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Tom Muir

Research Profile

Physiology

Genes & Molecular Sequences

Amino Acid Sequences

Procedures

Protein Engineering

Concepts & Ideas

Chemicals & Drugs

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Phosphorylation

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Publications

TOP 3
Peter Lewis; Shu Lin; Tom W Muir; Manuel M Müller; Laura A Banaszynski; Oren Josh Becher; Francisco Cordero; Benjamin A Garcia; Matthew S Koletsky; C David Allis
Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.
Neel H Shah; David Cowburn; Ertan Eryilmaz; Tom W Muir
Extein residues play an intimate role in the rate-limiting step of protein trans-splicing.
Scott Barbuto; Gaëlle Breton; Juliana Idoyaga; Maria P Longhi; Ralph M Steinman; Miquel Vila-Perelló; Tom W Muir
Induction of innate and adaptive immunity by delivery of poly dA:dT to dendritic cells.

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All Publications

2013: Peter Lewis; Shu Lin; Tom W Muir; Manuel M Müller; Laura A Banaszynski; Oren Josh Becher; Francisco Cordero; Benjamin A Garcia; Matthew S Koletsky; C David Allis
Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.
Science (New York, N.Y.) 2013;340(6134):857-61.
2013: Neel H Shah; David Cowburn; Ertan Eryilmaz; Tom W Muir
Extein residues play an intimate role in the rate-limiting step of protein trans-splicing.
Journal of the American Chemical Society 2013;135(15):5839-47.
2013: Scott Barbuto; Gaëlle Breton; Juliana Idoyaga; Maria P Longhi; Ralph M Steinman; Miquel Vila-Perelló; Tom W Muir
Induction of innate and adaptive immunity by delivery of poly dA:dT to dendritic cells.
Nature chemical biology 2013;9(4):250-6.
2013: Miquel Vila-Perelló; John A Willis; Juliana Idoyaga; Zhihua Liu; Neel H Shah; Tom W Muir
Streamlined expressed protein ligation using split inteins.
Journal of the American Chemical Society 2013;135(1):286-92.
2012: Beat Fierz; Aaron R Hieb; Sinan Kilic; Karolin Luger; Tom W Muir
Stability of nucleosomes containing homogenously ubiquitylated H2A and H2B prepared using semisynthesis.
Journal of the American Chemical Society 2012;134(48):19548-51.
2012: Neel H Shah; Miquel Vila-Perelló; Geoffrey P Dann; Zhihua Liu; Tom W Muir
Ultrafast protein splicing is common among cyanobacterial split inteins: implications for protein engineering.
Journal of the American Chemical Society 2012;134(28):11338-41.
2012: Zachary Z Brown; Tom W Muir
From EPOthilone to EPO: Aa challenge for natural product synthesis.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(19):7134-5.
2012: Beat Fierz; Tom W Muir
Chromatin as an expansive canvas for chemical biology.
Nature chemical biology 2012;8(5):417-27.
2012: Jung-Min Kee; Tom W Muir
Chasing phosphohistidine, an elusive sibling in the phosphoamino acid family.
ACS chemical biology 2012;7(1):44-51.
2011: Neel H Shah; Miquel Vila-Perelló; Tom W Muir
Kinetic control of one-pot trans-splicing reactions by using a wild-type and designed split intein.
Angewandte Chemie (International ed. in English) 2011;50(29):6511-5.
2011: Alexander J Ruthenburg; Haitao Li; Thomas A Milne; Scott Dewell; Robert K McGinty; Melanie Yuen; Beatrix Ueberheide; Yali Dou; Tom W Muir; Dinshaw J Patel; C David Allis
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions.
Cell 2011;145(5):692-706.
2011: Beat Fierz; Champak Chatterjee; Robert K McGinty; Maya Bar-Dagan; Daniel P Raleigh; Tom W Muir
Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction.
Nature chemical biology 2011;7(2):113-9.
2011: C David Allis; Tom W Muir
Spreading chromatin into chemical biology.
Chembiochem : a European journal of chemical biology 2011;12(2):264-79.
2010: Peter M Moyle; Tom W Muir
Method for the synthesis of mono-ADP-ribose conjugated peptides.
Journal of the American Chemical Society 2010;132(45):15878-80.
2010: Jung-Min Kee; Bryeanna Villani; Laura R Carpenter; Tom W Muir
Development of stable phosphohistidine analogues.
Journal of the American Chemical Society 2010;132(41):14327-9.
2010: Miquel Vila-Perelló; Tom W Muir
Biological applications of protein splicing.
Cell 2010;143(2):191-200.
2010: Silvia Frutos; Michael Goger; Baldissera Giovani; David Cowburn; Tom W Muir
Branched intermediate formation stimulates peptide bond cleavage in protein splicing.
Nature chemical biology 2010;6(7):527-33.
2010: Champak Chatterjee; Tom W Muir
Chemical approaches for studying histone modifications.
The Journal of biological chemistry 2010;285(15):11045-50.
2010: Champak Chatterjee; Robert K McGinty; Beat Fierz; Tom W Muir
Disulfide-directed histone ubiquitylation reveals plasticity in hDot1L activation.
Nature chemical biology 2010;6(4):267-9.
2009: Robert K McGinty; Maja Köhn; Champak Chatterjee; Kyle P Chiang; Matthew R Pratt; Tom W Muir
Structure-activity analysis of semisynthetic nucleosomes: mechanistic insights into the stimulation of Dot1L by ubiquitylated histone H2B.
ACS chemical biology 2009;4(11):958-68.
2009: Elizabeth A George Cisar; Edward Geisinger; Tom W Muir; Richard P Novick
Symmetric signalling within asymmetric dimers of the Staphylococcus aureus receptor histidine kinase AgrC.
Molecular microbiology 2009;74(1):44-57.
2009: Matthew R. Pratt; Matthew D Sekedat; Kyle P. Chiang; Tom W Muir
Direct measurement of cathepsin B activity in the cytosol of apoptotic cells by an activity-based probe.
Chemistry & biology 2009;16(9):1001-12.
2009: Kyle P. Chiang; Mette S Jensen; Robert K McGinty; Tom W Muir
A semisynthetic strategy to generate phosphorylated and acetylated histone H2B.
Chembiochem : a European journal of chemical biology 2009;10(13):2182-7.
2009: Giovanni Ceccarini; Robert R Flavell; Eduardo R Butelman; Michael Synan; Thomas E Willnow; Maya Bar-Dagan; Stanley J Goldsmith; Mary J Kreek; Paresh Kothari; Shankar Vallabhajosula; Tom W Muir; Jeffrey M Friedman
PET imaging of leptin biodistribution and metabolism in rodents and primates.
Cell metabolism 2009;10(2):148-59.
2009: Steve W Lockless; Tom W Muir
Traceless protein splicing utilizing evolved split inteins.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(27):10999-1004.
2009: Jaehoon Kim; Mohamed Guermah; Robert K McGinty; Jung-Shin Lee; Zhanyun Tang; Thomas A Milne; Ali Shilatifard; Tom W Muir; Robert G Roeder
RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells.
Cell 2009;137(3):459-71.
2009: Tom W Muir
Chemical biology in a time of transition.
ACS chemical biology 2009;4(4):241-3.
2009: Robert R Flavell; Tom W Muir
Expressed protein ligation (EPL) in the study of signal transduction, ion conduction, and chromatin biology.
Accounts of chemical research 2009;42(1):107-16.
2009: Robert K McGinty; Champak Chatterjee; Tom W Muir
Semisynthesis of ubiquitylated proteins.
Methods in enzymology 2009;462():225-43.
2008: Edmund C Schwartz; Alexander Shekhtman; Kaushik Dutta; Matthew R. Pratt; David Cowburn; Seth A Darst; Tom W Muir
A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding.
Chemistry & biology 2008;15(10):1091-103.
2008: Robert R Flavell; Paresh Kothari; Maya Bar-Dagan; Michael Synan; Shankar Vallabhajosula; Jeffrey M Friedman; Tom W Muir; Giovanni Ceccarini
Site-specific (18)F-labeling of the protein hormone leptin using a general two-step ligation procedure.
Journal of the American Chemical Society 2008;130(28):9106-12.
2008: Robert K McGinty; Jaehoon Kim; Champak Chatterjee; Robert G Roeder; Tom W Muir
Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation.
Nature 2008;453(7196):812-6.
2008: Elizabeth A George; Richard novick; Tom W Muir
Cyclic peptide inhibitors of staphylococcal virulence prepared by Fmoc-based thiolactone peptide synthesis.
Journal of the American Chemical Society 2008;130(14):4914-24.
2008: Edward Geisinger; Elizabeth A George; Tom W Muir; John Chen; Richard novick
Identification of ligand specificity determinants in AgrC, the Staphylococcus aureus quorum-sensing receptor.
The Journal of biological chemistry 2008;283(14):8930-8.
2008: Amy B Tyszkiewicz; Tom W Muir
Activation of protein splicing with light in yeast.
Nature methods 2008;5(4):303-5.
2008: Kyle P. Chiang; Tom W Muir
Systems- and molecular-level elucidation of signaling processes through chemistry.
Science signaling 2008;1(42):pe45.
2008: Tom W Muir
Studying protein structure and function using semisynthesis.
Biopolymers 2008;90(6):743-50.
2008: Miquel Vila-Perelló; Yuichiro Hori; Marc Ribo; Tom W Muir
Activation of protein splicing by protease- or light-triggered O to N acyl migration.
Angewandte Chemie (International ed. in English) 2008;47(40):7764-7.
2008: Jennifer J Ottesen; Maya Bar-Dagan; Baldissera Giovani; Tom W Muir
An amalgamation of solid phase peptide synthesis and ribosomal peptide synthesis.
Biopolymers 2008;90(3):406-14.
2007: Michael E Hahn; Jean-Philippe Pellois; Miquel Vila-Perelló; Tom W Muir
Tunable photoactivation of a post-translationally modified signaling protein and its unmodified counterpart in live cells.
Chembiochem : a European journal of chemical biology 2007;8(17):2100-5.
2007: Miquel Vila-Perelló; Matthew R. Pratt; Frej Tulin; Tom W Muir
Covalent capture of phospho-dependent protein oligomerization by site-specific incorporation of a diazirine photo-cross-linker.
Journal of the American Chemical Society 2007;129(26):8068-9.
2007: Matthew R. Pratt; Edmund C Schwartz; Tom W Muir
Small-molecule-mediated rescue of protein function by an inducible proteolytic shunt.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(27):11209-14.
2007: Elizabeth A George; Tom W Muir
Molecular mechanisms of agr quorum sensing in virulent staphylococci.
Chembiochem : a European journal of chemical biology 2007;8(8):847-55.
2007: Champak Chatterjee; Robert K McGinty; Jean-Philippe Pellois; Tom W Muir
Auxiliary-mediated site-specific peptide ubiquitylation.
Angewandte Chemie (International ed. in English) 2007;46(16):2814-8.
2007: Edmund C Schwartz; Lino Saez; Michael W Young; Tom W Muir
Post-translational enzyme activation in an animal via optimized conditional protein splicing.
Nature chemical biology 2007;3(1):50-4.
2006: Francis I Valiyaveetil; Manuel Leonetti; Tom W Muir; Roderick MacKinnon
Ion selectivity in a semisynthetic K+ channel locked in the conductive conformation.
Science (New York, N.Y.) 2006;314(5801):1004-7.
2006: Jean-Philippe Pellois; Tom W Muir
Semisynthetic proteins in mechanistic studies: using chemistry to go where nature can't.
Current opinion in chemical biology 2006;10(5):487-91.
2006: Francis I Valiyaveetil; Matthew Sekedat; Roderick MacKinnon; Tom W Muir
Structural and functional consequences of an amide-to-ester substitution in the selectivity filter of a potassium channel.
Journal of the American Chemical Society 2006;128(35):11591-9.
2006: Vasant Muralidharan; Kaushik Dutta; Jaehyun Cho; Miquel Vila-Perello; Daniel P Raleigh; David Cowburn; Tom W Muir
Solution structure and folding characteristics of the C-terminal SH3 domain of c-Crk-II.
Biochemistry 2006;45(29):8874-84.
2006: Vasant Muralidharan; Tom W Muir
Protein ligation: an enabling technology for the biophysical analysis of proteins.
Nature methods 2006;3(6):429-38.
2005: Tom W Muir
2005 Irving Sigal Young Investigator Award.
Protein science : a publication of the Protein Society 2005;14(12):3140-4.
2005: Jean-Philippe Pellois; Tom W Muir
A ligation and photorelease strategy for the temporal and spatial control of protein function in living cells.
Angewandte Chemie (International ed. in English) 2005;44(35):5713-7.
2005: Jianxin Shi; Tom W Muir
Development of a tandem protein trans-splicing system based on native and engineered split inteins.
Journal of the American Chemical Society 2005;127(17):6198-206.
2005: Michael E Hahn; Tom W Muir
Manipulating proteins with chemistry: a cross-section of chemical biology.
Trends in biochemical sciences 2005;30(1):26-34.
2004: Francis I Valiyaveetil; Matthew Sekedat; Roderick MacKinnon; Tom W Muir
Glycine as a D-amino acid surrogate in the K(+)-selectivity filter.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(49):17045-9.
2004: Jesse S Wright; Gholson J Lyon; Elizabeth A George; Tom W Muir; Richard novick
Hydrophobic interactions drive ligand-receptor recognition for activation and inhibition of staphylococcal quorum sensing.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(46):16168-73.
2004: Michael E Hahn; Tom W Muir
Photocontrol of Smad2, a multiphosphorylated cell-signaling protein, through caging of activating phosphoserines.
Angewandte Chemie (International ed. in English) 2004;43(43):5800-3.
2004: Vasant Muralidharan; Jaehyun Cho; Michelle Trester-Zedlitz; Lukasz Kowalik; Brian T Chait; Daniel P Raleigh; Tom W Muir
Domain-specific incorporation of noninvasive optical probes into recombinant proteins.
Journal of the American Chemical Society 2004;126(43):14004-12.
2004: Henning D Mootz; Elyse S Blum; Tom W Muir
Activation of an autoregulated protein kinase by conditional protein splicing.
Angewandte Chemie (International ed. in English) 2004;43(39):5189-92.
2004: Jean-Philippe Pellois; Michael E Hahn; Tom W Muir
Simultaneous triggering of protein activity and fluorescence.
Journal of the American Chemical Society 2004;126(23):7170-1.
2004: Jennifer J Ottesen; Morgan Huse; Matthew Sekedat; Tom W Muir
Semisynthesis of phosphovariants of Smad2 reveals a substrate preference of the activated T beta RI kinase.
Biochemistry 2004;43(19):5698-706.
2004: Francis I Valiyaveetil; Matthew Sekedat; Tom W Muir; Roderick MacKinnon
Semisynthesis of a functional K+ channel.
Angewandte Chemie (International ed. in English) 2004;43(19):2504-7.
2004: Alessandra Romanelli; Alexander Shekhtman; David Cowburn; Tom W Muir
Semisynthesis of a segmental isotopically labeled protein splicing precursor: NMR evidence for an unusual peptide bond at the N-extein-intein junction.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(17):6397-402.
2004: David Cowburn; Alexander Shekhtman; Rong Xu; Jennifer J Ottesen; Tom W Muir
Segmental isotopic labeling for structural biological applications of NMR.
Methods in molecular biology (Clifton, N.J.) 2004;278():47-56.
2003: Gholson J Lyon; Tom W Muir
Chemical signaling among bacteria and its inhibition.
Chemistry & biology 2003;10(11):1007-21.
2003: Tom W Muir
Turning virulence on and off in staphylococci.
Journal of peptide science : an official publication of the European Peptide Society 2003;9(10):612-9.
2003: Edmund C Schwartz; Tom W Muir; Amy B Tyszkiewicz
"The splice is right": how protein splicing is opening new doors in protein science.
Chemical communications (Cambridge, England) 2003;(17):2087-90.
2003: Henning D Mootz; Elyse S Blum; Amy B Tyszkiewicz; Tom W Muir
Conditional protein splicing: a new tool to control protein structure and function in vitro and in vivo.
Journal of the American Chemical Society 2003;125(35):10561-9.
2003: Izabela Giriat; Tom W Muir
Protein semi-synthesis in living cells.
Journal of the American Chemical Society 2003;125(24):7180-1.
2003: Michelle Trester-Zedlitz; Katsuhiko Kamada; Stephen K Burley; David Fenyö; Brian T Chait; Tom W Muir
A modular cross-linking approach for exploring protein interactions.
Journal of the American Chemical Society 2003;125(9):2416-25.
2003: Justin S Miller; Vadim Y Dudkin; Gholson J Lyon; Tom W Muir; Samuel J Danishefsky
Toward fully synthetic N-linked glycoproteins.
Angewandte Chemie (International ed. in English) 2003;42(4):431-4.
2003: Tom W Muir
Semisynthesis of proteins by expressed protein ligation.
Annual review of biochemistry 2003;72():249-89.
2002: Francis I Valiyaveetil; Roderick MacKinnon; Tom W Muir
Semisynthesis and folding of the potassium channel KcsA.
Journal of the American Chemical Society 2002;124(31):9113-20.
2002: Henning D Mootz; Tom W Muir
Protein splicing triggered by a small molecule.
Journal of the American Chemical Society 2002;124(31):9044-5.
2002: Gholson J Lyon; Jesse S Wright; Tom W Muir; Richard novick
Key determinants of receptor activation in the agr autoinducing peptides of Staphylococcus aureus.
Biochemistry 2002;41(31):10095-104.
2002: Roseanne M Hofmann; Tom W Muir
Recent advances in the application of expressed protein ligation to protein engineering.
Current opinion in biotechnology 2002;13(4):297-303.
2002: Julio A Camarero; Alexander Shekhtman; Elizabeth A Campbell; Mark Chlenov; Tanja M Gruber; Donald A Bryant; Seth A Darst; David Cowburn; Tom W Muir
Autoregulation of a bacterial sigma factor explored by using segmental isotopic labeling and NMR.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(13):8536-41.
2002: Gholson J Lyon; Jesse S Wright; Arthur Christopoulos; Richard novick; Tom W Muir
Reversible and specific extracellular antagonism of receptor-histidine kinase signaling.
The Journal of biological chemistry 2002;277(8):6247-53.
2002: Robert R Flavell; Morgan Huse; Mike Goger; Michelle Trester-Zedlitz; John Kuriyan; Tom W Muir
Efficient semisynthesis of a tetraphosphorylated analogue of the Type I TGFbeta receptor.
Organic letters 2002;4(2):165-8.
2001: R M Hofmann; GJ Cotton; Emmanuel J Chang; E Vidal; Darren R Veach; William G Bornmann; Tom W Muir
Fluorescent monitoring of kinase activity in real time: development of a robust fluorescence-based assay for Abl tyrosine kinase activity.
Bioorganic & medicinal chemistry letters 2001;11(24):3091-4.
2001: Jia-Wei Wu; Min Hu; Jijie Chai; J Seoane; Morgan Huse; C Li; Daniel J Rigotti; Saw Kyin; Tom W Muir; Robert Fairman; Joan Massagué; Yigong Shi
Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signaling.
Molecular cell 2001;8(6):1277-89.
2001: Morgan Huse; Tom W Muir; Lan Xu; Y G Chen; John Kuriyan; Joan Massagué
The TGF beta receptor activation process: an inhibitor- to substrate-binding switch.
Molecular cell 2001;8(3):671-82.
2001: Julio A Camarero; David Fushman; David Cowburn; Tom W Muir
Peptide chemical ligation inside living cells: in vivo generation of a circular protein domain.
Bioorganic & medicinal chemistry 2001;9(9):2479-84.
2001: Julio A Camarero; David Fushman; S Sato; Izabela Giriat; David Cowburn; D P Raleigh; Tom W Muir
Rescuing a destabilized protein fold through backbone cyclization.
Journal of molecular biology 2001;308(5):1045-62.
2001: Julio A Camarero; Tom W Muir
Native chemical ligation of polypeptides.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2001;Chapter 18():Unit18.4.
2001: L Minakhin; Julio A Camarero; M Holford; C Parker; Tom W Muir; Konstantin Severinov
Mapping the molecular interface between the sigma(70) subunit of E. coli RNA polymerase and T4 AsiA.
Journal of molecular biology 2001;306(4):631-42.
2001: Izabela Giriat; Tom W Muir; F B Perler
Protein splicing and its applications.
Genetic engineering 2001;23():171-99.
2001: David Cowburn; Tom W Muir
Segmental isotopic labeling using expressed protein ligation.
Methods in enzymology 2001;339():41-54.
2000: Gholson J Lyon; P Mayville; Tom W Muir; Richard novick
Rational design of a global inhibitor of the virulence response in Staphylococcus aureus, based in part on localization of the site of inhibition to the receptor-histidine kinase, AgrC.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(24):13330-5.
2000: GJ Cotton; Tom W Muir
Generation of a dual-labeled fluorescence biosensor for Crk-II phosphorylation using solid-phase expressed protein ligation.
Chemistry & biology 2000;7(4):253-61.
2000: U K Blaschke; J Silberstein; Tom W Muir
Protein engineering by expressed protein ligation.
Methods in enzymology 2000;328():478-96.
1999: GJ Cotton; Tom W Muir
Peptide ligation and its application to protein engineering.
Chemistry & biology 1999;6(9):R247-56.
1999: P Mayville; G Ji; Ronald C Beavis; Hua Yang; Mike Goger; Richard novick; Tom W Muir
Structure-activity analysis of synthetic autoinducing thiolactone peptides from Staphylococcus aureus responsible for virulence.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(4):1218-23.
1999: R Xu; B Ayers; David Cowburn; Tom W Muir
Chemical ligation of folded recombinant proteins: segmental isotopic labeling of domains for NMR studies.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(2):388-93.
1999: B Ayers; U K Blaschke; Julio A Camarero; GJ Cotton; M Holford; Tom W Muir
Introduction of unnatural amino acids into proteins using expressed protein ligation.
Biopolymers 1999;51(5):343-54.
1998: M Holford; Tom W Muir
Adding 'splice' to protein engineering.
Structure (London, England : 1993) 1998;6(8):951-6.
1998: Tom W Muir; D Sondhi; Philip A Cole
Expressed protein ligation: a general method for protein engineering.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(12):6705-10.
1998: Julio A Camarero; B Ayers; Tom W Muir
Studying receptor-ligand interactions using encoded amino acid scanning.
Biochemistry 1998;37(20):7487-95.
1998: Julio A Camarero; GJ Cotton; A Adeva; Tom W Muir
Chemical ligation of unprotected peptides directly from a solid support.
The journal of peptide research : official journal of the American Peptide Society 1998;51(4):303-16.
1997: Tom W Muir; P E Dawson; MC Fitzgerald; S B Kent
Protein signature analysis: a practical new approach for studying structure-activity relationships in peptides and proteins.
Methods in enzymology 1997;289():545-64.
1997: Tom W Muir; P E Dawson; S B Kent
Protein synthesis by chemical ligation of unprotected peptides in aqueous solution.
Methods in enzymology 1997;289():266-98.
1996: Y Zhao; Tom W Muir; S B Kent; E Tischer; J M Scardina; Brian T Chait
Mapping protein-protein interactions by affinity-directed mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(9):4020-4.