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Alfonso Mondragón

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Publications

TOP 3
Alfonso Mondragón
Structural Studies of RNase P.
Ksenia Terekhova; John F Marko; Alfonso Mondragón
Studies of bacterial topoisomerases I and III at the single-molecule level.
Rakhi Rajan; Bhupesh Taneja; Samuel H Wilson; Rajendra Prasad; Alfonso Mondragón
Identification of one of the apurinic/apyrimidinic lyase active sites of topoisomerase V by structural and functional studies.

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All Publications

2013: Alfonso Mondragón
Structural Studies of RNase P.
Annual review of biophysics 2013;42():537-57.
2013: Ksenia Terekhova; John F Marko; Alfonso Mondragón
Studies of bacterial topoisomerases I and III at the single-molecule level.
Biochemical Society transactions 2013;41(2):571-5.
2013: Rakhi Rajan; Bhupesh Taneja; Samuel H Wilson; Rajendra Prasad; Alfonso Mondragón
Identification of one of the apurinic/apyrimidinic lyase active sites of topoisomerase V by structural and functional studies.
Nucleic acids research 2013;41(1):657-66.
2012: Ksenia Terekhova; Kathryn H Gunn; John F Marko; Alfonso Mondragón
Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways.
Nucleic acids research 2012;40(20):10432-40.
2012: Nicholas J Reiter; Amy K Osterman; Alfonso Mondragón
The bacterial ribonuclease P holoenzyme requires specific, conserved residues for efficient catalysis and substrate positioning.
Nucleic acids research 2012;40(20):10384-93.
2012: Mai Yasunaga; Jonathan J Ipsaro; Alfonso Mondragón
Structurally similar but functionally diverse ZU5 domains in human erythrocyte ankyrin.
Journal of molecular biology 2012;417(4):336-50.
2011: Nicholas J Reiter; Clarence W Chan; Alfonso Mondragón
Emerging structural themes in large RNA molecules.
Current opinion in structural biology 2011;21(3):319-26.
2011: Nicole M Baker; Steven Weigand; Sarah Maar-Mathias; Alfonso Mondragón
Solution structures of DNA-bound gyrase.
Nucleic acids research 2011;39(2):755-66.
2010: Nicholas J Reiter; Amy Osterman; Alfredo Torres-Larios; Kerren K Swinger; Tao Pan; Alfonso Mondragón
Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.
Nature 2010;468(7325):784-9.
2010: Rakhi Rajan; Bhupesh Taneja; Alfonso Mondragón
Structures of minimal catalytic fragments of topoisomerase V reveals conformational changes relevant for DNA binding.
Structure (London, England : 1993) 2010;18(7):829-38.
2010: Jonathan J Ipsaro; Sandra L Harper; Troy E Messick; Ronen Marmorstein; Alfonso Mondragón; David W Speicher
Crystal structure and functional interpretation of the erythrocyte spectrin tetramerization domain complex.
Blood 2010;115(23):4843-52.
2010: Asmita Patel; Lyudmila Yakovleva; Stewart Shuman; Alfonso Mondragón
Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site.
Structure (London, England : 1993) 2010;18(6):725-33.
2010: Jonathan J Ipsaro; Alfonso Mondragón
Structural basis for spectrin recognition by ankyrin.
Blood 2010;115(20):4093-101.
2010: Hamsell M Alvarez; Yi Xue; Chandler D Robinson; Mónica A Canalizo-Hernández; Rebecca G Marvin; Rebekah A Kelly; Alfonso Mondragón; James Penner-Hahn; Thomas V O'Halloran
Tetrathiomolybdate inhibits copper trafficking proteins through metal cluster formation.
Science (New York, N.Y.) 2010;327(5963):331-4.
2009: Jonathan J Ipsaro; Lei Huang; Alfonso Mondragón
Structures of the spectrin-ankyrin interaction binding domains.
Blood 2009;113(22):5385-93.
2009: Nicole M Baker; Rakhi Rajan; Alfonso Mondragón
Structural studies of type I topoisomerases.
Nucleic acids research 2009;37(3):693-701.
2007: Bhupesh Taneja; Bernhard Schnurr; Alexei Slesarev; John F Marko; Alfonso Mondragón
Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(37):14670-5.
2007: Anita Changela; Russell J Digate; Alfonso Mondragón
Structural studies of E. coli topoisomerase III-DNA complexes reveal a novel type IA topoisomerase-DNA conformational intermediate.
Journal of molecular biology 2007;368(1):105-18.
2006: Alfredo Torres-Larios; Kerren K Swinger; Tao Pan; Alfonso Mondragón
Structure of ribonuclease P--a universal ribozyme.
Current opinion in structural biology 2006;16(3):327-35.
2006: Nathan J Baird; Narayanan Srividya; Andrey S Krasilnikov; Alfonso Mondragón; Tobin R Sosnick; Tao Pan
Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium.
RNA (New York, N.Y.) 2006;12(4):598-606.
2006: Asmita Patel; Stewart Shuman; Alfonso Mondragón
Crystal structure of a bacterial type IB DNA topoisomerase reveals a preassembled active site in the absence of DNA.
The Journal of biological chemistry 2006;281(9):6030-7.
2006: Bhupesh Taneja; Asmita Patel; Alexei Slesarev; Alfonso Mondragón
Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases.
The EMBO journal 2006;25(2):398-408.
2005: Alfredo Torres-Larios; Kerren K Swinger; Andrey S Krasilnikov; Tao Pan; Alfonso Mondragón
Crystal structure of the RNA component of bacterial ribonuclease P.
Nature 2005;437(7058):584-7.
2005: Anita Changela; Alexandra Martins; Stewart Shuman; Alfonso Mondragón
Crystal structure of baculovirus RNA triphosphatase complexed with phosphate.
The Journal of biological chemistry 2005;280(18):17848-56.
2004: Hideki Kusunoki; George Minasov; Ruby I MacDonald; Alfonso Mondragón
Independent movement, dimerization and stability of tandem repeats of chicken brain alpha-spectrin.
Journal of molecular biology 2004;344(2):495-511.
2004: Andrey S Krasilnikov; Yinghua Xiao; Tao Pan; Alfonso Mondragón
Basis for structural diversity in homologous RNAs.
Science (New York, N.Y.) 2004;306(5693):104-7.
2004: Hideki Kusunoki; Ruby I MacDonald; Alfonso Mondragón
Structural insights into the stability and flexibility of unusual erythroid spectrin repeats.
Structure (London, England : 1993) 2004;12(4):645-56.
2003: Bhupesh Taneja; Sarah Maar; Ludmilla Shuvalova; Frank Collart; Wayne Anderson; Alfonso Mondragón
Structure of the bacillus subtilis YYCN protein: a putative N-acetyltransferase.
Proteins 2003;53(4):950-2.
2003: Kay Perry; Alfonso Mondragón
Structure of a complex between E. coli DNA topoisomerase I and single-stranded DNA.
Structure (London, England : 1993) 2003;11(11):1349-58.
2003: Anita Changela; Kui Chen; Yi Xue; Jackie Holschen; Caryn Outten; Thomas V O'Halloran; Alfonso Mondragón
Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR.
Science (New York, N.Y.) 2003;301(5638):1383-7.
2003: Andrey S Krasilnikov; Alfonso Mondragón
On the occurrence of the T-loop RNA folding motif in large RNA molecules.
RNA (New York, N.Y.) 2003;9(6):640-3.
2003: Andrey S Krasilnikov; Xiaojing Yang; Tao Pan; Alfonso Mondragón
Crystal structure of the specificity domain of ribonuclease P.
Nature 2003;421(6924):760-4.
2003: Anita Changela; Kay Perry; Bhupesh Taneja; Alfonso Mondragón
DNA manipulators: caught in the act.
Current opinion in structural biology 2003;13(1):15-22.
2002: Kay Perry; Alfonso Mondragón
Biochemical characterization of an invariant histidine involved in Escherichia coli DNA topoisomerase I catalysis.
The Journal of biological chemistry 2002;277(15):13237-45.
2001: Anita Changela; Russell J Digate; Alfonso Mondragón
Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule.
Nature 2001;411(6841):1077-81.
2001: Anita Changela; Kiong Ho; A Martins; Stewart Shuman; Alfonso Mondragón
Structure and mechanism of the RNA triphosphatase component of mammalian mRNA capping enzyme.
The EMBO journal 2001;20(10):2575-86.
2001: Zhiyu Li; Alfonso Mondragón; Russell J Digate
The mechanism of type IA topoisomerase-mediated DNA topological transformations.
Molecular cell 2001;7(2):301-7.
2000: Zhiyu Li; Alfonso Mondragón; Hiroshi Hiasa; Kenneth J Marians; Russell J Digate
Identification of a unique domain essential for Escherichia coli DNA topoisomerase III-catalysed decatenation of replication intermediates.
Molecular microbiology 2000;35(4):888-95.
1999: Alfonso Mondragón; Russell J Digate
The structure of Escherichia coli DNA topoisomerase III.
Structure (London, England : 1993) 1999;7(11):1373-83.
1999: H Feinberg; Anita Changela; Alfonso Mondragón
Protein-nucleotide interactions in E. coli DNA topoisomerase I.
Nature structural biology 1999;6(10):961-8.
1999: H Feinberg; Christopher D Lima; Alfonso Mondragón
Conformational changes in E. coli DNA topoisomerase I.
Nature structural biology 1999;6(10):918-22.
1999: Valerie L Grum; D Li; Ruby I MacDonald; Alfonso Mondragón
Structures of two repeats of spectrin suggest models of flexibility.
Cell 1999;98(4):523-35.
1995: Alfonso Mondragón
Unraveling transposition: gamma delta resolvase in complex with DNA.
Structure (London, England : 1993) 1995;3(8):755-8.
1995: A Sharma; Alfonso Mondragón
DNA topoisomerases.
Current opinion in structural biology 1995;5(1):39-47.
1994: A Sharma; R Hanai; Alfonso Mondragón
Crystal structure of the amino-terminal fragment of vaccinia virus DNA topoisomerase I at 1.6 A resolution.
Structure (London, England : 1993) 1994;2(8):767-77.
1994: Christopher D Lima; Alfonso Mondragón
Mechanism of type II DNA topoisomerases: a tale of two gates.
Structure (London, England : 1993) 1994;2(6):559-60.
1994: Christopher D Lima; J C Wang; Alfonso Mondragón
Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I.
Nature 1994;367(6459):138-46.
1993: Christopher D Lima; J C Wang; Alfonso Mondragón
Crystallization of a 67 kDa fragment of Escherichia coli DNA topoisomerase I.
Journal of molecular biology 1993;232(4):1213-6.