8.
2010: Annick Méjean; Rabia Mazmouz; Stéphane Mann; Alexandra Calteau; Claudine Médigue; Olivier Ploux
The genome sequence of the cyanobacterium Oscillatoria sp. PCC 6506 reveals several gene clusters responsible for the biosynthesis of toxins and secondary metabolites.
Journal of bacteriology 2010;192(19):5264-5.
2010: Anne Derbise; Viviane Chenal-Francisque; Christèle Huon; Catherine Fayolle; Christian E Demeure; Béatrice Chane-Woon-Ming; Claudine Médigue; B Joseph Hinnebusch; Elisabeth Carniel
Delineation and analysis of chromosomal regions specifying Yersinia pestis.
Infection and immunity 2010;78(9):3930-41.
2010: Yassina Bechah; Khalid El Karkouri; Oleg Mediannikov; Quentin Leroy; Nicolas Pelletier; Catherine Robert; Claudine Médigue; Jean-Louis Mege; Didier Raoult
Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities.
Genome research 2010;20(5):655-63.
2010: Nicole Alloisio; Clothilde Queiroux; Pascale Fournier; Petar Pujic; Philippe Normand; David Vallenet; Claudine Médigue; Masatoshi Yamaura; Kentaro Kakoi; Ken-ichi Kucho
The Frankia alni symbiotic transcriptome.
Molecular plant-microbe interactions : MPMI 2010;23(5):593-607.
2010: Jean-Claude Ogier; Alexandra Calteau; Steve Forst; Heidi Goodrich-Blair; David Roche; Zoé Rouy; Garret Suen; Robert Zumbihl; Alain Givaudan; Patrick Tailliez; Claudine Médigue; Sophie Gaudriault
Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus.
BMC genomics 2010;11():568.
2010: Benoît Remenant; Bénédicte Coupat-Goutaland; Alice Guidot; Gilles Cellier; Emmanuel Wicker; Caitilyn Allen; Mark Fegan; Olivier Pruvost; Mounira Elbaz; Alexandra Calteau; Gregory Salvignol; Damien Mornico; Sophie Mangenot; Valérie Barbe; Claudine Médigue; Philippe Prior
Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence.
BMC genomics 2010;11():379.
2010: Jean-Michel Thiberge; Caroline Boursaux-Eude; Philippe Lehours; Marie-Agnès Dillies; Sophie Creno; Jean-Yves Coppée; Zoé Rouy; Aurélie Lajus; Laurence Ma; Christophe Burucoa; Anne Ruskoné-Foumestraux; Anne Courillon-Mallet; Hilde De Reuse; Ivo G Boneca; Dominique Lamarque; Francis Mégraud; Jean-Charles Delchier; Claudine Médigue; Christiane Bouchier; Agnès Labigne; Josette Raymond
From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.
BMC genomics 2010;11():368.
2010: Paul J Janssen; Rob Van Houdt; Hugo Moors; Pieter Monsieurs; Nicolas Morin; Arlette Michaux; Mohammed A Benotmane; Natalie Leys; Tatiana Vallaeys; Alla Lapidus; Sébastien Monchy; Claudine Médigue; Safiyh Taghavi; Sean McCorkle; John Dunn; Daniël van der Lelie; Max Mergeay
The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.
PloS one 2010;5(5):e10433.
2010: Fabrice Touzain; Erick Denamur; Claudine Médigue; Valérie Barbe; Meriem El-Karoui; Marie-Agnès Petit
Small variable segments constitute a major type of diversity of bacterial genomes at the species level.
Genome biology 2010;11(4):R45.
2010: Marta Marchetti; Delphine Capela; Michelle Glew; Stéphane Cruveiller; Béatrice Chane-Woon-Ming; Carine Gris; Ton Timmers; Véréna Poinsot; Luz B Gilbert; Philipp Heeb; Claudine Médigue; Jacques Batut; Catherine Masson-Boivin
Experimental evolution of a plant pathogen into a legume symbiont.
PLoS biology 2010;8(1):e1000280.
2009: Frédérique Le Roux; Mohamed Zouine; Nesrine Chakroun; Johan Binesse; denis saulnier; Christiane Bouchier; Nora Zidane; Laurence Ma; Christophe Rusniok; Aurélie Lajus; Carmen Buchrieser; Claudine Médigue; Martin F Polz; Didier Mazel
Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity.
Environmental microbiology 2009;11(8):1959-70.
2009: Valérie Barbe; Stéphane Cruveiller; Frank Kunst; Patricia Lenoble; Guillaume Meurice; Agnieszka Sekowska; David Vallenet; Tingzhang Wang; Ivan Moszer; Claudine Médigue; Antoine Danchin
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.
Microbiology (Reading, England) 2009;155(Pt 6):1758-75.
2009: Mathilde Lescat; Alexandra Calteau; Claire Hoede; Valérie Barbe; Marie Touchon; Eduardo Rocha; Olivier Tenaillon; Claudine Médigue; James R Johnson; Erick Denamur
A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A.
Antimicrobial agents and chemotherapy 2009;53(6):2283-8.
2009: Chantal Peigne; Philippe Bidet; Farah Mahjoub-Messai; Céline Plainvert; Valérie Barbe; Claudine Médigue; Eric Frapy; Xavier Nassif; Erick Denamur; Edouard Bingen; Stéphane Bonacorsi
The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model.
Infection and immunity 2009;77(6):2272-84.
2009: Ravi D Barabote; Gary Xie; David H Leu; Philippe Normand; Anamaria Necsulea; Vincent Daubin; Claudine Médigue; William S Adney; Xin Clare Xu; Alla Lapidus; Rebecca E Parales; Chris Detter; Petar Pujic; David Bruce; Celine Lavire; Jean F Challacombe; Thomas S Brettin; Alison M Berry
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations.
Genome research 2009;19(6):1033-43.
2009: Stéphanie Weiss; Christine Carapito; Jessica Cleiss; Sandrine Koechler; Evelyne Turlin; Jean-Yves Coppee; Michaël Heymann; Valérie Kugler; Magalie Stauffert; Stéphane Cruveiller; Claudine Médigue; Alain Van Dorsselaer; Philippe N Bertin; Florence Arsène-Ploetze
Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data.
Biochimie 2009;91(2):192-203.
2009: Christophe Rusniok; David Vallenet; Stéphanie Floquet; Helen Ewles; Coralie Mouzé-Soulama; Daniel Brown; Aurélie Lajus; Carmen Buchrieser; Claudine Médigue; Philippe Glaser; Vladimir Pelicic
NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis.
Genome biology 2009;10(10):R110.
2008: Claire Amadou; Géraldine Pascal; Sophie Mangenot; Michelle Glew; Cyril Bontemps; Delphine Capela; Sébastien Carrère; Stéphane Cruveiller; Carole Dossat; Aurélie Lajus; Marta Marchetti; Véréna Poinsot; Zoé Rouy; Bertrand Servin; Maged Saad; Chantal Schenowitz; Valérie Barbe; Jacques Batut; Claudine Médigue; Catherine Masson-Boivin
Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia.
Genome research 2008;18(9):1472-83.
2008: Eric Pelletier; Annett Kreimeyer; Stéphanie Bocs; Zoé Rouy; Gábor Gyapay; Rakia Chouari; Delphine Rivière; Akila Ganesan; Patrick Daegelen; Abdelghani Sghir; Georges N Cohen; Claudine Médigue; Jean Weissenbach; Denis Le Paslier
"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.
Journal of bacteriology 2008;190(7):2572-9.
2008: Philippe N Bertin; Claudine Médigue; Philippe Normand
Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems.
Microbiology (Reading, England) 2008;154(Pt 2):347-59.
2008: Marie-Laure ROSSO; Sylvie Chauvaux; Rodrigue Dessein; Caroline Laurans; Lionel Frangeul; Céline Lacroix; Angèle Schiavo; Marie-Agnès Dillies; Jeannine Foulon; Jean-Yves Coppée; Claudine Médigue; Elisabeth Carniel; Michel Simonet; Michaël Marceau
Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression.
BMC microbiology 2008;8():211.
2008: David Vallenet; patrice nordmann; Valérie Barbe; Laurent Poirel; Sophie Mangenot; Elodie Bataille; Carole Dossat; Shahinaz Gas; Annett Kreimeyer; Patricia Lenoble; Sophie Oztas; Julie Poulain; Béatrice Segurens; Catherine Robert; Chantal Abergel; Jean-Michel Claverie; Didier Raoult; Claudine Médigue; Jean Weissenbach; Stéphane Cruveiller
Comparative analysis of Acinetobacters: three genomes for three lifestyles.
PloS one 2008;3(3):e1805.
2008: Véronique de Berardinis; David Vallenet; Vanina Castelli; Marielle Besnard; Agnès Pinet; Corinne Cruaud; Sumitta Samair; Christophe Lechaplais; Gabor Gyapay; Céline Richez; Maxime Durot; Annett Kreimeyer; Francois Le Fèvre; Vincent Schachter; Valérie Pezo; Volker Döring; Claude Scarpelli; Claudine Médigue; Georges N Cohen; Philippe Marlière; Marcel Salanoubat; Jean Weissenbach
A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.
Molecular systems biology 2008;4():174.
2008: Mathieu Picardeau; Dieter Bulach; Christiane Bouchier; Richard L Zuerner; Nora Zidane; Peter J Wilson; Sophie Creno; Elizabeth S Kuczek; Simona Bommezzadri; John C Davis; Annette McGrath; Matthew J Johnson; Caroline Boursaux-Eude; Torsten Seemann; Zoé Rouy; Ross Coppel; Julian I Rood; Aurélie Lajus; John K Davies; Claudine Médigue; Ben Adler
Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis.
PloS one 2008;3(2):e1607.
2007: Claudine Médigue; Ivan Moszer
Annotation, comparison and databases for hundreds of bacterial genomes.
Research in microbiology 2007;158(10):724-36.
2007: Céline Plainvert; Philippe Bidet; Chantal Peigne; Valérie Barbe; Claudine Médigue; Erick Denamur; Edouard Bingen; Stéphane Bonacorsi
A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7.
Journal of bacteriology 2007;189(23):8528-36.
2007: Sylvie Chauvaux; Marie-Laure ROSSO; Lionel Frangeul; Céline Lacroix; Laurent Labarre; Angèle Schiavo; Michael Marceau; Marie-Agnès Dillies; Jeannine Foulon; Jean-Yves Coppée; Claudine Médigue; Michel Simonet; Elisabeth Carniel
Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague.
Microbiology (Reading, England) 2007;153(Pt 9):3112-24.
2007: Annett Kreimeyer; Alain Perret; Christophe Lechaplais; David Vallenet; Claudine Médigue; Marcel Salanoubat; Jean Weissenbach
Identification of the last unknown genes in the fermentation pathway of lysine.
The Journal of biological chemistry 2007;282(10):7191-7.
2007: Anne Derbise; Viviane Chenal-Francisque; Flavie Pouillot; Corinne Fayolle; Marie-Christine Prévost; Claudine Médigue; B Joseph Hinnebusch; Elisabeth Carniel
A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus.
Molecular microbiology 2007;63(4):1145-57.
2007: Pascale Bourhy; Laurence Salaün; Aurélie Lajus; Claudine Médigue; Caroline Boursaux-Eude; Mathieu Picardeau
A genomic island of the pathogen Leptospira interrogans serovar Lai can excise from its chromosome.
Infection and immunity 2007;75(2):677-83.
2006: Hélène Louvel; S Bommezzadri; N Zidane; Caroline Boursaux-Eude; S Creno; Arnaud Magnier; Zoé Rouy; Claudine Médigue; Isabelle Saint-Girons; Christiane Bouchier; Mathieu Picardeau
Comparative and functional genomic analyses of iron transport and regulation in Leptospira spp.
Journal of bacteriology 2006;188(22):7893-904.
2006: Géraldine Pascal; Claudine Médigue; Antoine Danchin
Persistent biases in the amino acid composition of prokaryotic proteins.
BioEssays : news and reviews in molecular, cellular and developmental biology 2006;28(7):726-38.
2006: nicolas vodovar; David Vallenet; Stéphane Cruveiller; Zoé Rouy; Valérie Barbe; Carlos Acosta; Laurence Cattolico; Claire Jubin; Aurélie Lajus; Béatrice Segurens; Benoît Vacherie; Patrick Wincker; Jean Weissenbach; Bruno Lemaitre; Claudine Médigue; Frédéric Boccard
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.
Nature biotechnology 2006;24(6):673-9.
2006: David Vallenet; Laurent Labarre; Zoé Rouy; Valérie Barbe; Stéphanie Bocs; Stéphane Cruveiller; Aurélie Lajus; Géraldine Pascal; Claude Scarpelli; Claudine Médigue
MaGe: a microbial genome annotation system supported by synteny results.
Nucleic acids research 2006;34(1):53-65.
2005: Claudine Médigue; Evelyne Krin; Géraldine Pascal; Valérie Barbe; Andreas Bernsel; Philippe N Bertin; Frankie Cheung; Stéphane Cruveiller; Salvino D'Amico; Angela Duilio; Gang Fang; Georges Feller; Christine Ho; Sophie Mangenot; Gennaro Marino; Johan Nilsson; Ermenegilda Parrilli; Eduardo P C Rocha; Zoé Rouy; Agnieszka Sekowska; Maria Luisa Tutino; David Vallenet; Gunnar von Heijne; Antoine Danchin
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.
Genome research 2005;15(10):1325-35.
2005: Stéphane Cruveiller; Jérôme Le Saux; David Vallenet; Aurélie Lajus; Stéphanie Bocs; Claudine Médigue
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
Nucleic acids research 2005;33(Web Server issue):W471-9.
2005: Géraldine Pascal; Claudine Médigue; Antoine Danchin
Universal biases in protein composition of model prokaryotes.
Proteins 2005;60(1):27-35.
2004: Valérie Barbe; David Vallenet; Nuria Fonknechten; Annett Kreimeyer; Sophie Oztas; Laurent Labarre; Stéphane Cruveiller; Catherine Robert; Simone Duprat; Patrick Wincker; L Nicholas Ornston; Jean Weissenbach; Philippe Marlière; Georges N Cohen; Claudine Médigue
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.
Nucleic acids research 2004;32(19):5766-79.
2003: Eric Duchaud; Christophe Rusniok; Lionel Frangeul; Carmen Buchrieser; Alain Givaudan; Séad Taourit; Stéphanie Bocs; Caroline Boursaux-Eude; Michael Chandler; Jean-François Charles; Elie Dassa; Richard Derose; Sylviane Derzelle; Georges Freyssinet; Sophie Gaudriault; Claudine Médigue; Anne Lanois; Kerrie Powell; Patricia Siguier; Rachel Vincent; Vincent Wingate; Mohamed Zouine; Philippe Glaser; Noël Boemare; Antoine Danchin; Frank Kunst
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.
Nature biotechnology 2003;21(11):1307-13.
2003: Stéphanie Bocs; Stéphane Cruveiller; David Vallenet; Grégory Nuel; Claudine Médigue
AMIGene: Annotation of MIcrobial Genes.
Nucleic acids research 2003;31(13):3723-6.
2003: Patrick Durand; Claudine Médigue; Anne Morgat; Yves VANDENBROUCK; Alain Viari; François Rechenmann
Integration of data and methods for genome analysis.
Current opinion in drug discovery & development 2003;6(3):346-52.
2003: Kwok-Yung Yuen; Géraldine Pascal; Samson S Y Wong; Philippe Glaser; Patrick C Y Woo; Frank Kunst; James J Cai; Elim Y L Cheung; Claudine Médigue; Antoine Danchin
Exploring the Penicillium marneffei genome.
Archives of microbiology 2003;179(5):339-53.
2002: Jean-Christophe Camus; Melinda J Pryor; Claudine Médigue; Stewart T Cole
Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.
Microbiology (Reading, England) 2002;148(Pt 10):2967-73.
2002: Claudine Médigue; Benjamin Chun-Yu Wong; Marie Chia Mi Lin; Stéphanie Bocs; Antoine Danchin
The secE gene of Helicobacter pylori.
Journal of bacteriology 2002;184(10):2837-40.
2002: Stéphanie Bocs; Antoine Danchin; Claudine Médigue
Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.
BMC bioinformatics 2002;3():5.
1999: Claudine Médigue; M Rose; Alain Viari; Antoine Danchin
Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence.
Genome research 1999;9(11):1116-27.
1999: Claudine Médigue; François Rechenmann; Antoine Danchin; Alain Viari
Imagene: an integrated computer environment for sequence annotation and analysis.
Bioinformatics (Oxford, England) 1999;15(1):2-15.
1995: Claudine Médigue; Ivan Moszer; Alain Viari; Antoine Danchin
Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype.
Gene 1995;165(1):GC37-51.
1995: Claudine Médigue; T Vermat; G Bisson; Alain Viari; Antoine Danchin
Cooperative computer system for genome sequence analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():249-58.
1993: Claudine Médigue; Alain Viari; Alain Hénaut; Antoine Danchin
Colibri: a functional data base for the Escherichia coli genome.
Microbiological reviews 1993;57(3):623-54.
1993: O Schmeltzer; Claudine Médigue; P Uvietta; F Rechenmann; F Dorkeld; Guy Perrière; Christian Gautier
Building large knowledge bases in molecular biology.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1993;1():345-53.
1991: Claudine Médigue; T Rouxel; P Vigier; Alain Hénaut; Antoine Danchin
Evidence for horizontal gene transfer in Escherichia coli speciation.
Journal of molecular biology 1991;222(4):851-6.
1991: Claudine Médigue; Alain Viari; Alain Hénaut; Antoine Danchin
Escherichia coli molecular genetic map (1500 kbp): update II.
Molecular microbiology 1991;5(11):2629-40.
1991: Antoine Danchin; Claudine Médigue; O Gascuel; H Soldano; Alain Hénaut
From data banks to data bases.
Research in microbiology 1991;142(7-8):913-6.
1990: Claudine Médigue; Alain Hénaut; Antoine Danchin
Escherichia coli molecular genetic map (1000 kbp): update I.
Molecular microbiology 1990;4(9):1443-54.
1990: Claudine Médigue; J P Bouché; Alain Hénaut; Antoine Danchin
Mapping of sequenced genes (700 kbp) in the restriction map of the Escherichia coli chromosome.
Molecular microbiology 1990;4(2):169-87.