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David Beck

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TOP 3
David A C Beck; Tijana Glavina Del Rio; Natalia Ivanova; Marina G Kalyuzhnaya; Mary E Lidstrom; Stephanie Malfatti; Susannah Green Tringe; Ludmila Chistoserdova
A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.
Michelle E McCully; David A C Beck; Valerie Daggett
Promiscuous contacts and heightened dynamics increase thermostability in an engineered variant of the engrailed homeodomain.
Michelle E McCully; David A C Beck; Valerie Daggett
Multimolecule test-tube simulations of protein unfolding and aggregation.

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2013: David A C Beck; Tijana Glavina Del Rio; Natalia Ivanova; Marina G Kalyuzhnaya; Mary E Lidstrom; Stephanie Malfatti; Susannah Green Tringe; Ludmila Chistoserdova
A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.
PeerJ 2013;1():e23.
2013: Michelle E McCully; David A C Beck; Valerie Daggett
Promiscuous contacts and heightened dynamics increase thermostability in an engineered variant of the engrailed homeodomain.
Protein engineering, design & selection : PEDS 2013;26(1):35-45.
2012: Michelle E McCully; David A C Beck; Valerie Daggett
Multimolecule test-tube simulations of protein unfolding and aggregation.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(44):17851-6.
2011: David A C Beck; Murray Hackett; Erik L Hendrickson; Marina G Kalyuzhnaya; Mary E Lidstrom; Sujung Lim; Alexey Vorobev; Tiansong Wang; Ludmila Chistoserdova
An integrated proteomics/transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis.
Journal of bacteriology 2011;193(18):4758-65.
2011: Rudesh D Toofanny; Andrew Simms; David A C Beck; Valerie Daggett
Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection.
BMC bioinformatics 2011;12():334.
2011: David S Ojala; David A C Beck; Marina G Kalyuzhnaya
Genetic systems for moderately halo(alkali)philic bacteria of the genus Methylomicrobium.
Methods in enzymology 2011;495():99-118.
2011: Marina G Kalyuzhnaya; David A C Beck; Ludmila Chistoserdova
Functional metagenomics of methylotrophs.
Methods in enzymology 2011;495():81-98.
2010: Erik L Hendrickson; David A C Beck; Tiansong Wang; Mary E Lidstrom; Murray Hackett; Ludmila Chistoserdova
Expressed genome of Methylobacillus flagellatus as defined through comprehensive proteomics and new insights into methylotrophy.
Journal of bacteriology 2010;192(19):4859-67.
2010: Marc Van der Kamp; R Dustin Schaeffer; Amanda L Jonsson; Alexander D Scouras; Andrew Simms; Rudesh D Toofanny; Noah C Benson; Peter C Anderson; Eric D Merkley; Steven Rysavy; Dennis Bromley; David A C Beck; Valerie Daggett
Dynameomics: a comprehensive database of protein dynamics.
Structure (London, England : 1993) 2010;18(4):423-35.
2010: Marina G Kalyuzhnaya; David A C Beck; Dominic Suciu; Alexander Pozhitkov; Mary E Lidstrom; Ludmila Chistoserdova
Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics.
The ISME journal 2010;4(3):388-98.
2008: David A C Beck; Darwin O V Alonso; Daigo Inoyama; Valerie Daggett
The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(34):12259-64.
2008: Nikolai Smolin; Bin Li; David A C Beck; Valerie Daggett
Side-chain dynamics are critical for water permeation through aquaporin-1.
Biophysical journal 2008;95(3):1089-98.
2008: Michelle E McCully; David A C Beck; Valerie Daggett
Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain.
Biochemistry 2008;47(27):7079-89.
2007: David A C Beck; Valerie Daggett
A one-dimensional reaction coordinate for identification of transition states from explicit solvent P(fold)-like calculations.
Biophysical journal 2007;93(10):3382-91.
2007: David A C Beck; George W N White; Valerie Daggett
Exploring the energy landscape of protein folding using replica-exchange and conventional molecular dynamics simulations.
Journal of structural biology 2007;157(3):514-23.
2007: David A C Beck; Brian J Bennion; Darwin O V Alonso; Valerie Daggett
Simulations of macromolecules in protective and denaturing osmolytes: properties of mixed solvent systems and their effects on water and protein structure and dynamics.
Methods in enzymology 2007;428():373-96.
2005: David A C Beck; Roger S Armen; Valerie Daggett
Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides.
Biochemistry 2005;44(2):609-16.
2004: David A C Beck; Valerie Daggett
Methods for molecular dynamics simulations of protein folding/unfolding in solution.
Methods (San Diego, Calif.) 2004;34(1):112-20.
2003: Ryan Day; David A C Beck; Roger S Armen; Valerie Daggett
A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary.
Protein science : a publication of the Protein Society 2003;12(10):2150-60.
2003: David A C Beck; Darwin O V Alonso; Valerie Daggett
A microscopic view of peptide and protein solvation.
Biophysical chemistry 2003;100(1-3):221-37.