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Sean Mooney

Research Profile

Occupations

Computational Biology

Physiology

Genes & Molecular Sequences

Single Nucleotide Polymorphism

Activities & Behaviors

Software

Concepts & Ideas

Chemicals & Drugs

Proteins

Procedures

Co-author Network

Publications

TOP 3
Matthew J Rardin; Birgit Schilling; Dylan J Sorensen; Eric Verdin; Jason M Held; C Ronald Kahn; Biao Li; Sean D Mooney; John C Newman; Michael P Cusack; Bradford W Gibson
Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
Tobias Wittkop; Corey Powell; Nigam H Shah; Emily Teravest; Ari E Berman; Uday S Evani; K Mathew Fleisch; Sean D Mooney
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation.
Bryan A Haines; Kunlin Jin; Sean D Mooney; Botao Peng; Rammohan Rao; Artem Zykovich; Darcy A Davis; David A Greenberg
Comparative protein interactomics of neuroglobin and myoglobin.

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All Publications

2013: Matthew J Rardin; Birgit Schilling; Dylan J Sorensen; Eric Verdin; Jason M Held; C Ronald Kahn; Biao Li; Sean D Mooney; John C Newman; Michael P Cusack; Bradford W Gibson
Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(16):6601-6.
2013: Tobias Wittkop; Corey Powell; Nigam H Shah; Emily Teravest; Ari E Berman; Uday S Evani; K Mathew Fleisch; Sean D Mooney
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation.
BMC bioinformatics 2013;14():53.
2012: Bryan A Haines; Kunlin Jin; Sean D Mooney; Botao Peng; Rammohan Rao; Artem Zykovich; Darcy A Davis; David A Greenberg
Comparative protein interactomics of neuroglobin and myoglobin.
Journal of neurochemistry 2012;123(1):192-8.
2012: Yiqiang Zhao; Sean D Mooney
Functional organization and its implication in evolution of the human protein-protein interaction network.
BMC genomics 2012;13():150.
2011: Yiqiang Zhao; Wyatt T Clark; David N Cooper; Matthew Mort; Predrag Radivojac; Sean D Mooney
Prediction of functional regulatory SNPs in monogenic and complex disease.
Human mutation 2011;32(10):1183-90.
2011: Troy B Hawkins; Jessica Dantzer; Brandon Peters; Mary Dinauer; Keithanne Mockaitis; Sean D Mooney; Kenneth Cornetta
Identifying viral integration sites using SeqMap 2.0.
Bioinformatics (Oxford, England) 2011;27(5):720-2.
2010: Fuxiao Xin; Steven Myers; Yong Fuga Li; David N Cooper; Sean D Mooney; Predrag Radivojac
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.
Bioinformatics (Oxford, England) 2010;26(16):1975-82.
2010: Sean D Mooney; Vidhya G Krishnan; Uday S Evani
Bioinformatic tools for identifying disease gene and SNP candidates.
Methods in molecular biology (Clifton, N.J.) 2010;628():307-19.
2010: Shuyan Li; Lilia M Iakoucheva; Sean D Mooney; Predrag Radivojac
Loss of post-translational modification sites in disease.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2010;():337-47.
2009: M A Sadat; S Dirscherl; Lakshmi Sastry; J Dantzer; Nancy Pech; S Griffin; T Hawkins; Y Zhao; Cecilia N Barese; S Cross; A Orazi; C An; W Scott Goebel; Mervin C Yoder; Xiaoman Li; Manuel Grez; Kenneth Cornetta; Sean D Mooney; Mary C Dinauer
Retroviral vector integration in post-transplant hematopoiesis in mice conditioned with either submyeloablative or ablative irradiation.
Gene therapy 2009;16(12):1452-64.
2009: Jeremy R Sanford; Xin Wang; Matthew Mort; Natalia Vanduyn; David N Cooper; Sean D Mooney; Howard J Edenberg; Yunlong Liu
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.
Genome research 2009;19(3):381-94.
2009: Jake Y Chen; Eunseog Youn; Sean D Mooney
Connecting protein interaction data, mutations, and disease using bioinformatics.
Methods in molecular biology (Clifton, N.J.) 2009;541():449-61.
2008: Yue Si; Anna Pulliam; Yvonne Linka; Samantha Ciccone; Cordula Leurs; Jin Yuan; Olaf Eckermann; Stefan Fruehauf; Sean D Mooney; Helmut Hanenberg; D Wade Clapp
Overnight transduction with foamyviral vectors restores the long-term repopulating activity of Fancc-/- stem cells.
Blood 2008;112(12):4458-65.
2008: Thivaratana Sinthuwiwat; Phanasit Poowasanpetch; Angsana Wongngamrungroj; Somying Promso; Chirayu Auewarakul; Sean D Mooney; Chintana Tocharoentanaphol
High-resolution melting curve analysis for genotyping of common SNP in MTHFR gene using fixed-cell suspension.
Molecular and cellular probes 2008;22(5-6):329-32.
2008: B Peters; S Dirscherl; J Dantzer; J Nowacki; S Cross; Xiaoman Li; Kenneth Cornetta; M C Dinauer; Sean D Mooney
Automated analysis of viral integration sites in gene therapy research using the SeqMap web resource.
Gene therapy 2008;15(18):1294-8.
2008: Predrag Radivojac; Peter H Baenziger; Maricel G Kann; Matthew E Mort; Matthew W Hahn; Sean D Mooney
Gain and loss of phosphorylation sites in human cancer.
Bioinformatics (Oxford, England) 2008;24(16):i241-7.
2008: Predrag Radivojac; Kang Peng; Wyatt T Clark; Brandon J Peters; Amrita Mohan; Sean M Boyle; Sean D Mooney
An integrated approach to inferring gene-disease associations in humans.
Proteins 2008;72(3):1030-7.
2008: Xin Wang; Guohua Wang; Changyu Shen; Lang Li; Xinguo Wang; Sean D Mooney; Howard J Edenberg; Jeremy Sanford; Yunlong Liu
Using RNase sequence specificity to refine the identification of RNA-protein binding regions.
BMC genomics 2008;9 Suppl 1():S17.
2008: Sean D Mooney; Peter H Baenziger
Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group.
Briefings in bioinformatics 2008;9(1):69-74.
2008: Chintana Tocharoentanaphol; Somying Promso; Dianna Zelenika; Tassanee Lowhnoo; Sissades Tongsima; Thanyachai Sura; Wasun Chantratita; Fumihiko MATSUDA; Sean D Mooney; Anavaj Sakuntabhai
Evaluation of resequencing on number of tag SNPs of 13 atherosclerosis-related genes in Thai population.
Journal of human genetics 2008;53(1):74-86.
2008: Arti Singh; Adebayo Olowoyeye; Peter H Baenziger; Jessica Dantzer; Maricel G Kann; Predrag Radivojac; Randy Heiland; Sean D Mooney
MutDB: update on development of tools for the biochemical analysis of genetic variation.
Nucleic acids research 2008;36(Database issue):D815-9.
2007: Russ B Altman; Neal L Benowitz; David Gurwitz; Jeantine E Lunshof; Mary Relling; Jatinder Lamba; Eric D Wieben; Sean D Mooney; Kathleen Giacomini; Scott Weiss; Julie A Johnson; howard mcleod; David A Flockhart; Richard M Weinshilboum; Alan R Shuldiner; Dan Roden; Ronald M Krauss; Mark Ratain
Genetic nondiscrimination legislation: a critical prerequisite for pharmacogenomics data sharing.
Pharmacogenomics 2007;8(5):519.
2007: Eunseog Youn; Brandon Peters; Predrag Radivojac; Sean D Mooney
Evaluation of features for catalytic residue prediction in novel folds.
Protein science : a publication of the Protein Society 2007;16(2):216-26.
2006: Emily G Farrow; Siobhan I Davis; Sean D Mooney; Peter Beighton; Leo Mascarenhas; Yvonne R Gutierrez; Pisit Pitukcheewanont; Kenneth E White
Extended mutational analyses of FGFR1 in osteoglophonic dysplasia.
American journal of medical genetics. Part A 2006;140(5):537-9.
2006: Brandon Peters; Charles Moad; Eunseog Youn; Kris Buffington; Randy Heiland; Sean D Mooney
Identification of similar regions of protein structures using integrated sequence and structure analysis tools.
BMC structural biology 2006;6():4.
2005: Sean D Mooney; Mike Hsin-Ping Liang; Rob DeConde; Russ B Altman
Structural characterization of proteins using residue environments.
Proteins 2005;61(4):741-7.
2005: Tobias E Larsson; Siobhan I Davis; Holly J Garringer; Sean D Mooney; Mohamad S Draman; Michael J Cullen; Kenneth E White
Fibroblast growth factor-23 mutants causing familial tumoral calcinosis are differentially processed.
Endocrinology 2005;146(9):3883-91.
2005: Jessica Dantzer; Charles Moad; Randy Heiland; Sean D Mooney
MutDB services: interactive structural analysis of mutation data.
Nucleic acids research 2005;33(Web Server issue):W311-4.
2005: Tobias E Larsson; Xijie Yu; Siobhan I Davis; Mohamad S Draman; Sean D Mooney; Michael J Cullen; Kenneth E White
A novel recessive mutation in fibroblast growth factor-23 causes familial tumoral calcinosis.
The Journal of clinical endocrinology and metabolism 2005;90(4):2424-7.
2005: Sean D Mooney
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis.
Briefings in bioinformatics 2005;6(1):44-56.
2005: Patricia C Babbitt; Philip Bourne; Sean D Mooney
Introduction to informatics approaches in structural genomics: modeling and representation of function from macromolecular structure.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2005;():319-21.
2003: Sean D Mooney; Russ B Altman
MutDB: annotating human variation with functionally relevant data.
Bioinformatics (Oxford, England) 2003;19(14):1858-60.
2003: Giselle M Knudsen; Clinton R Nishida; Sean D Mooney; Paul R. Ortiz de Montellano
Nitric-oxide synthase (NOS) reductase domain models suggest a new control element in endothelial NOS that attenuates calmodulin-dependent activity.
The Journal of biological chemistry 2003;278(34):31814-24.
2003: Sean D Mooney; Teri E Klein; Russ B Altman; Mark Trifiro; Bruce Gottlieb
A functional analysis of disease-associated mutations in the androgen receptor gene.
Nucleic acids research 2003;31(8):e42.
2002: Sean D Mooney; Teri E Klein
Structural models of osteogenesis imperfecta-associated variants in the COL1A1 gene.
Molecular & cellular proteomics : MCP 2002;1(11):868-75.
2002: Sean D Mooney; Teri E Klein
The functional importance of disease-associated mutation.
BMC bioinformatics 2002;3():24.
2002: Sean D Mooney; Peter A Kollman; Teri E Klein
Conformational preferences of substituted prolines in the collagen triple helix.
Biopolymers 2002;64(2):63-71.
2001: Sean D Mooney; C C Huang; Peter A Kollman; Teri E Klein
Computed free energy differences between point mutations in a collagen-like peptide.
Biopolymers 2001;58(3):347-53.