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David Muddiman

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TOP 3
S Hunter Walker; Amber D Taylor; David C Muddiman
The use of a xylosylated plant glycoprotein as an internal standard accounting for N-linked glycan cleavage and sample preparation variability.
Guillaume Robichaud; Jeremy A Barry; Kenneth P Garrard; David C Muddiman
MSiReader: An Open-Source Interface to View and Analyze High Resolving Power MS Imaging Files on Matlab Platform.
Hsi-Chuan Chen; Joel Ducoste; Emine Gokce; Quanzi Li; Jie Liu; David C Muddiman; Ronald R Sederoff; Rui Shi; Christopher M Shuford; Jina Song; Jack P Wang; Cranos M Williams; Vincent L Chiang
Monolignol pathway 4-coumaric acid:coenzyme A ligases in Populus trichocarpa: novel specificity, metabolic regulation, and simulation of coenzyme A ligation fluxes.

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All Publications

2013: S Hunter Walker; Amber D Taylor; David C Muddiman
The use of a xylosylated plant glycoprotein as an internal standard accounting for N-linked glycan cleavage and sample preparation variability.
Rapid communications in mass spectrometry : RCM 2013;27(12):1354-8.
2013: Guillaume Robichaud; Jeremy A Barry; Kenneth P Garrard; David C Muddiman
MSiReader: An Open-Source Interface to View and Analyze High Resolving Power MS Imaging Files on Matlab Platform.
Journal of the American Society for Mass Spectrometry 2013;24(5):718-21.
2013: Hsi-Chuan Chen; Joel Ducoste; Emine Gokce; Quanzi Li; Jie Liu; David C Muddiman; Ronald R Sederoff; Rui Shi; Christopher M Shuford; Jina Song; Jack P Wang; Cranos M Williams; Vincent L Chiang
Monolignol pathway 4-coumaric acid:coenzyme A ligases in Populus trichocarpa: novel specificity, metabolic regulation, and simulation of coenzyme A ligation fluxes.
Plant physiology 2013;161(3):1501-16.
2013: Irina Koryakina; John McArthur; David C Muddiman; Ewa M Musiol; Shan Randall; Tilmann Weber; Matthew M Draelos; Gavin J Williams
Poly specific trans-acyltransferase machinery revealed via engineered acyl-CoA synthetases.
ACS chemical biology 2013;8(1):200-8.
2013: Kristin H Cochran; Jeremy A Barry; David C Muddiman; David Hinks
Direct analysis of textile fabrics and dyes using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry.
Analytical chemistry 2013;85(2):831-6.
2013: Guillaume Robichaud; Jeremy A Barry; Kenneth P Garrard; David C Muddiman
Infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) imaging source coupled to a FT-ICR mass spectrometer.
Journal of the American Society for Mass Spectrometry 2013;24(1):92-100.
2012: Emine Gokce; Ralph A Dean; William L Franck; Yeonyee Oh; David C Muddiman
In-depth analysis of the Magnaporthe oryzae conidial proteome.
Journal of proteome research 2012;11(12):5827-35.
2012: Prasenjit Sarkar; David C Muddiman; Shan M Randall; Balaji M Rao
Targeted proteomics of the secretory pathway reveals the secretome of mouse embryonic fibroblasts and human embryonic stem cells.
Molecular & cellular proteomics : MCP 2012;11(12):1829-39.
2012: S Hunter Walker; Brandon C Carlisle; David C Muddiman
Systematic comparison of reverse phase and hydrophilic interaction liquid chromatography platforms for the analysis of N-linked glycans.
Analytical chemistry 2012;84(19):8198-206.
2012: Jack P Wang; Cranos M Williams; Hsi-Chuan Chen; Quanzi Li; Ying-Chung Lin; David C Muddiman; Ronald R Sederoff; Christopher M Shuford; Jina Song; Ying-Hsuan Sun; Vincent L Chiang
Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis.
Planta 2012;236(3):795-808.
2012: Christopher M Shuford; Ronald R Sederoff; Vincent L Chiang; David C Muddiman
Peptide production and decay rates affect the quantitative accuracy of protein cleavage isotope dilution mass spectrometry (PC-IDMS).
Molecular & cellular proteomics : MCP 2012;11(9):814-23.
2012: Hans H Maurer; David C Muddiman
High-resolution mass spectrometry.
Analytical and bioanalytical chemistry 2012;403(5):1201-2.
2012: Prasenjit Sarkar; Timothy S Collier; David C Muddiman; Shan M Randall; Balaji M Rao
The subcellular proteome of undifferentiated human embryonic stem cells.
Proteomics 2012;12(3):421-30.
2012: Yeonyee Oh; Angela Shows; William L Franck; Emine Gokce; Sang-Oh Han; David C Muddiman; Ralph A Dean
Polyubiquitin is required for growth, development and pathogenicity in the rice blast fungus Magnaporthe oryzae.
PloS one 2012;7(8):e42868.
2011: Jeremy A Barry; David C Muddiman
Global optimization of the infrared matrix-assisted laser desorption electrospray ionization (IR MALDESI) source for mass spectrometry using statistical design of experiments.
Rapid communications in mass spectrometry : RCM 2011;25(23):3527-36.
2011: Samantha L Blake; David Hinks; David C Muddiman; S Hunter Walker; Keith R Beck
Spectral accuracy and sulfur counting capabilities of the LTQ-FT-ICR and the LTQ-Orbitrap XL for small molecule analysis.
Journal of the American Society for Mass Spectrometry 2011;22(12):2269-75.
2011: Emine Gokce; Ralph A Dean; William L Franck; Christopher M Shuford; David C Muddiman
Evaluation of normalization methods on GeLC-MS/MS label-free spectral counting data to correct for variation during proteomic workflows.
Journal of the American Society for Mass Spectrometry 2011;22(12):2199-208.
2011: Timothy S Collier; Ralph A Dean; Shan M Randall; Balaji M Rao; Prasenjit Sarkar; David C Muddiman
Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression.
Rapid communications in mass spectrometry : RCM 2011;25(17):2524-32.
2011: S Hunter Walker; Bruce M Novak; Januka Budhathoki-Uprety; David C Muddiman
Stable-isotope labeled hydrophobic hydrazide reagents for the relative quantification of N-linked glycans by electrospray ionization mass spectrometry.
Analytical chemistry 2011;83(17):6738-45.
2011: S Hunter Walker; Daniel L Comins; Monica F Enamorado; Laura M Lilley; David C Muddiman
Hydrophobic derivatization of N-linked glycans for increased ion abundance in electrospray ionization mass spectrometry.
Journal of the American Society for Mass Spectrometry 2011;22(8):1309-17.
2011: Genna L Andrews; Adam M Hawkridge; Brigitte L Simons; J Bryce Young; David C Muddiman
Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600).
Analytical chemistry 2011;83(13):5442-6.
2011: Christopher M Shuford; David C Muddiman
Capitalizing on the hydrophobic bias of electrospray ionization through chemical modification in mass spectrometry-based proteomics.
Expert review of proteomics 2011;8(3):317-23.
2011: Genna L Andrews; Ralph A Dean; Adam M Hawkridge; David C Muddiman
Improving proteome coverage on a LTQ-Orbitrap using design of experiments.
Journal of the American Society for Mass Spectrometry 2011;22(4):773-83.
2011: Emine Gokce; Genna L Andrews; Ralph A Dean; David C Muddiman
Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2011;879(9-10):610-4.
2011: David C Muddiman
Retrospective. John Bennett Fenn (1917-2010).
Science (New York, N.Y.) 2011;331(6014):160.
2011: Michael S Bereman; David C Muddiman
N-linked global glycan profiling by nanoLC mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 2011;790():87-97.
2010: Christopher M Shuford; Adam M Hawkridge; John C Burnett; David C Muddiman
Utilizing spectral counting to quantitatively characterize tandem removal of abundant proteins (TRAP) in human plasma.
Analytical chemistry 2010;82(24):10179-85.
2010: Xing-Dong Xu; Hai-Bo Yang; Yao-Rong Zheng; Koushik Ghosh; Matthew M Lyndon; David C Muddiman; Peter J Stang
Self-assembly of dendritic tris(crown ether) hexagons and their complexation with dibenzylammonium cations.
The Journal of organic chemistry 2010;75(21):7373-80.
2010: Timothy S Collier; Prasenjit Sarkar; William L Franck; Balaji M Rao; Ralph A Dean; David C Muddiman
Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics.
Analytical chemistry 2010;82(20):8696-702.
2010: Adam M Hawkridge; Rebecca B Wysocky; James N Petitte; KE Anderson; Paul E Mozdziak; Oscar J Fletcher; Jonathan M Horowitz; David C Muddiman
Measuring the intra-individual variability of the plasma proteome in the chicken model of spontaneous ovarian adenocarcinoma.
Analytical and bioanalytical chemistry 2010;398(2):737-49.
2010: S Hunter Walker; Brian N Papas; Daniel L Comins; David C Muddiman
Interplay of permanent charge and hydrophobicity in the electrospray ionization of glycans.
Analytical chemistry 2010;82(15):6636-42.
2010: Timothy S Collier; Prasenjit Sarkar; Balaji Rao; David C Muddiman
Quantitative top-down proteomics of SILAC labeled human embryonic stem cells.
Journal of the American Society for Mass Spectrometry 2010;21(6):879-89.
2010: R Brent Dixon; David C Muddiman
Study of the ionization mechanism in hybrid laser based desorption techniques.
The Analyst 2010;135(5):880-2.
2010: Haiou Yang; Patrick Gurgel; D Keith Williams; Benjamin G Bobay; John Cavanagh; David C Muddiman; Ruben G Carbonell
Binding site on human immunoglobulin G for the affinity ligand HWRGWV.
Journal of molecular recognition : JMR 2010;23(3):271-82.
2010: Kung-Yen Chang; D Ryan Georgianna; Steffen Heber; Gary A Payne; David C Muddiman
Detection of alternative splice variants at the proteome level in Aspergillus flavus.
Journal of proteome research 2010;9(3):1209-17.
2010: Michael S Bereman; David C Muddiman
The effects of abundant plasma protein depletion on global glycan profiling using nanoLC FT-ICR mass spectrometry.
Analytical and bioanalytical chemistry 2010;396(4):1473-9.
2010: Michael S Bereman; Daniel L Comins; David C Muddiman
Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides.
Chemical communications (Cambridge, England) 2010;46(2):237-9.
2010: Christopher M Shuford; Daniel L Comins; Jerry L Whitten; John C Burnett; David C Muddiman
Improving limits of detection for B-type natriuretic peptide using PC-IDMS: an application of the ALiPHAT strategy.
The Analyst 2010;135(1):36-41.
2009: D Keith Williams; Daniel L Comins; Jerry L Whitten; David C Muddiman
Evaluation of the ALiPHAT method for PC-IDMS and correlation of limits-of-detection with nonpolar surface area.
Journal of the American Society for Mass Spectrometry 2009;20(11):2006-12.
2009: Oscar Alcazar; Adam M Hawkridge; Timothy S Collier; Scott W Cousins; Sanjoy K Bhattacharya; David C Muddiman; Maria E Marin-Castano
Proteomics characterization of cell membrane blebs in human retinal pigment epithelium cells.
Molecular & cellular proteomics : MCP 2009;8(10):2201-11.
2009: Christina A Fields-Zinna; Jason S Sampson; Matthew C Crowe; Joseph B Tracy; Joseph F Parker; Alexander M deNey; David C Muddiman; Royce W Murray
Tandem mass spectrometry of thiolate-protected Au nanoparticles Na(x)Au25(SC2H4Ph)(18-y)(S(C2H4O)5CH3)(y).
Journal of the American Chemical Society 2009;131(38):13844-51.
2009: Thomas P Forbes; R Brent Dixon; David C Muddiman; F Levent Degertekin; Andrei G Fedorov
Characterization of charge separation in the Array of Micromachined UltraSonic Electrospray (AMUSE) ion source for mass spectrometry.
Journal of the American Society for Mass Spectrometry 2009;20(9):1684-7.
2009: Jason S Sampson; David C Muddiman
Atmospheric pressure infrared (10.6 microm) laser desorption electrospray ionization (IR-LDESI) coupled to a LTQ Fourier transform ion cyclotron resonance mass spectrometer.
Rapid communications in mass spectrometry : RCM 2009;23(13):1989-92.
2009: Michael S Bereman; Douglas D Young; Alexander Deiters; David C Muddiman
Development of a robust and high throughput method for profiling N-linked glycans derived from plasma glycoproteins by NanoLC-FTICR mass spectrometry.
Journal of proteome research 2009;8(7):3764-70.
2009: D Keith Williams; Alexander L Kovach; David C Muddiman; Kenneth W Hanck
Utilizing artificial neural networks in MATLAB to achieve parts-per-billion mass measurement accuracy with a fourier transform ion cyclotron resonance mass spectrometer.
Journal of the American Society for Mass Spectrometry 2009;20(7):1303-10.
2009: Hai-Bo Yang; Brian H Northrop; Yao-Rong Zheng; Koushik Ghosh; Matthew M Lyndon; David C Muddiman; Peter J Stang
Synthesis of six-component metallodendrimers via [3 + 3] coordination-driven self-assembly.
The Journal of organic chemistry 2009;74(9):3524-7.
2009: Genna L Andrews; Christopher M Shuford; John C Burnett; Adam M Hawkridge; David C Muddiman
Coupling of a vented column with splitless nanoRPLC-ESI-MS for the improved separation and detection of brain natriuretic peptide-32 and its proteolytic peptides.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2009;877(10):948-54.
2009: Jason S Sampson; Kermit Murray; David C Muddiman
Intact and top-down characterization of biomolecules and direct analysis using infrared matrix-assisted laser desorption electrospray ionization coupled to FT-ICR mass spectrometry.
Journal of the American Society for Mass Spectrometry 2009;20(4):667-73.
2009: R Brent Dixon; Jason S Sampson; David C Muddiman
Generation of multiply charged peptides and proteins by radio frequency acoustic desorption and ionization for mass spectrometric detection.
Journal of the American Society for Mass Spectrometry 2009;20(4):597-600.
2009: D Keith Williams; David C Muddiman
Absolute quantification of C-reactive protein in human plasma derived from patients with epithelial ovarian cancer utilizing protein cleavage isotope dilution mass spectrometry.
Journal of proteome research 2009;8(2):1085-90.
2009: Michael S Bereman; Taufika Islam Williams; David C Muddiman
Development of a nanoLC LTQ orbitrap mass spectrometric method for profiling glycans derived from plasma from healthy, benign tumor control, and epithelial ovarian cancer patients.
Analytical chemistry 2009;81(3):1130-6.
2009: Adam M Hawkridge; David C Muddiman
Mass spectrometry-based biomarker discovery: toward a global proteome index of individuality.
Annual review of analytical chemistry (Palo Alto, Calif.) 2009;2():265-77.
2008: D Keith Williams; M Ashley Chadwick; Taufika Islam Williams; David C Muddiman
Calibration laws based on multiple linear regression applied to matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry.
Journal of mass spectrometry : JMS 2008;43(12):1659-63.
2008: Jason S Sampson; Adam M Hawkridge; David C Muddiman
Construction of a versatile high precision ambient ionization source for direct analysis and imaging.
Journal of the American Society for Mass Spectrometry 2008;19(10):1527-34.
2008: Jason S Sampson; Adam M Hawkridge; David C Muddiman
Development and characterization of an ionization technique for analysis of biological macromolecules: liquid matrix-assisted laser desorption electrospray ionization.
Analytical chemistry 2008;80(17):6773-8.
2008: Taufika Islam Williams; Diana A Saggese; Kristina L Toups; Jennifer L Frahm; Hyun Joo An; Bensheng Li; Carlito B Lebrilla; David C Muddiman
Investigations with O-linked protein glycosylations by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry.
Journal of mass spectrometry : JMS 2008;43(9):1215-23.
2008: D Ryan Georgianna; Adam M Hawkridge; David C Muddiman; Gary A Payne
Temperature-dependent regulation of proteins in Aspergillus flavus: whole organism stable isotope labeling by amino acids.
Journal of proteome research 2008;7(7):2973-9.
2008: R Brent Dixon; Jason S Sampson; Adam M Hawkridge; David C Muddiman
Ambient aerodynamic ionization source for remote analyte sampling and mass spectrometric analysis.
Analytical chemistry 2008;80(13):5266-71.
2008: Timothy S Collier; Adam M Hawkridge; D Ryan Georgianna; Gary A Payne; David C Muddiman
Top-down identification and quantification of stable isotope labeled proteins from Aspergillus flavus using online nano-flow reversed-phase liquid chromatography coupled to a LTQ-FTICR mass spectrometer.
Analytical chemistry 2008;80(13):4994-5001.
2008: Douglas C Caskey; Takuya Yamamoto; Chris Addicott; Richard K Shoemaker; Jaroslav Vacek; Adam M Hawkridge; David C Muddiman; Gregg S Kottas; Josef Michl; Peter J Stang
Coordination-driven face-directed self-assembly of trigonal prisms. Face-based conformational chirality.
Journal of the American Chemical Society 2008;130(24):7620-8.
2008: Taufika Islam Williams; Diana A Saggese; David C Muddiman
Studying O-linked protein glycosylations in human plasma.
Journal of proteome research 2008;7(6):2562-8.
2008: Adam M Hawkridge; David C Muddiman; Denise M Hebulein; Alessandro Cataliotti; John C Burnett
Effect of plasma protein depletion on BNP-32 recovery.
Clinical chemistry 2008;54(5):933-4.
2008: Michael S Bereman; Matthew M Lyndon; R Brent Dixon; David C Muddiman
Mass measurement accuracy comparisons between a double-focusing magnetic sector and a time-of-flight mass analyzer.
Rapid communications in mass spectrometry : RCM 2008;22(10):1563-6.
2008: Koushik Ghosh; Hai-Bo Yang; Brian H Northrop; Matthew M Lyndon; Yao-Rong Zheng; David C Muddiman; Peter J Stang
Coordination-driven self-assembly of cavity-cored multiple crown ether derivatives and poly[2]pseudorotaxanes.
Journal of the American Chemical Society 2008;130(15):5320-34.
2008: D Keith Williams; Corey W Meadows; Ibrahim D Bori; Adam M Hawkridge; Daniel L Comins; David C Muddiman
Synthesis, characterization, and application of iodoacetamide derivatives utilized for the ALiPHAT strategy.
Journal of the American Chemical Society 2008;130(7):2122-3.
2008: Hai-Bo Yang; Koushik Ghosh; Yue Zhao; Brian H Northrop; Matthew M Lyndon; David C Muddiman; Henry S White; Peter J Stang
A new family of multiferrocene complexes with enhanced control of structure and stoichiometry via coordination-driven self-assembly and their electrochemistry.
Journal of the American Chemical Society 2008;130(3):839-41.
2007: Hai-Bo Yang; Koushik Ghosh; Brian H Northrop; Yao-Rong Zheng; Matthew M Lyndon; David C Muddiman; Peter J Stang
A highly efficient approach to the self-assembly of hexagonal cavity-cored tris[2]pseudorotaxanes from several components via multiple noncovalent interactions.
Journal of the American Chemical Society 2007;129(46):14187-9.
2007: Michael S Bereman; Taufika Islam Williams; David C Muddiman
Carbohydrate analysis by desorption electrospray ionization fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 2007;79(22):8812-5.
2007: R Brent Dixon; David C Muddiman; Adam M Hawkridge; A G Fedorov
Probing the mechanisms of an air amplifier using a LTQ-FT-ICR-MS and fluorescence spectroscopy.
Journal of the American Society for Mass Spectrometry 2007;18(11):1909-13.
2007: D Keith Williams; Graeme C McAlister; David Good; Joshua J Coon; David C Muddiman
Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.
Analytical chemistry 2007;79(20):7916-9.
2007: Yuko Ogata; M Cristine Charlesworth; Leeann Higgins; B Mark Keegan; Steven Vernino; David C Muddiman
Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion.
Proteomics 2007;7(20):3726-34.
2007: R Brent Dixon; Michael S Bereman; David C Muddiman; Adam M Hawkridge
Remote mass spectrometric sampling of electrospray- and desorption electrospray-generated ions using an air ejector.
Journal of the American Society for Mass Spectrometry 2007;18(10):1844-7.
2007: Thomas R Hoye; Vadims Dvornikovs; Jared M Fine; Kari R Anderson; Christopher S Jeffrey; David C Muddiman; Feng Shao; Peter W Sorensen; Jizhou Wang
Details of the structure determination of the sulfated steroids PSDS and PADS: new components of the sea lamprey (petromyzon marinus) migratory pheromone.
The Journal of organic chemistry 2007;72(20):7544-50.
2007: Taufika Islam Williams; Kristina L Toups; Diana A Saggese; Kimberly R Kalli; William A Cliby; David C Muddiman
Epithelial ovarian cancer: disease etiology, treatment, detection, and investigational gene, metabolite, and protein biomarkers.
Journal of proteome research 2007;6(8):2936-62.
2007: D Keith Williams; David C Muddiman
Parts-per-billion mass measurement accuracy achieved through the combination of multiple linear regression and automatic gain control in a Fourier transform ion cyclotron resonance mass spectrometer.
Analytical chemistry 2007;79(13):5058-63.
2007: Michael S Bereman; David C Muddiman
Detection of attomole amounts of analyte by desorption electrospray ionization mass spectrometry (DESI-MS) determined using fluorescence spectroscopy.
Journal of the American Society for Mass Spectrometry 2007;18(6):1093-6.
2007: Hai-Bo Yang; Adam M Hawkridge; Songping D Huang; Neeladri Das; Scott D Bunge; David C Muddiman; Peter J Stang
Coordination-driven self-assembly of metallodendrimers possessing well-defined and controllable cavities as cores.
Journal of the American Chemical Society 2007;129(7):2120-9.
2007: Christopher J Mason; Terry M Therneau; Jeanette E Eckel-Passow; Kenneth L Johnson; Ann L Oberg; Janet E Olson; K Sreekumaran Nair; David C Muddiman; H Robert Bergen
A method for automatically interpreting mass spectra of 18O-labeled isotopic clusters.
Molecular & cellular proteomics : MCP 2007;6(2):305-18.
2007: R Brent Dixon; David C Muddiman
Quantitative comparison of a flared and a standard heated metal capillary inlet with a voltage-assisted air amplifier on an electrospray ionization linear ion trap mass spectrometer.
Rapid communications in mass spectrometry : RCM 2007;21(19):3207-12.
2007: Jennifer Frahm; Coral M Capo Velez; David C Muddiman
Understanding the influence of post-excite radius and axial confinement on quantitative proteomic measurements using Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2007;21(7):1196-204.
2007: Jason S Sampson; Adam M Hawkridge; David C Muddiman
Direct characterization of intact polypeptides by matrix-assisted laser desorption electrospray ionization quadrupole Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2007;21(7):1150-4.
2007: Taufika Islam Williams; Diana A Saggese; Robert J Wilcox; James D Martin; David C Muddiman
Effect of matrix crystal structure on ion abundance of carbohydrates by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2007;21(5):807-11.
2007: D Keith Williams; Adam M Hawkridge; David C Muddiman
Sub parts-per-million mass measurement accuracy of intact proteins and product ions achieved using a dual electrospray ionization quadrupole fourier transform ion cyclotron resonance mass spectrometer.
Journal of the American Society for Mass Spectrometry 2007;18(1):1-7.
2006: Yuko Ogata; Carrie J Heppelmann; Carrie J Hepplmann; M Cristine Charlesworth; Benjamin J Madden; Melinda N Miller; Kimberly R Kalli; William A Cilby; H Robert Bergen; Diana A Saggese; David C Muddiman
Elevated levels of phosphorylated fibrinogen-alpha-isoforms and differential expression of other post-translationally modified proteins in the plasma of ovarian cancer patients.
Journal of proteome research 2006;5(12):3318-25.
2006: Jason S Sampson; Adam M Hawkridge; David C Muddiman
Generation and detection of multiply-charged peptides and proteins by matrix-assisted laser desorption electrospray ionization (MALDESI) Fourier transform ion cyclotron resonance mass spectrometry.
Journal of the American Society for Mass Spectrometry 2006;17(12):1712-6.
2006: Hai-Bo Yang; Neeladri Das; Feihe Huang; Adam M Hawkridge; David D Díaz; Atta M Arif; MG Finn; David C Muddiman; Peter J Stang
Incorporation of 2,6-di(4,4'-dipyridyl)-9-thiabicyclo[3.3.1]nonane into discrete 2D supramolecules via coordination-driven self-assembly.
The Journal of organic chemistry 2006;71(17):6644-7.
2006: Hai-Bo Yang; Neeladri Das; Feihe Huang; Adam M Hawkridge; David C Muddiman; Peter J Stang
Molecular architecture via coordination: self-assembly of nanoscale hexagonal metallodendrimers with designed building blocks.
Journal of the American Chemical Society 2006;128(31):10014-5.
2006: Hui Zhou; Benjamin J Madden; David C Muddiman; Zhiguo Zhang
Chromatin assembly factor 1 interacts with histone H3 methylated at lysine 79 in the processes of epigenetic silencing and DNA repair.
Biochemistry 2006;45(9):2852-61.
2006: Jennifer Frahm; Brian E Howard; Steffen Heber; David C Muddiman
Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry.
Journal of mass spectrometry : JMS 2006;41(3):281-8.
2006: David C Muddiman
"Lewis and Clark" proteomics.
Journal of proteome research 2006;5(2):221-2.
2006: Sebyung Kang; Adam M Hawkridge; Kenneth L Johnson; David C Muddiman; Peter E Prevelige
Identification of subunit-subunit interactions in bacteriophage P22 procapsids by chemical cross-linking and mass spectrometry.
Journal of proteome research 2006;5(2):370-7.
2006: Michael S Bereman; Leonard Nyadong; Facundo M Fernandez; David C Muddiman
Direct high-resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2006;20(22):3409-11.
2005: Christopher J Mason; Kenneth L Johnson; David C Muddiman
Reproducibility of retention time using a splitless nanoLC coupled to an ESI-FTICR mass spectrometer.
Journal of biomolecular techniques : JBT 2005;16(4):414-22.
2005: Adam M Hawkridge; Denise M Heublein; H Robert Bergen; Alessandro Cataliotti; John C Burnett; David C Muddiman
Quantitative mass spectral evidence for the absence of circulating brain natriuretic peptide (BNP-32) in severe human heart failure.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(48):17442-7.
2005: Kenneth L Johnson; Inna G Ovsyannikova; Gregory A Poland; David C Muddiman
Identification of class II HLA-DRB1*03-bound measles virus peptides by 2D-liquid chromatography tandem mass spectrometry.
Journal of proteome research 2005;4(6):2243-9.
2005: Kenneth L Johnson; Inna G Ovsyannikova; Benjamin J Madden; Gregory A Poland; David C Muddiman
Accurate mass precursor ion data and tandem mass spectrometry identify a class I human leukocyte antigen A*0201-presented peptide originating from vaccinia virus.
Journal of the American Society for Mass Spectrometry 2005;16(11):1812-7.
2005: Pengxiang Yang; R Graham Cooks; Zheng Ouyang; Adam M Hawkridge; David C Muddiman
Gentle protein ionization assisted by high-velocity gas flow.
Analytical chemistry 2005;77(19):6174-83.
2005: Hershel Jude; Hendrik Disteldorf; Sonja Fischer; Tim Wedge; Adam M Hawkridge; Atta M Arif; M Frederick Hawthorne; David C Muddiman; Peter J Stang
Coordination-driven self-assemblies with a carborane backbone.
Journal of the American Chemical Society 2005;127(34):12131-9.
2005: Michael P Fautsch; Kyle G Howell; Anne M Vrabel; M Cristine Charlesworth; David C Muddiman; Douglas H Johnson
Primary trabecular meshwork cells incubated in human aqueous humor differ from cells incubated in serum supplements.
Investigative ophthalmology & visual science 2005;46(8):2848-56.
2005: David R Barnidge; Diane F Jelinek; David C Muddiman; Neil E Kay
Quantitative protein expression analysis of CLL B cells from mutated and unmutated IgV(H) subgroups using acid-cleavable isotope-coded affinity tag reagents.
Journal of proteome research 2005;4(4):1310-7.
2005: David L Swanson; Mark Pittelkow; Linda M Benson; Adam M Hawkridge; David C Muddiman
Déjà vu all over again: skin cap still contains a high-potency glucocorticosteroid.
Archives of dermatology 2005;141(6):801-3.
2005: David R Barnidge; Renee C Tschumper; Diane F Jelinek; David C Muddiman; Neil E Kay
Protein expression profiling of CLL B cells using replicate off-line strong cation exchange chromatography and LC-MS/MS.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2005;819(1):33-9.
2005: Yuko Ogata; M Cristine Charlesworth; David C Muddiman
Evaluation of protein depletion methods for the analysis of total-, phospho- and glycoproteins in lumbar cerebrospinal fluid.
Journal of proteome research 2005;4(3):837-45.
2005: Jennifer Frahm; David C Muddiman; Michael J Burke
Leveling response factors in the electrospray ionization process using a heated capillary interface.
Journal of the American Society for Mass Spectrometry 2005;16(5):772-8.
2005: David C Muddiman; Ann L Oberg
Statistical evaluation of internal and external mass calibration laws utilized in fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 2005;77(8):2406-14.
2005: Daniel J McCormick; Michael W Holmes; David C Muddiman; Benjamin J Madden
Mapping sites of protein phosphorylation by mass spectrometry utilizing a chemical-enzymatic approach: characterization of products from alpha-S1 casein phosphopeptides.
Journal of proteome research 2005;4(2):424-34.
2005: H Robert Bergen; David C Muddiman; John F O'brien; James D Hoyer
Normalization of relative peptide ratios derived from in-gel digests: applications to protein variant analysis at the peptide level.
Rapid communications in mass spectrometry : RCM 2005;19(19):2871-7.
2005: Jennifer Frahm; David C Muddiman
Nucleic Acid analysis by fourier transform ion cyclotron resonance mass spectrometry at the beginning of the twenty-first century.
Current pharmaceutical design 2005;11(20):2593-613.
2005: Adam M Hawkridge; Angelito I Nepomuceno; Stephanie L Lovik; Christopher J Mason; David C Muddiman
Effect of post-excitation radius on ion abundance, mass measurement accuracy, and isotopic distributions in Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2005;19(7):915-8.
2004: Kenneth L Johnson; Christopher J Mason; David C Muddiman; Jeanette E Eckel
Analysis of the low molecular weight fraction of serum by LC-dual ESI-FT-ICR mass spectrometry: precision of retention time, mass, and ion abundance.
Analytical chemistry 2004;76(17):5097-103.
2004: H Robert Bergen; Steven R Zeldenrust; Malinda L Butz; Denise S Snow; P James B Dyck; P James B Dyck; Christopher J Klein; John F O'brien; Stephen N Thibodeau; David C Muddiman
Identification of transthyretin variants by sequential proteomic and genomic analysis.
Clinical chemistry 2004;50(9):1544-52.
2004: Angelito I Nepomuceno; Christopher J Mason; David C Muddiman; H Robert Bergen; Steven R Zeldenrust
Detection of genetic variants of transthyretin by liquid chromatography-dual electrospray ionization fourier-transform ion-cyclotron-resonance mass spectrometry.
Clinical chemistry 2004;50(9):1535-43.
2004: Adam M Hawkridge; Li Zhou; Milton L Lee; David C Muddiman
Analytical performance of a venturi device integrated into an electrospray ionization fourier transform ion cyclotron resonance mass spectrometer for analysis of nucleic acids.
Analytical chemistry 2004;76(14):4118-22.
2004: David R Barnidge; Gregory D Hall; Jeanne L Stocker; David C Muddiman
Evaluation of a cleavable stable isotope labeled synthetic peptide for absolute protein quantification using LC-MS/MS.
Journal of proteome research 2004;3(3):658-61.
2004: David R Barnidge; Marcia K Goodmanson; George G Klee; David C Muddiman
Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-Ms/MS using protein cleavage and isotope dilution mass spectrometry.
Journal of proteome research 2004;3(3):644-52.
2004: Haojie Huang; David C Muddiman; Donald J Tindall
Androgens negatively regulate forkhead transcription factor FKHR (FOXO1) through a proteolytic mechanism in prostate cancer cells.
The Journal of biological chemistry 2004;279(14):13866-77.
2004: Kenneth L Johnson; David C Muddiman
A method for calculating 16O/18O peptide ion ratios for the relative quantification of proteomes.
Journal of the American Society for Mass Spectrometry 2004;15(4):437-45.
2004: H Robert Bergen; Michael G Klug; Mark E Bolander; David C Muddiman
Informed use of proteolytic inhibitors in biomarker discovery.
Rapid communications in mass spectrometry : RCM 2004;18(9):1001-2.
2004: Jason W Flora; David C Muddiman
Determination of the relative energies of activation for the dissociation of aromatic versus aliphatic phosphopeptides by ESI-FTICR-MS and IRMPD.
Journal of the American Society for Mass Spectrometry 2004;15(1):121-7.
2004: Inna G Ovsyannikova; Kenneth L Johnson; David C Muddiman; Robert A Vierkant; Gregory A Poland
Identification and characterization of novel, naturally processed measles virus class II HLA-DRB1 peptides.
Journal of virology 2004;78(1):42-51.
2003: Yury K Kryschenko; S Russell Seidel; David C Muddiman; Angelito I Nepomuceno; Peter J Stang
Coordination-driven self-assembly of supramolecular cages: heteroatom-containing and complementary trigonal prisms.
Journal of the American Chemical Society 2003;125(32):9647-52.
2003: Inna G Ovsyannikova; Kenneth L Johnson; Stephen Naylor; David C Muddiman; Gregory A Poland
Naturally processed measles virus peptide eluted from class II HLA-DRB1*03 recognized by T lymphocytes from human blood.
Virology 2003;312(2):495-506.
2003: Angelito I Nepomuceno; David C Muddiman; H Robert Bergen; James R Craighead; Michael J Burke; Patrick E Caskey; Jonathan A Allan
Dual electrospray ionization source for confident generation of accurate mass tags using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 2003;75(14):3411-8.
2003: Linda M Benson; Allison P Null; David C Muddiman
Advantages of Thermococcus kodakaraenis (KOD) DNA Polymerase for PCR-mass spectrometry based analyses.
Journal of the American Society for Mass Spectrometry 2003;14(6):601-4.
2003: Allison P Null; Angelito I Nepomuceno; David C Muddiman
Implications of hydrophobicity and free energy of solvation for characterization of nucleic acids by electrospray ionization mass spectrometry.
Analytical chemistry 2003;75(6):1331-9.
2003: H Robert Bergen; George Vasmatzis; William A Cliby; Kenneth L Johnson; Ann L Oberg; David C Muddiman
Discovery of ovarian cancer biomarkers in serum using NanoLC electrospray ionization TOF and FT-ICR mass spectrometry.
Disease markers 2003;19(4-5):239-49.
2003: Allison P Null; Linda M Benson; David C Muddiman
Enzymatic strategies for the characterization of nucleic acids by electrospray ionization mass spectrometry.
Rapid communications in mass spectrometry : RCM 2003;17(24):2699-706.
2003: Allison P Null; David C Muddiman
Determination of a correction to improve mass measurement accuracy of isotopically unresolved polymerase chain reaction amplicons by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2003;17(15):1714-22.
2003: H Robert Bergen; Katalin Ajtai; Thomas P Burghardt; Angelito I Nepomuceno; David C Muddiman
Mass spectral determination of skeletal/cardiac actin isoform ratios in cardiac muscle.
Rapid communications in mass spectrometry : RCM 2003;17(13):1467-71.
2002: Jason W Flora; Allison P Null; David C Muddiman
Dual-micro-ESI source for precise mass determination on a quadrupole time-of-flight mass spectrometer for genomic and proteomic applications.
Analytical and bioanalytical chemistry 2002;373(7):538-46.
2002: Jason W Flora; David C Muddiman
Gas-phase ion unimolecular dissociation for rapid phosphopeptide mapping by IRMPD in a Penning ion trap: an energetically favored process.
Journal of the American Chemical Society 2002;124(23):6546-7.
2002: Allison P Null; Laura T George; David C Muddiman
Evaluation of sample preparation techniques for mass measurements of PCR products using ESI-FT-ICR mass spectrometry.
Journal of the American Society for Mass Spectrometry 2002;13(4):338-44.
2002: John B Mangrum; Jason W Flora; David C Muddiman
Solution composition and thermal denaturation for the production of single-stranded PCR amplicons: piperidine-induced destabilization of the DNA duplex?
Journal of the American Society for Mass Spectrometry 2002;13(3):232-40.
2001: Allison P Null; JC Hannis; David C Muddiman
Genotyping of simple and compound short tandem repeat loci using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 2001;73(18):4514-21.
2001: Jason W Flora; David C Muddiman
Selective, sensitive, and rapid phosphopeptide identification in enzymatic digests using ESI-FTICR-MS with infrared multiphoton dissociation.
Analytical chemistry 2001;73(14):3305-11.
2001: Jason W Flora; David C Muddiman
Complete sequencing of mono-deprotonated peptide nucleic acids by sustained off-resonance irradiation collision-induced dissociation.
Journal of the American Society for Mass Spectrometry 2001;12(7):805-9.
2001: Allison P Null; David C Muddiman
Perspectives on the use of electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for short tandem repeat genotyping in the post-genome era.
Journal of mass spectrometry : JMS 2001;36(6):589-606.
2001: Jason W Flora; JC Hannis; David C Muddiman
High-mass accuracy of product ions produced by SORI-CID using a dual electrospray ionization source coupled with FTICR mass spectrometry.
Analytical chemistry 2001;73(6):1247-51.
2001: S Chen; JC Hannis; Jason W Flora; David C Muddiman; K Charles; Yin Yu; Lawrence F Povirk
Homogeneous preparations of 3'-phosphoglycolate-terminated oligodeoxynucleotides from bleomycin-treated DNA as verified by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Analytical biochemistry 2001;289(2):274-80.
2001: JC Hannis; David C Muddiman
Detection of double-stranded PCR amplicons at the attomole level electrosprayed from low nanomolar solutions using FT-ICR mass spectrometry.
Fresenius' journal of analytical chemistry 2001;369(3-4):246-51.
2001: E F Gordon; David C Muddiman
Impact of ion cloud densities on the measurement of relative ion abundances in Fourier transform ion cyclotron resonance mass spectrometry: experimental observations of coulombically induced cyclotron radius perturbations and ion cloud dephasing rates.
Journal of mass spectrometry : JMS 2001;36(2):195-203.
2001: JC Hannis; David C Muddiman
Genotyping short tandem repeats using flow injection and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 2001;15(5):348-50.
2000: JC Hannis; David C Muddiman
A dual electrospray ionization source combined with hexapole accumulation to achieve high mass accuracy of biopolymers in Fourier transform ion cyclotron resonance mass spectrometry.
Journal of the American Society for Mass Spectrometry 2000;11(10):876-83.
2000: Jason W Flora; Donald D Shillady; David C Muddiman
An experimental and theoretical study of the gas-phase decomposition of monoprotonated peptide nucleic acids.
Journal of the American Society for Mass Spectrometry 2000;11(7):615-25.
2000: Allison P Null; JC Hannis; David C Muddiman
Preparation of single-stranded PCR products for electrospray ionization mass spectrometry using the DNA repair enzyme lambda exonuclease.
The Analyst 2000;125(4):619-26.
1999: M B Kloster; JC Hannis; David C Muddiman; Nicholas Farrell
Consequences of nucleic acid conformation on the binding of a trinuclear platinum drug.
Biochemistry 1999;38(45):14731-7.
1999: E F Gordon; B A Mansoori; C F Carroll; David C Muddiman
Hydropathic influences on the quantification of equine heart cytochrome c using relative ion abundance measurements by electrospray ionization fourier transform ion cyclotron resonance mass spectrometry.
Journal of mass spectrometry : JMS 1999;34(10):1055-62.
1999: Janina P Lewis; J A Dawson; JC Hannis; David C Muddiman; Francis L Macrina
Hemoglobinase activity of the lysine gingipain protease (Kgp) of Porphyromonas gingivalis W83.
Journal of bacteriology 1999;181(16):4905-13.
1999: JC Hannis; David C Muddiman
Accurate characterization of the tyrosine hydroxylase forensic allele 9.3 through development of electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
Rapid communications in mass spectrometry : RCM 1999;13(10):954-62.