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Fan Meng

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Bradley S Carter; Fan Meng; Robert C Thompson
Glucocorticoid treatment of astrocytes results in temporally dynamic transcriptome regulation and astrocyte-enriched mRNA changes in vitro.
Gang Su; Charles F Burant; Christopher W Beecher; Brian D Athey; Fan Meng
Integrated metabolome and transcriptome analysis of the NCI60 dataset.
Gang Su; Allan Kuchinsky; John H Morris; David States; Fan Meng
GLay: community structure analysis of biological networks.

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All Publications

2012: Bradley S Carter; Fan Meng; Robert C Thompson
Glucocorticoid treatment of astrocytes results in temporally dynamic transcriptome regulation and astrocyte-enriched mRNA changes in vitro.
Physiological genomics 2012;44(24):1188-200.
2011: Gang Su; Charles F Burant; Christopher W Beecher; Brian D Athey; Fan Meng
Integrated metabolome and transcriptome analysis of the NCI60 dataset.
BMC bioinformatics 2011;12 Suppl 1():S36.
2010: Gang Su; Allan Kuchinsky; John H Morris; David States; Fan Meng
GLay: community structure analysis of biological networks.
Bioinformatics (Oxford, England) 2010;26(24):3135-7.
2010: Gang Su; Brian D Athey; Fan Meng
GSearcher: agile attribute querying for biological networks.
Bioinformatics (Oxford, England) 2010;26(24):3138-9.
2010: Manhong Dai; Robert C Thompson; Christopher A. Maher; Rafael Contreras-Galindo; Mark H Kaplan; David M Markovitz; Gilbert S Omenn; Fan Meng
NGSQC: cross-platform quality analysis pipeline for deep sequencing data.
BMC genomics 2010;11 Suppl 4():S7.
2010: Weijian Xuan; Manhong Dai; Josh Buckner; Barbara Mirel; J Song; Brian D Athey; Stanley J Watson Jr; Fan Meng
Cross-domain neurobiology data integration and exploration.
BMC genomics 2010;11 Suppl 3():S6.
2010: Joshua Buckner; Justin Wilson; Mark Seligman; Brian D Athey; Stanley J Watson Jr; Fan Meng
The gputools package enables GPU computing in R.
Bioinformatics (Oxford, England) 2010;26(1):134-5.
2009: Laura J Scott; Pierandrea Muglia; Xiangyang Q Kong; Weihua Guan; Matthew Flickinger; Ruchi Upmanyu; Federica Tozzi; Jun Z Li; Margit Burmeister; Devin Absher; Robert C Thompson; Clyde Francks; Fan Meng; Athos Antoniades; Audrey M Southwick; Alan F Schatzberg; William E Bunney; Jack D Barchas; Edward G Jones; Richard Day; Keith Matthews; Peter McGuffin; John S Strauss; James L Kennedy; Lefkos Middleton; Allen D Roses; Stanley J Watson Jr; John B Vincent; Richard Myers; Ann E Farmer; Huda Akil; Daniel K Burns; Michael Boehnke
Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(18):7501-6.
2009: René Bernard; Ilan Kerman; Fan Meng; Simon J Evans; Irmgard Amrein; Edward G Jones; William E Bunney; Huda Akil; Stanley J Watson Jr; Robert C Thompson
Gene expression profiling of neurochemically defined regions of the human brain by in situ hybridization-guided laser capture microdissection.
Journal of neuroscience methods 2009;178(1):46-54.
2009: Weijian Xuan; Manhong Dai; Barbara Mirel; J Song; Brian D Athey; Stanley J Watson Jr; Fan Meng
Open Biomedical Ontology-based Medline exploration.
BMC bioinformatics 2009;10 Suppl 5():S6.
2008: Pedro Adolfo Sequeira; Fan Meng; B Rollins; Richard Myers; E G Jones; Stanley J Watson Jr; Huda Akil; A F Schatzberg; J Barchas; W E Bunney; M P Vawter
Coding SNPs included in exon arrays for the study of psychiatric disorders.
Molecular psychiatry 2008;13(4):363-5.
2008: Bohua Yu; Elvis Jakupovic; Justin Wilson; Manhong Dai; Weijian Xuan; Barbara Mirel; Brian D Athey; Stanley J Watson Jr; Fan Meng
A diagram editor for efficient biomedical knowledge capture and integration.
Summit on translational bioinformatics 2008;2008():130-4.
2007: Adriaan M Karssen; Song Her; Jun Z Li; Paresh D Patel; Fan Meng; William E Bunney; Edward G Jones; Stanley J Watson Jr; Huda Akil; Richard Myers; Alan F Schatzberg; David M Lyons
Stress-induced changes in primate prefrontal profiles of gene expression.
Molecular psychiatry 2007;12(12):1089-102.
2007: Weijian Xuan; Pinglang Wang; Stanley J Watson Jr; Fan Meng
Medline search engine for finding genetic markers with biological significance.
Bioinformatics (Oxford, England) 2007;23(18):2477-84.
2007: Paresh D Patel; Daniel Bochar; David L Turner; Fan Meng; Helena M Mueller; Crystal G Pontrello
Regulation of tryptophan hydroxylase-2 gene expression by a bipartite RE-1 silencer of transcription/neuron restrictive silencing factor (REST/NRSF) binding motif.
The Journal of biological chemistry 2007;282(37):26717-24.
2007: Manhong Dai; Pinglang Wang; Elvis Jakupovic; Stanley J Watson Jr; Fan Meng
Web-based GeneChip analysis system for large-scale collaborative projects.
Bioinformatics (Oxford, England) 2007;23(16):2185-7.
2007: Justin Wilson; Manhong Dai; Elvis Jakupovic; Stanley J Watson Jr; Fan Meng
Supercomputing with toys: harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problem.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2007;6():387-90.
2007: Weijian Xuan; Manhong Dai; Barbara Mirel; Justin Wilson; Brian D Athey; Stanley J Watson Jr; Fan Meng
An active visual search interface for Medline.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2007;6():359-69.
2007: Jun Z Li; Fan Meng; Larisa Tsavaler; Simon J Evans; Prabhakara V Choudary; Hiroaki Tomita; Marquis P Vawter; David Walsh; Vida Shokoohi; Tisha Chung; William E Bunney; Edward G Jones; Huda Akil; Stanley J Watson Jr; Richard Myers
Sample matching by inferred agonal stress in gene expression analyses of the brain.
BMC genomics 2007;8():336.
2007: Elzbieta Sliwerska; Fan Meng; Terence P Speed; Edward G Jones; William E Bunney; Huda Akil; Stanley J Watson Jr; Margit Burmeister
SNPs on chips: the hidden genetic code in expression arrays.
Biological psychiatry 2007;61(1):13-6.
2006: Pinglang Wang; Manhong Dai; Weijian Xuan; Richard C McEachin; Anne U Jackson; Laura J Scott; Brian D Athey; Stanley J Watson Jr; Fan Meng
SNP Function Portal: a web database for exploring the function implication of SNP alleles.
Bioinformatics (Oxford, England) 2006;22(14):e523-9.
2006: Marquis P Vawter; Hiroaki Tomita; Fan Meng; B Bolstad; Jun Li; Simon J Evans; Prabhakara V Choudary; Mary E Atz; L Shao; C Neal; David M Walsh; Margit Burmeister; T Speed; Rick Myers; Edward G Jones; Stanley J Watson Jr; Huda Akil; William E Bunney
Mitochondrial-related gene expression changes are sensitive to agonal-pH state: implications for brain disorders.
Molecular psychiatry 2006;11(7):615, 663-79.
2006: Adriaan M Karssen; Jun Z Li; Song Her; Paresh D Patel; Fan Meng; Simon J Evans; Marquis P Vawter; Hiroaki Tomita; Prabhakara V Choudary; William E Bunney; Edward G Jones; Stanley J Watson Jr; Huda Akil; Richard Myers; Alan F Schatzberg; David M Lyons
Application of microarray technology in primate behavioral neuroscience research.
Methods (San Diego, Calif.) 2006;38(3):227-34.
2006: John D H Stead; Charles Neal; Fan Meng; Yongjia Wang; Simon J Evans; Delia M Vazquez; Stanley J Watson Jr; Huda Akil
Transcriptional profiling of the developing rat brain reveals that the most dramatic regional differentiation in gene expression occurs postpartum.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2006;26(1):345-53.
2005: Weijian Xuan; Stanley J Watson Jr; Fan Meng
GeneInfoMiner--a web server for exploring biomedical literature using batch sequence ID.
Bioinformatics (Oxford, England) 2005;21(16):3452-3.
2005: Wan-Chun Sun; Yan Cao; Lei Jin; Li-zhen Wang; Fan Meng; Xing-Zu Zhu
Modulating effect of adenosine deaminase on function of adenosine A1 receptors.
Acta pharmacologica Sinica 2005;26(2):160-5.
2005: Manhong Dai; Pinglang Wang; Andrew Boyd; Georgi Kostov; Brian D Athey; Edward G Jones; William E Bunney; Richard Myers; Terence P Speed; Huda Akil; Stanley J Watson Jr; Fan Meng
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
Nucleic acids research 2005;33(20):e175.
2005: Wan-Chun Sun; Lei Jin; Yan Cao; Li-zhen Wang; Fan Meng; Xing-Zu Zhu
Cloning, expression, and functional analysis of human dopamine D1 receptors.
Acta pharmacologica Sinica 2005;26(1):27-32.
2004: Simon J Evans; Prabhakara V Choudary; Charles R Neal; J Z Li; Marquis P Vawter; H Tomita; Juan F Lopez; Robert C Thompson; Fan Meng; John D H Stead; D M Walsh; Richard Myers; William E Bunney; Stanley J Watson Jr; Edward G Jones; Huda Akil
Dysregulation of the fibroblast growth factor system in major depression.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(43):15506-11.
2002: Pinglang Wang; Fei Ding; Hsienyuan Chiang; Robert C Thompson; Stanley J Watson Jr; Fan Meng
ProbeMatchDB--a web database for finding equivalent probes across microarray platforms and species.
Bioinformatics (Oxford, England) 2002;18(3):488-9.
2000: Stanley J Watson Jr; Fan Meng; Robert C Thompson; Huda Akil
The "chip" as a specific genetic tool.
Biological psychiatry 2000;48(12):1147-56.
2000: G Bonner; Fan Meng; Huda Akil
Selectivity of mu-opioid receptor determined by interfacial residues near third extracellular loop.
European journal of pharmacology 2000;403(1-2):37-44.
2000: Fan Meng; Qiang Wei; Mary T Hoversten; Larry P Taylor; Huda Akil
Switching agonist/antagonist properties of opiate alkaloids at the delta opioid receptor using mutations based on the structure of the orphanin FQ receptor.
The Journal of biological chemistry 2000;275(29):21939-45.
1998: Fan Meng; Y Ueda; Mary T Hoversten; Larry P Taylor; Rainer K Reinscheid; FJ Monsma; Stanley J Watson Jr; Olivier Civelli; Huda Akil
Creating a functional opioid alkaloid binding site in the orphanin FQ receptor through site-directed mutagenesis.
Molecular pharmacology 1998;53(4):772-7.
1998: Peter Coward; H G Wada; Matthew Falk; SD Chan; Fan Meng; Huda Akil; Bruce R Conklin
Controlling signaling with a specifically designed Gi-coupled receptor.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(1):352-7.
1996: Fan Meng; Larry P Taylor; Mary T Hoversten; Y Ueda; A Ardati; Rainer K Reinscheid; FJ Monsma; Stanley J Watson Jr; Olivier Civelli; Huda Akil
Moving from the orphanin FQ receptor to an opioid receptor using four point mutations.
The Journal of biological chemistry 1996;271(50):32016-20.
1996: Fan Meng; Y Ueda; Mary T Hoversten; Robert C Thompson; L Taylor; Stanley J Watson Jr; Huda Akil
Mapping the receptor domains critical for the binding selectivity of delta-opioid receptor ligands.
European journal of pharmacology 1996;311(2-3):285-92.
1996: B Watson; Fan Meng; Huda Akil
A chimeric analysis of the opioid receptor domains critical for the binding selectivity of mu opioid ligands.
Neurobiology of disease 1996;3(1):87-96.
1996: Huda Akil; Fan Meng; A Mansour; Robert C Thompson; G X Xie; Stanley J Watson Jr
Cloning and characterization of multiple opioid receptors.
NIDA research monograph 1996;161():127-40.
1995: B B Ruzicka; C A Fox; Robert C Thompson; Fan Meng; Stanley J Watson Jr; Huda Akil
Primary astroglial cultures derived from several rat brain regions differentially express mu, delta and kappa opioid receptor mRNA.
Brain research. Molecular brain research 1995;34(2):209-20.
1995: Fan Meng; Mary T Hoversten; Robert C Thompson; L Taylor; Stanley J Watson Jr; Huda Akil
A chimeric study of the molecular basis of affinity and selectivity of the kappa and the delta opioid receptors. Potential role of extracellular domains.
The Journal of biological chemistry 1995;270(21):12730-6.
1994: A Mansour; C A Fox; S Burke; Fan Meng; Robert C Thompson; Huda Akil; Stanley J Watson Jr
Mu, delta, and kappa opioid receptor mRNA expression in the rat CNS: an in situ hybridization study.
The Journal of comparative neurology 1994;350(3):412-38.
1994: Fan Meng; G X Xie; D Chalmers; Caurnel Morgan; Stanley J Watson Jr; Huda Akil
Cloning and characterization of a pharmacologically distinct A1 adenosine receptor from guinea pig brain.
Brain research. Molecular brain research 1994;26(1-2):143-55.
1994: Fan Meng; G X Xie; D Chalmers; Caurnel Morgan; Stanley J Watson Jr; Huda Akil
Cloning and expression of the A2a adenosine receptor from guinea pig brain.
Neurochemical research 1994;19(5):613-21.
1994: G X Xie; Fan Meng; A Mansour; Robert C Thompson; Mary T Hoversten; A Goldstein; Stanley J Watson Jr; Huda Akil
Primary structure and functional expression of a guinea pig kappa opioid (dynorphin) receptor.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(9):3779-83.
1994: A Mansour; C A Fox; Fan Meng; Huda Akil; Stanley J Watson Jr
Kappa 1 receptor mRNA distribution in the rat CNS: comparison to kappa receptor binding and prodynorphin mRNA.
Molecular and cellular neurosciences 1994;5(2):124-44.
1993: Fan Meng; G X Xie; Robert C Thompson; A Mansour; A Goldstein; Stanley J Watson Jr; Huda Akil
Cloning and pharmacological characterization of a rat kappa opioid receptor.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(21):9954-8.
1992: A Mansour; Fan Meng; James Meador-Woodruff; Larry P Taylor; Olivier Civelli; Huda Akil
Site-directed mutagenesis of the human dopamine D2 receptor.
European journal of pharmacology 1992;227(2):205-14.