Kiyoshi Mizuuchi

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Skoko Dunja; Li Min; Huang Ying; Mizuuchi Michiyo; Cai Mengli; Bradley Christina M; Pease Paul J; Xiao Botao; Marko John F; Craigie Robert; Mizuuchi Kiyoshi
Barrier-to-autointegration factor (BAF) condenses DNA by looping.
Ivanov Vassili; Li Min; Mizuuchi Kiyoshi
Impact of emission anisotropy on fluorescence spectroscopy and FRET distance measurements.
Mizuuchi Michiyo; Rice Phoebe A; Wardle Simon J; Haniford David B; Mizuuchi Kiyoshi
Control of transposase activity within a transpososome by the configuration of the flanking DNA segment of the transposon.

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2009: Skoko Dunja; Li Min; Huang Ying; Mizuuchi Michiyo; Cai Mengli; Bradley Christina M; Pease Paul J; Xiao Botao; Marko John F; Craigie Robert; Mizuuchi Kiyoshi
Barrier-to-autointegration factor (BAF) condenses DNA by looping.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(39):16610-5.
2009: Ivanov Vassili; Li Min; Mizuuchi Kiyoshi
Impact of emission anisotropy on fluorescence spectroscopy and FRET distance measurements.
Biophysical journal 2009;97(3):922-9.
2007: Mizuuchi Michiyo; Rice Phoebe A; Wardle Simon J; Haniford David B; Mizuuchi Kiyoshi
Control of transposase activity within a transpososome by the configuration of the flanking DNA segment of the transposon.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(37):14622-7.
2007: Tan Xin; Mizuuchi Michiyo; Mizuuchi Kiyoshi
DNA transposition target immunity and the determinants of the MuB distribution patterns on DNA.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(35):13925-9.
2004: Greene Eric C; Mizuuchi Kiyoshi
Visualizing the assembly and disassembly mechanisms of the MuB transposition targeting complex.
The Journal of biological chemistry 2004;279(16):16736-43.
2003: Yanagihara Katsuhiko; Mizuuchi Kiyoshi
Progressive structural transitions within Mu transpositional complexes.
Molecular cell 2003;11(1):215-24.
2002: Greene Eric C; Mizuuchi Kiyoshi
Target immunity during Mu DNA transposition. Transpososome assembly and DNA looping enhance MuA-mediated disassembly of the MuB target complex.
Molecular cell 2002;10(6):1367-78.
2002: Hoskins Joel R; Yanagihara Katsuhiko; Mizuuchi Kiyoshi; Wickner Sue
ClpAP and ClpXP degrade proteins with tags located in the interior of the primary sequence.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(17):11037-42.
2002: Yanagihara Katsuhiko; Mizuuchi Kiyoshi
Mismatch-targeted transposition of Mu: a new strategy to map genetic polymorphism.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(17):11317-21.
2002: Greene Eric C; Mizuuchi Kiyoshi
Direct observation of single MuB polymers: evidence for a DNA-dependent conformational change for generating an active target complex.
Molecular cell 2002;9(5):1079-89.
2002: Greene Eric C; Mizuuchi Kiyoshi
Dynamics of a protein polymer: the assembly and disassembly pathways of the MuB transposition target complex.
The EMBO journal 2002;21(6):1477-86.
2001: Mizuuchi M; Mizuuchi K
Conformational isomerization in phage Mu transpososome assembly: effects of the transpositional enhancer and of MuB.
The EMBO journal 2001;20(23):6927-35.
2000: Zheng R; Ghirlando R; Lee M S; Mizuuchi K; Krause M; Craigie R
Barrier-to-autointegration factor (BAF) bridges DNA in a discrete, higher-order nucleoprotein complex.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(16):8997-9002.
2000: Kennedy A K; Haniford D B; Mizuuchi K
Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity.
Cell 2000;101(3):295-305.
1999: Mizuuchi K; Nobbs T J; Halford S E; Adzuma K; Qin J
A new method for determining the stereochemistry of DNA cleavage reactions: application to the SfiI and HpaII restriction endonucleases and to the MuA transposase.
Biochemistry 1999;38(14):4640-8.
1998: Wei S Q; Mizuuchi K; Craigie R
Footprints on the viral DNA ends in moloney murine leukemia virus preintegration complexes reflect a specific association with integrase.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(18):10535-40.
1997: Schumacher S; Clubb R T; Cai M; Mizuuchi K; Clore G M; Gronenborn A M
Solution structure of the Mu end DNA-binding ibeta subdomain of phage Mu transposase: modular DNA recognition by two tethered domains.
The EMBO journal 1997;16(24):7532-41.
1997: Wei S Q; Mizuuchi K; Craigie R
A large nucleoprotein assembly at the ends of the viral DNA mediates retroviral DNA integration.
The EMBO journal 1997;16(24):7511-20.
1997: Yang W; Mizuuchi K
Site-specific recombination in plane view.
Structure (London, England : 1993) 1997;5(11):1401-6.
1997: Clubb R T; Schumacher S; Mizuuchi K; Gronenborn A M; Clore G M
Solution structure of the I gamma subdomain of the Mu end DNA-binding domain of phage Mu transposase.
Journal of molecular biology 1997;273(1):19-25.
1997: Mizuuchi K
Polynucleotidyl transfer reactions in site-specific DNA recombination.
Genes to cells : devoted to molecular & cellular mechanisms 1997;2(1):1-12.
1996: Rice P A; Yang S; Mizuuchi K; Nash H A
Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn.
Cell 1996;87(7):1295-306.
1996: Savilahti H; Mizuuchi K
Mu transpositional recombination: donor DNA cleavage and strand transfer in trans by the Mu transposase.
Cell 1996;85(2):271-80.
1996: van Gent D C; Mizuuchi K; Gellert M
Similarities between initiation of V(D)J recombination and retroviral integration.
Science (New York, N.Y.) 1996;271(5255):1592-4.
1996: Clubb R T; Mizuuchi M; Huth J R; Omichinski J G; Savilahti H; Mizuuchi K; Clore G M; Gronenborn A M
The wing of the enhancer-binding domain of Mu phage transposase is flexible and is essential for efficient transposition.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(3):1146-50.
1995: Mizuuchi M; Baker T A; Mizuuchi K
Assembly of phage Mu transpososomes: cooperative transitions assisted by protein and DNA scaffolds.
Cell 1995;83(3):375-85.
1995: Savilahti H; Rice P A; Mizuuchi K
The phage Mu transpososome core: DNA requirements for assembly and function.
The EMBO journal 1995;14(19):4893-903.
1995: Rice P; Mizuuchi K
Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration.
Cell 1995;82(2):209-20.
1994: Clubb R T; Omichinski J G; Savilahti H; Mizuuchi K; Gronenborn A M; Clore G M
A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase.
Structure (London, England : 1993) 1994;2(11):1041-8.
1993: Baker T A; Mizuuchi M; Savilahti H; Mizuuchi K
Division of labor among monomers within the Mu transposase tetramer.
Cell 1993;74(4):723-33.
1993: Mizuuchi M; Mizuuchi K
Target site selection in transposition of phage Mu.
Cold Spring Harbor symposia on quantitative biology 1993;58():515-23.
1992: Baker T A; Mizuuchi K
DNA-promoted assembly of the active tetramer of the Mu transposase.
Genes & development 1992;6(11):2221-32.
1992: Mizuuchi K
Polynucleotidyl transfer reactions in transpositional DNA recombination.
The Journal of biological chemistry 1992;267(30):21273-6.
1992: Mizuuchi M; Baker T A; Mizuuchi K
Assembly of the active form of the transposase-Mu DNA complex: a critical control point in Mu transposition.
Cell 1992;70(2):303-11.
1992: Mizuuchi K
Transpositional recombination: mechanistic insights from studies of mu and other elements.
Annual review of biochemistry 1992;61():1011-51.
1991: Engelman A; Mizuuchi K; Craigie R
HIV-1 DNA integration: mechanism of viral DNA cleavage and DNA strand transfer.
Cell 1991;67(6):1211-21.
1991: Mizuuchi M; Baker T A; Mizuuchi K
DNase protection analysis of the stable synaptic complexes involved in Mu transposition.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(20):9031-5.
1991: Mizuuchi K; Adzuma K
Inversion of the phosphate chirality at the target site of Mu DNA strand transfer: evidence for a one-step transesterification mechanism.
Cell 1991;66(1):129-40.
1991: Baker T A; Mizuuchi M; Mizuuchi K
MuB protein allosterically activates strand transfer by the transposase of phage Mu.
Cell 1991;65(6):1003-13.
1991: Craigie R; Mizuuchi K; Bushman F D; Engelman A
A rapid in vitro assay for HIV DNA integration.
Nucleic acids research 1991;19(10):2729-34.
1991: Adzuma K; Mizuuchi K
Steady-state kinetic analysis of ATP hydrolysis by the B protein of bacteriophage mu. Involvement of protein oligomerization in the ATPase cycle.
The Journal of biological chemistry 1991;266(10):6159-67.
1989: Hesse J E; Lieber M R; Mizuuchi K; Gellert M
V(D)J recombination: a functional definition of the joining signals.
Genes & development 1989;3(7):1053-61.
1989: Mizuuchi M; Mizuuchi K
Efficient Mu transposition requires interaction of transposase with a DNA sequence at the Mu operator: implications for regulation.
Cell 1989;58(2):399-408.
1989: Adzuma K; Mizuuchi K
Interaction of proteins located at a distance along DNA: mechanism of target immunity in the Mu DNA strand-transfer reaction.
Cell 1989;57(1):41-7.
1989: Lieber M R; Hesse J E; Lewis S; Bosma G C; Rosenberg N; Mizuuchi K; Bosma M J; Gellert M
Abnormal V(D)J recombination in murine severe combined immune deficiency: absence of coding joints and formation of alternative products. Abnormal V(D)J recombination in murine severe combined immune deficiency: absence of coding joints and formation of alternative products.
Current topics in microbiology and immunology 1989;152():69-75.
1988: Lewis S M; Hesse J E; Mizuuchi K; Gellert M
Novel strand exchanges in V(D)J recombination.
Cell 1988;55(6):1099-107.
1988: Lieber M R; Hesse J E; Mizuuchi K; Gellert M
Lymphoid V(D)J recombination: nucleotide insertion at signal joints as well as coding joints.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(22):8588-92.
1988: Lieber M R; Hesse J E; Lewis S; Bosma G C; Rosenberg N; Mizuuchi K; Bosma M J; Gellert M
The defect in murine severe combined immune deficiency: joining of signal sequences but not coding segments in V(D)J recombination.
Cell 1988;55(1):7-16.
1988: Fujiwara T; Mizuuchi K
Retroviral DNA integration: structure of an integration intermediate.
Cell 1988;54(4):497-504.
1988: Adzuma K; Mizuuchi K
Target immunity of Mu transposition reflects a differential distribution of Mu B protein.
Cell 1988;53(2):257-66.
1988: Lieber M R; Hesse J E; Mizuuchi K; Gellert M
Studies of V(D)J recombination with extrachromosomal substrates.
Current topics in microbiology and immunology 1988;137():94-9.
1987: Craigie R; Mizuuchi K
Transposition of Mu DNA: joining of Mu to target DNA can be uncoupled from cleavage at the ends of Mu.
Cell 1987;51(3):493-501.
1987: Lieber M R; Hesse J E; Mizuuchi K; Gellert M
Developmental stage specificity of the lymphoid V(D)J recombination activity.
Genes & development 1987;1(8):751-61.
1987: Hesse J E; Lieber M R; Gellert M; Mizuuchi K
Extrachromosomal DNA substrates in pre-B cells undergo inversion or deletion at immunoglobulin V-(D)-J joining signals.
Cell 1987;49(6):775-83.
1987: Maxwell A; Craigie R; Mizuuchi K
B protein of bacteriophage mu is an ATPase that preferentially stimulates intermolecular DNA strand transfer.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(3):699-703.
1987: Adachi T; Mizuuchi M; Robinson E A; Appella E; O'Dea M H; Gellert M; Mizuuchi K
DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy.
Nucleic acids research 1987;15(2):771-84.
1986: Craigie R; Mizuuchi K
Role of DNA topology in Mu transposition: mechanism of sensing the relative orientation of two DNA segments.
Cell 1986;45(6):793-800.
1986: Mizuuchi M; Weisberg R A; Mizuuchi K
DNA sequence of the control region of phage D108: the N-terminal amino acid sequences of repressor and transposase are similar both in phage D108 and in its relative, phage Mu.
Nucleic acids research 1986;14(9):3813-25.
1986: Saper M A; Eldar H; Mizuuchi K; Nickol J; Appella E; Sussman J L
Crystallization of a DNA tridecamer d(C-G-C-A-G-A-A-T-T-C-G-C-G).
Journal of molecular biology 1986;188(1):111-3.
1986: Mizuuchi K; Craigie R
Mechanism of bacteriophage mu transposition.
Annual review of genetics 1986;20():385-429.
1985: Craigie R; Arndt-Jovin D J; Mizuuchi K
A defined system for the DNA strand-transfer reaction at the initiation of bacteriophage Mu transposition: protein and DNA substrate requirements.
Proceedings of the National Academy of Sciences of the United States of America 1985;82(22):7570-4.
1985: Craigie R; Mizuuchi K
Mechanism of transposition of bacteriophage Mu: structure of a transposition intermediate.
Cell 1985;41(3):867-76.
1985: Mizuuchi M; Mizuuchi K
The extent of DNA sequence required for a functional bacterial attachment site of phage lambda.
Nucleic acids research 1985;13(4):1193-208.
1985: Craigie R; Mizuuchi K
Cloning of the A gene of bacteriophage Mu and purification of its product, the Mu transposase.
The Journal of biological chemistry 1985;260(3):1832-5.
1984: Mizuuchi K
Mechanism of transposition of bacteriophage Mu: polarity of the strand transfer reaction at the initiation of transposition.
Cell 1984;39(2 Pt 1):395-404.
1984: Craigie R; Mizuuchi M; Mizuuchi K
Site-specific recognition of the bacteriophage Mu ends by the Mu A protein.
Cell 1984;39(2 Pt 1):387-94.
1984: Adachi T; Mizuuchi K; Menzel R; Gellert M
DNA sequence and transcription of the region upstream of the E. coli gyrB gene.
Nucleic acids research 1984;12(16):6389-95.
1984: Mizuuchi K; Mizuuchi M; O'Dea M H; Gellert M
Cloning and simplified purification of Escherichia coli DNA gyrase A and B proteins.
The Journal of biological chemistry 1984;259(14):9199-201.
1984: Kemper B; Jensch F; von Depka-Prondzynski M; Fritz H J; Borgmeyer U; Mizuuchi K
Resolution of Holliday structures by endonuclease VII as observed in interactions with cruciform DNA.
Cold Spring Harbor symposia on quantitative biology 1984;49():815-25.
1984: Mizuuchi K; Mizuuchi M; Craigie R
The mechanism of transposition of bacteriophage mu.
Cold Spring Harbor symposia on quantitative biology 1984;49():835-8.
1983: Mizuuchi K
In vitro transposition of bacteriophage Mu: a biochemical approach to a novel replication reaction.
Cell 1983;35(3 Pt 2):785-94.
1983: Gellert M; O'Dea M H; Mizuuchi K
Slow cruciform transitions in palindromic DNA.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(18):5545-9.
1983: Gellert M; Menzel R; Mizuuchi K; O'Dea M H; Friedman D I
Regulation of DNA supercoiling in Escherichia coli.
Cold Spring Harbor symposia on quantitative biology 1983;47 Pt 2():763-7.
1982: Mizuuchi K; Kemper B; Hays J; Weisberg R A
T4 endonuclease VII cleaves holliday structures.
Cell 1982;29(2):357-65.
1982: Mizuuchi K; Mizuuchi M; Gellert M
Cruciform structures in palindromic DNA are favored by DNA supercoiling.
Journal of molecular biology 1982;156(2):229-43.
1981: Fisher L M; Mizuuchi K; O'Dea M H; Ohmori H; Gellert M
Site-specific interaction of DNA gyrase with DNA.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(7):4165-9.
1981: Mizuuchi K; Weisberg R; Enquist L; Mizuuchi M; Buraczynska M; Foeller C; Hsu P L; Ross W; Landy A
Structure and function of the phage lambda att site: size, int-binding sites, and location of the crossover point.
Cold Spring Harbor symposia on quantitative biology 1981;45 Pt 1():429-37.
1981: Nash H A; Mizuuchi K; Enquist L W; Weisberg R A
Strand exchange in lambda integrative recombination: genetics, biochemistry, and models.
Cold Spring Harbor symposia on quantitative biology 1981;45 Pt 1():417-28.
1981: Gellert M; Fisher L M; Ohmori H; O'Dea M H; Mizuuchi K
DNA gyrase: site-specific interactions and transient double-strand breakage of DNA.
Cold Spring Harbor symposia on quantitative biology 1981;45 Pt 1():391-8.
1980: Mizuuchi K; Gellert M; Weisberg R A; Nash H A
Catenation and supercoiling in the products of bacteriophage lambda integrative recombination in vitro.
Journal of molecular biology 1980;141(4):485-94.
1980: Mizuuchi M; Mizuuchi K
Integrative recombination of bacteriophage lambda: extent of the DNA sequence involved in attachment site function.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(6):3220-4.
1980: Mizuuchi K; Fisher L M; O'Dea M H; Gellert M
DNA gyrase action involves the introduction of transient double-strand breaks into DNA.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(4):1847-51.
1979: Gellert M; Mizuuchi K; O'Dea M H; Ohmori H; Tomizawa J
DNA gyrase and DNA supercoiling.
Cold Spring Harbor symposia on quantitative biology 1979;43 Pt 1():35-40.
1979: Mizuuchi K; Mizuuchi M
Integrative recombination of bacteriophage lambda: in vitro study of the intermolecular reaction.
Cold Spring Harbor symposia on quantitative biology 1979;43 Pt 2():1111-4.
1978: Mizuuchi K; O'Dea M H; Gellert M
DNA gyrase: subunit structure and ATPase activity of the purified enzyme.
Proceedings of the National Academy of Sciences of the United States of America 1978;75(12):5960-3.
1978: Mizuuchi K; Gellert M; Nash H A
Involement of supertwisted DNA in integrative recombination of bacteriophage lambda.
Journal of molecular biology 1978;121(3):375-92.
1977: Gellert M; Mizuuchi K; O'Dea M H; Itoh T; Tomizawa J I
Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity.
Proceedings of the National Academy of Sciences of the United States of America 1977;74(11):4772-6.
1977: Shinagawa H; Mizuuchi K; Emmerson P T
Induction of prophage lambda by gamma-rays, mitomycin C and tif; repressor cleavage studied by immunoprecipitation.
Molecular & general genetics : MGG 1977;155(1):87-91.
1976: Gellert M; Mizuuchi K; O'Dea M H; Nash H A
DNA gyrase: an enzyme that introduces superhelical turns into DNA.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(11):3872-6.
1976: Mizuuchi K; Nash H A
Restriction assay for integrative recombination of bacteriophage lambda DNA in vitro: requirement for closed circular DNA substrate.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(10):3524-8.
1976: Shulman M J; Mizuuchi K; Gottesman M M
New att mutants of phage lambda.
Virology 1976;72(1):13-22.
1969: Mizuuchi K; Fukasawa T
Chromosome mobilization in rec-merodiploids of Escherichia coli K12 following infection with bacteriophage lambda.
Virology 1969;39(3):467-81.

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Kiyoshi Mizuuchi

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