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Hans-Werner Mewes
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Research Profile (preview)
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Chemicals & Drugs
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22
Frishman, Dmitrij
14
Ruepp, Andreas
14
Tetko, Igor
9
Stümpflen, Volker
9
Antonov, Alexey
8
Heumann, Klaus
8
Mannhaupt, Gertrud
8
Mayer, Klaus
8
Münsterkötter, Martin
7
Güldener, Ulrich
7
Albermann, Kaj
6
Oesterheld, Matthias
6
Pagel, Philipp
6
Rattei, Thomas
6
Rudd, Stephen
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All Publications
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2009: Arnold Roland; Brandmaier Stefan; Kleine Frederick; Tischler Patrick; Heinz Eva; Behrens Sebastian; Niinikoski Antti; Mewes Hans-Werner; Horn Matthias; Rattei Thomas
Sequence-based prediction of type III secreted proteins.
PLoS pathogens 2009;5(4):e1000376.
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2009: Dietmann Sabine; Georgii Elisabeth; Antonov Alexey; Tsuda Koji; Mewes Hans-Werner
The DICS repository: module-assisted analysis of disease-related gene lists.
Bioinformatics (Oxford, England) 2009;25(6):830-1.
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2009: Waegele Brigitte; Dunger-Kaltenbach Irmtraud; Fobo Gisela; Montrone Corinna; Mewes H-Werner; Ruepp Andreas
CRONOS: the cross-reference navigation server.
Bioinformatics (Oxford, England) 2009;25(1):141-3.
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2009: Kastenmüller Gabi; Schenk Maria Elisabeth; Gasteiger Johann; Mewes Hans-Werner
Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.
Genome biology 2009;10(3):R28.
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2008: Antonov Alexey V; Mewes Hans W
Complex phylogenetic profiling reveals fundamental genotype-phenotype associations.
Computational biology and chemistry 2008;32(6):412-6.
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2008: Surmeli Dimitrij; Ratmann Oliver; Mewes Hans-Werner; Tetko Igor V
FunCat functional inference with belief propagation and feature integration.
Computational biology and chemistry 2008;32(5):375-7.
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2008: Kastenmüller Gabi; Gasteiger Johann; Mewes Hans-Werner
An environmental perspective on large-scale genome clustering based on metabolic capabilities.
Bioinformatics (Oxford, England) 2008;24(16):i56-62.
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2008: Waegele Brigitte; Schmidt Thorsten; Mewes H Werner; Ruepp Andreas
OREST: the online resource for EST analysis.
Nucleic acids research 2008;36(Web Server issue):W140-4.
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2008: Antonov Alexey V; Schmidt Thorsten; Wang Yu; Mewes Hans W
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data.
Nucleic acids research 2008;36(Web Server issue):W347-51.
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2008: Mewes H W; Dietmann S; Frishman D; Gregory R; Mannhaupt G; Mayer K F X; Münsterkötter M; Ruepp A; Spannagl M; Stümpflen V; Rattei T
MIPS: analysis and annotation of genome information in 2007.
Nucleic acids research 2008;36(Database issue):D196-201.
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2008: Ruepp Andreas; Brauner Barbara; Dunger-Kaltenbach Irmtraud; Frishman Goar; Montrone Corinna; Stransky Michael; Waegele Brigitte; Schmidt Thorsten; Doudieu Octave Noubibou; Stümpflen Volker; Mewes H Werner
CORUM: the comprehensive resource of mammalian protein complexes.
Nucleic acids research 2008;36(Database issue):D646-50.
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2007: Emmersen Jeppe; Rudd Stephen; Mewes Hans-Werner; Tetko Igor V
Separation of sequences from host-pathogen interface using triplet nucleotide frequencies.
Fungal genetics and biology : FG & B 2007;44(4):231-41.
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2007: Riley M Louise; Schmidt Thorsten; Artamonova Irena I; Wagner Christian; Volz Andreas; Heumann Klaus; Mewes Hans-Werner; Frishman Dmitrij
PEDANT genome database: 10 years online.
Nucleic acids research 2007;35(Database issue):D354-7.
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2006: Antonov Alexey V; Mewes Hans W
Complex functionality of gene groups identified from high-throughput data.
Journal of molecular biology 2006;363(1):289-96.
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2006: Tetko Igor V; Bruneau Pierre; Mewes Hans-Werner; Rohrer Douglas C; Poda Gennadiy I
Can we estimate the accuracy of ADME-Tox predictions?
Drug discovery today 2006;11(15-16):700-7.
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2006: Güldener Ulrich; Seong Kye-Yong; Boddu Jayanand; Cho Seungho; Trail Frances; Xu Jin-Rong; Adam Gerhard; Mewes Hans-Werner; Muehlbauer Gary J; Kistler H Corby
Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta.
Fungal genetics and biology : FG & B 2006;43(5):316-25.
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2006: Tetko Igor V; Haberer Georg; Rudd Stephen; Meyers Blake; Mewes Hans-Werner; Mayer Klaus F X
Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana.
PLoS computational biology 2006;2(3):e21.
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2006: Bhonde Mandar R; Hanski Marie-Luise; Budczies Jan; Cao Minh; Gillissen Bernd; Moorthy Dhatchana; Simonetta Federico; Scherübl Hans; Truss Matthias; Hagemeier Christian; Mewes Hans-Werner; Daniel Peter T; Zeitz Martin; Hanski Christoph
DNA damage-induced expression of p53 suppresses mitotic checkpoint kinase hMps1: the lack of this suppression in p53MUT cells contributes to apoptosis.
The Journal of biological chemistry 2006;281(13):8675-85.
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2006: Antonov Alexey V; Mewes Hans W
BIOREL: the benchmark resource to estimate the relevance of the gene networks.
FEBS letters 2006;580(3):844-8.
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2006: Ruepp Andreas; Doudieu Octave Noubibou; van den Oever Jos; Brauner Barbara; Dunger-Kaltenbach Irmtraud; Fobo Gisela; Frishman Goar; Montrone Corinna; Skornia Christine; Wanka Steffi; Rattei Thomas; Pagel Philipp; Riley Louise; Frishman Dmitrij; Surmeli Dimitrij; Tetko Igor V; Oesterheld Matthias; Stümpflen Volker; Mewes H Werner
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Nucleic acids research 2006;34(Database issue):D568-71.
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2006: Güldener Ulrich; Mannhaupt Gertrud; Münsterkötter Martin; Haase Dirk; Oesterheld Matthias; Stümpflen Volker; Mewes Hans-Werner; Adam Gerhard
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum.
Nucleic acids research 2006;34(Database issue):D456-8.
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2006: Güldener Ulrich; Münsterkötter Martin; Oesterheld Matthias; Pagel Philipp; Ruepp Andreas; Mewes Hans-Werner; Stümpflen Volker
MPact: the MIPS protein interaction resource on yeast.
Nucleic acids research 2006;34(Database issue):D436-41.
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2006: Rattei Thomas; Arnold Roland; Tischler Patrick; Lindner Dominik; Stümpflen Volker; Mewes H Werner
SIMAP: the similarity matrix of proteins.
Nucleic acids research 2006;34(Database issue):D252-6.
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2006: Mewes H W; Frishman D; Mayer K F X; Münsterkötter M; Noubibou O; Pagel P; Rattei T; Oesterheld M; Ruepp A; Stümpflen V
MIPS: analysis and annotation of proteins from whole genomes in 2005.
Nucleic acids research 2006;34(Database issue):D169-72.
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2006: Dietmann Sabine; Aguilar Daniel; Mader Michael; Oesterheld Matthias; Ruepp Andreas; Stuempflen Volker; Mewes Hans-Werner
Resources and tools for investigating biomolecular networks in mammals.
Current pharmaceutical design 2006;12(29):3723-34.
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2006: Antonov Alexey V; Tetko Igor V; Mewes Hans W
A systematic approach to infer biological relevance and biases of gene network structures.
Nucleic acids research 2006;34(1):e6.
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2005: Antonov Alexey V; Tetko Igor V; Kosykh Denis; Surmeli Dmitrij; Mewes Hans-Werner
Exploiting scale-free information from expression data for cancer classification.
Computational biology and chemistry 2005;29(4):288-93.
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2005: Tetko Igor V; Brauner Barbara; Dunger-Kaltenbach Irmtraud; Frishman Goar; Montrone Corinna; Fobo Gisela; Ruepp Andreas; Antonov Alexey V; Surmeli Dimitrij; Mewes Hans-Wernen
MIPS bacterial genomes functional annotation benchmark dataset.
Bioinformatics (Oxford, England) 2005;21(10):2520-1.
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2005: Friedel Caroline C; Jahn Katharina H V; Sommer Selina; Rudd Stephen; Mewes Hans W; Tetko Igor V
Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.
Bioinformatics (Oxford, England) 2005;21(8):1383-8.
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2005: Pagel Philipp; Kovac Stefan; Oesterheld Matthias; Brauner Barbara; Dunger-Kaltenbach Irmtraud; Frishman Goar; Montrone Corinna; Mark Pekka; Stümpflen Volker; Mewes Hans-Werner; Ruepp Andreas; Frishman Dmitrij
The MIPS mammalian protein-protein interaction database.
Bioinformatics (Oxford, England) 2005;21(6):832-4.
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2005: Wang Yu; Tetko Igor V; Hall Mark A; Frank Eibe; Facius Axel; Mayer Klaus F X; Mewes Hans W
Gene selection from microarray data for cancer classification--a machine learning approach.
Computational biology and chemistry 2005;29(1):37-46.
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2005: Güldener U; Münsterkötter M; Kastenmüller G; Strack N; van Helden J; Lemer C; Richelles J; Wodak S J; García-Martínez J; Pérez-Ortín J E; Michael H; Kaps A; Talla E; Dujon B; André B; Souciet J L; De Montigny J; Bon E; Gaillardin C; Mewes H W
CYGD: the Comprehensive Yeast Genome Database.
Nucleic acids research 2005;33(Database issue):D364-8.
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2005: Riley M Louise; Schmidt Thorsten; Wagner Christian; Mewes Hans-Werner; Frishman Dmitrij
The PEDANT genome database in 2005.
Nucleic acids research 2005;33(Database issue):D308-10.
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2005: Tetko Igor V; Facius Axel; Ruepp Andreas; Mewes Hans-Werner
Super paramagnetic clustering of protein sequences.
BMC bioinformatics 2005;6():82.
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2004: Antonov Alexey V; Tetko Igor V; Prokopenko Volodymyr V; Kosykh Denis; Mewes Hans W
A web portal for classification of expression data using maximal margin linear programming.
Bioinformatics (Oxford, England) 2004;20(17):3284-5.
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2004: Horn Matthias; Collingro Astrid; Schmitz-Esser Stephan; Beier Cora L; Purkhold Ulrike; Fartmann Berthold; Brandt Petra; Nyakatura Gerald J; Droege Marcus; Frishman Dmitrij; Rattei Thomas; Mewes Hans-Werner; Wagner Michael
Illuminating the evolutionary history of chlamydiae.
Science (New York, N.Y.) 2004;304(5671):728-30.
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2004: Antonov Alexey V; Tetko Igor V; Mader Michael T; Budczies Jan; Mewes Hans W
Optimization models for cancer classification: extracting gene interaction information from microarray expression data.
Bioinformatics (Oxford, England) 2004;20(5):644-52.
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2004: Pagel Philipp; Mewes Hans Werner; Frishman Dmitrij
Conservation of protein-protein interactions - lessons from ascomycota.
Trends in genetics : TIG 2004;20(2):72-6.
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2004: Schoof Heiko; Ernst Rebecca; Nazarov Vladimir; Pfeifer Lukas; Mewes Hans-Werner; Mayer Klaus F X
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.
Nucleic acids research 2004;32(Database issue):D373-6.
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2004: Mewes H W; Amid C; Arnold R; Frishman D; Güldener U; Mannhaupt G; Münsterkötter M; Pagel P; Strack N; Stümpflen V; Warfsmann J; Ruepp A
MIPS: analysis and annotation of proteins from whole genomes.
Nucleic acids research 2004;32(Database issue):D41-4.
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2004: Ruepp Andreas; Zollner Alfred; Maier Dieter; Albermann Kaj; Hani Jean; Mokrejs Martin; Tetko Igor; Güldener Ulrich; Mannhaupt Gertrud; Münsterkötter Martin; Mewes H Werner
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.
Nucleic acids research 2004;32(18):5539-45.
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2003: Mannhaupt Gertrud; Montrone Corinna; Haase Dirk; Mewes H Werner; Aign Verena; Hoheisel Jörg D; Fartmann Berthold; Nyakatura Gerald; Kempken Frank; Maier Josef; Schulte Ulrich
What's in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence.
Nucleic acids research 2003;31(7):1944-54.
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2003: Bon Elisabeth; Casaregola Serge; Blandin Gaëlle; Llorente Bertrand; Neuvéglise Cécile; Munsterkotter Martin; Guldener Ulrich; Mewes Hans-Werner; Van Helden Jacques; Dujon Bernard; Gaillardin Claude
Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.
Nucleic acids research 2003;31(4):1121-35.
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2003: Frishman Dmitrij; Mokrejs Martin; Kosykh Denis; Kastenmüller Gabi; Kolesov Grigory; Zubrzycki Igor; Gruber Christian; Geier Birgitta; Kaps Andreas; Albermann Kaj; Volz Andreas; Wagner Christian; Fellenberg Matthias; Heumann Klaus; Mewes Hans-Werner
The PEDANT genome database.
Nucleic acids research 2003;31(1):207-11.
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2003: Rudd Stephen; Mewes Hans-Werner; Mayer Klaus F X
Sputnik: a database platform for comparative plant genomics.
Nucleic acids research 2003;31(1):128-32.
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2002: Kolesov Grigory; Mewes Hans-Werner; Frishman Dmitrij
SNAPper: gene order predicts gene function.
Bioinformatics (Oxford, England) 2002;18(7):1017-9.
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2002: Morgenstern Burkhard; Rinner Oliver; Abdeddaïm Saïd; Haase Dirk; Mayer Klaus F X; Dress Andreas W M; Mewes Hans-Werner
Exon discovery by genomic sequence alignment.
Bioinformatics (Oxford, England) 2002;18(6):777-87.
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2002: Frishman Dmitrij; Kaps Andreas; Mewes Hans-Werner
Online genomics facilities in the new millennium.
Pharmacogenomics 2002;3(2):265-71.
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2002: Schulte Ulrich; Becker Irmgard; Mewes H Werner; Mannhaupt Gertrud
Large scale analysis of sequences from Neurospora crassa.
Journal of biotechnology 2002;94(1):3-13.
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2002: Schoof Heiko; Zaccaria Paolo; Gundlach Heidrun; Lemcke Kai; Rudd Stephen; Kolesov Grigory; Arnold Roland; Mewes H W; Mayer Klaus F X
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome.
Nucleic acids research 2002;30(1):91-3.
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2002: Mewes H W; Frishman D; Güldener U; Mannhaupt G; Mayer K; Mokrejs M; Morgenstern B; Münsterkötter M; Rudd S; Weil B
MIPS: a database for genomes and protein sequences.
Nucleic acids research 2002;30(1):31-4.
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2001: Kolesov G; Mewes H W; Frishman D
SNAPping up functionally related genes based on context information: a colinearity-free approach.
Journal of molecular biology 2001;311(4):639-56.
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2001: Mayer K; Murphy G; Tarchini R; Wambutt R; Volckaert G; Pohl T; Düsterhöft A; Stiekema W; Entian K D; Terryn N; Lemcke K; Haase D; Hall C R; van Dodeweerd A M; Tingey S V; Mewes H W; Bevan M W; Bancroft I
Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana.
Genome research 2001;11(7):1167-74.
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2001: Geier B; Kastenmüller G; Fellenberg M; Mewes H W; Morgenstern B
The HIB database of annotated UniGene clusters.
Bioinformatics (Oxford, England) 2001;17(6):571-2.
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2001: Wiemann S; Weil B; Wellenreuther R; Gassenhuber J; Glassl S; Ansorge W; Böcher M; Blöcker H; Bauersachs S; Blum H; Lauber J; Düsterhöft A; Beyer A; Köhrer K; Strack N; Mewes H W; Ottenwälder B; Obermaier B; Tampe J; Heubner D; Wambutt R; Korn B; Klein M; Poustka A
Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
Genome research 2001;11(3):422-35.
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2001: Frishman D; Albermann K; Hani J; Heumann K; Metanomski A; Zollner A; Mewes H W
Functional and structural genomics using PEDANT.
Bioinformatics (Oxford, England) 2001;17(1):44-57.
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2000: Ruepp A; Graml W; Santos-Martinez M L; Koretke K K; Volker C; Mewes H W; Frishman D; Stocker S; Lupas A N; Baumeister W
The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum.
Nature 2000;407(6803):508-13.
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2000: Scharfe C; Zaccaria P; Hoertnagel K; Jaksch M; Klopstock T; Dembowski M; Lill R; Prokisch H; Gerbitz K D; Neupert W; Mewes H W; Meitinger T
MITOP, the mitochondrial proteome database: 2000 update.
Nucleic acids research 2000;28(1):155-8.
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2000: Mewes H W; Frishman D; Gruber C; Geier B; Haase D; Kaps A; Lemcke K; Mannhaupt G; Pfeiffer F; Schüller C; Stocker S; Weil B
MIPS: a database for genomes and protein sequences.
Nucleic acids research 2000;28(1):37-40.
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2000: Fellenberg M; Albermann K; Zollner A; Mewes H W; Hani J
Integrative analysis of protein interaction data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():152-61.
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1999: Scharfe C; Zaccaria P; Hoertnagel K; Jaksch M; Klopstock T; Lill R; Prokisch H; Gerbitz K D; Mewes H W; Meitinger T
MITOP: database for mitochondria-related proteins, genes and diseases.
Nucleic acids research 1999;27(1):153-5.
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1999: Mewes H W; Heumann K; Kaps A; Mayer K; Pfeiffer F; Stocker S; Frishman D
MIPS: a database for genomes and protein sequences.
Nucleic acids research 1999;27(1):44-8.
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1998: Frishman D; Mironov A; Mewes H W; Gelfand M
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.
Nucleic acids research 1998;26(12):2941-7.
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1998: Mewes H W; Hani J; Pfeiffer F; Frishman D
MIPS: a database for protein sequences and complete genomes.
Nucleic acids research 1998;26(1):33-7.
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1998: Frishman D; Heumann K; Lesk A; Mewes H W
Comprehensive, comprehensible, distributed and intelligent databases: current status.
Bioinformatics (Oxford, England) 1998;14(7):551-61.
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1997: Johnston M; Hillier L; Riles L; Albermann K; André B; Ansorge W; Benes V; Brückner M; Delius H; Dubois E; Düsterhöft A; Entian K D; Floeth M; Goffeau A; Hebling U; Heumann K; Heuss-Neitzel D; Hilbert H; Hilger F; Kleine K; Kötter P; Louis E J; Messenguy F; Mewes H W; Hoheisel J D
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII.
Nature 1997;387(6632 Suppl):87-90.
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1997: Mewes H W; Albermann K; Bähr M; Frishman D; Gleissner A; Hani J; Heumann K; Kleine K; Maierl A; Oliver S G; Pfeiffer F; Zollner A
Overview of the yeast genome.
Nature 1997;387(6632 Suppl):7-65.
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1997: Mewes H W; Albermann K; Heumann K; Liebl S; Pfeiffer F
MIPS: a database for protein sequences, homology data and yeast genome information.
Nucleic acids research 1997;25(1):28-30.
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