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Kazutaka Murayama

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Kazutaka Murayama; Kota Kano; Yusaku Matsumoto; Daisuke Sugimori
Crystal structure of phospholipase A1 from Streptomyces albidoflavus NA297.
Naomi Ohbayashi; Hiroki Shima; Kimiko Watanabe; Youhei Yamagata; Akihito Yamano; Masafumi Goto; Kazuhiko Igarashi; Yasutake Katoh; Takashi Matsumoto; Kazutaka Murayama
Solution structure of clostridial collagenase H and its calcium-dependent global conformation change.
Kazutaka Murayama; Ryogo Akasaka; Miyuki Kato-Murayama; Takaho Terada; Shigeyuki Yokoyama; Mikako Shirouzu
Structure of the Rho-specific guanine nucleotide-exchange factor Xpln.

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All Publications

2013: Kazutaka Murayama; Kota Kano; Yusaku Matsumoto; Daisuke Sugimori
Crystal structure of phospholipase A1 from Streptomyces albidoflavus NA297.
Journal of structural biology 2013;182(2):192-6.
2013: Naomi Ohbayashi; Hiroki Shima; Kimiko Watanabe; Youhei Yamagata; Akihito Yamano; Masafumi Goto; Kazuhiko Igarashi; Yasutake Katoh; Takashi Matsumoto; Kazutaka Murayama
Solution structure of clostridial collagenase H and its calcium-dependent global conformation change.
Biophysical journal 2013;104(7):1538-45.
2012: Kazutaka Murayama; Ryogo Akasaka; Miyuki Kato-Murayama; Takaho Terada; Shigeyuki Yokoyama; Mikako Shirouzu
Structure of the Rho-specific guanine nucleotide-exchange factor Xpln.
Acta crystallographica. Section F, Structural biology and crystallization communications 2012;68(Pt 12):1455-9.
2012: Kazutaka Murayama; Kazunari Arima; Toshiaki Hosaka; Miyuki Kato-Murayama; Ami Sotokawauchi; Shigeyuki Yokoyama; Mikako Shirouzu
Crystal structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L.
Journal of molecular biology 2012;423(3):386-96.
2011: Ella Czarina Morishita; Kazutaka Murayama; Mikako Shirouzu; Takaho Terada; Yuri Tomabechi; Tetsu Akiyama; Noriko Handa; Tomoatsu Hayashi; Yoshiko Ishizuka-Katsura; Miyuki Kato-Murayama; Shigeyuki Yokoyama
Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of Sam68.
Structure (London, England : 1993) 2011;19(10):1496-508.
2010: Alexander K Goroncy; Kazutaka Murayama; Mikako Shirouzu; Seiki Kuramitsu; Takanori Kigawa; Shigeyuki Yokoyama
NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes.
Journal of structural and functional genomics 2010;11(4):247-56.
2009: Kazutaka Murayama; Sanae Nakayama; Miyuki Kato-Murayama; Ryogo Akasaka; Naomi Ohbayashi; Yuki Kamewari-Hayami; Takaho Terada; Mikako Shirouzu; Tatsuya Tsurumi; Shigeyuki Yokoyama
Crystal structure of epstein-barr virus DNA polymerase processivity factor BMRF1.
The Journal of biological chemistry 2009;284(51):35896-905.
2009: Ryoichi Arai; Kazutaka Murayama; Tomomi Uchikubo-Kamo; Madoka Nishimoto; Mitsutoshi Toyama; Seiki Kuramitsu; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
Journal of structural biology 2009;168(3):575-81.
2009: Toshiaki Hosaka; Kazutaka Murayama; Miyuki Kato-Murayama; Akiko Urushibata; Ryogo Akasaka; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 8):767-76.
2009: Hongfei Wang; Chie Takemoto; Ryogo Akasaka; Tomomi Uchikubo-Kamo; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Sumio Sugano; Akiko Tanaka; Makoto Inoue; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator.
Journal of structural biology 2009;166(1):32-7.
2009: Kensaku Sakamoto; Kazutaka Murayama; Kenji Oki; Fumie Iraha; Miyuki Kato-Murayama; Masahiro Takahashi; Kazumasa Ohtake; Takatsugu Kobayashi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography.
Structure (London, England : 1993) 2009;17(3):335-44.
2009: Nobutoshi Ito; Miki Watanabe-Matsui; Kazuhiko Igarashi; Kazutaka Murayama
Crystal structure of the Bach1 BTB domain and its regulation of homodimerization.
Genes to cells : devoted to molecular & cellular mechanisms 2009;14(2):167-78.
2008: Kazutaka Murayama; Miyuki Kato-Murayama; Chiemi Mishima; Ryogo Akasaka; Mikako Shirouzu; Yasuhisa Fukui; Shigeyuki Yokoyama
Crystal structure of the Bruton's tyrosine kinase PH domain with phosphatidylinositol.
Biochemical and biophysical research communications 2008;377(1):23-8.
2008: Seiichiro Kishishita; Katsumi Shimizu; Kazutaka Murayama; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama; Naoki Kunishima
Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 4):397-406.
2007: Shaun K Olsen; Naruhisa Ota; Seiichiro Kishishita; Mutsuko Kukimoto-Niino; Kazutaka Murayama; Hidemi Uchiyama; Mitsutoshi Toyama; Takaho Terada; Mikako Shirouzu; Osami Kanagawa; Shigeyuki Yokoyama
Crystal Structure of the interleukin-15.interleukin-15 receptor alpha complex: insights into trans and cis presentation.
The Journal of biological chemistry 2007;282(51):37191-204.
2007: Yong Xie; Chie Takemoto; Seiichiro Kishishita; Tomomi Uchikubo-Kamo; Kazutaka Murayama; Lirong Chen; Zhi Jie Liu; Bi-Cheng Wang; Miho Manzoku; Akio Ebihara; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 12):993-7.
2007: Yoshitaka Bessho; Rie Shibata; Shun-ichi Sekine; Kazutaka Murayama; Kyoko Higashijima; Chie Hori-Takemoto; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(20):8293-8.
2007: Sean connell; Chie Takemoto; Daniel N Wilson; Hongfei Wang; Kazutaka Murayama; Takaho Terada; Mikako Shirouzu; Maximilian Rost; Martin Schüler; Jan Giesebrecht; Marylena Dabrowski; Thorsten Mielke; Paola Fucini; Shigeyuki Yokoyama; Christian M T Spahn
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.
Molecular cell 2007;25(5):751-64.
2007: Kazutaka Murayama; Mikako Shirouzu; Yoshihiro Kawasaki; Miyuki Kato-Murayama; Kyoko Hanawa-Suetsugu; Ayako Sakamoto; Yasuhiro Katsura; Atsushi Suenaga; Mitsutoshi Toyama; Takaho Terada; Makoto Taiji; Tetsu Akiyama; Shigeyuki Yokoyama
Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism.
The Journal of biological chemistry 2007;282(7):4238-42.
2006: Noriko Handa; Mutsuko Kukimoto-Niino; Ryogo Akasaka; Kazutaka Murayama; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Akiko Tanaka; Yoshihide Hayashizaki; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of the UNC5H2 death domain.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 12):1502-9.
2006: Shiro Suetsugu; Kazutaka Murayama; Ayako Sakamoto; Kyoko Hanawa-Suetsugu; Azusa Seto; Tsukasa Oikawa; Chiemi Mishima; Mikako Shirouzu; Tadaomi Takenawa; Shigeyuki Yokoyama
The RAC binding domain/IRSp53-MIM homology domain of IRSp53 induces RAC-dependent membrane deformation.
The Journal of biological chemistry 2006;281(46):35347-58.
2006: Mutsuko Kukimoto-Niino; Tetsuo Takagi; Ryogo Akasaka; Kazutaka Murayama; Tomomi Uchikubo-Kamo; Takaho Terada; Makoto Inoue; Satoru Watanabe; Akiko Tanaka; Yoshihide Hayashizaki; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the RUN domain of the RAP2-interacting protein x.
The Journal of biological chemistry 2006;281(42):31843-53.
2006: Noriko Handa; Mutsuko Kukimoto-Niino; Ryogo Akasaka; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Makoto Inoue; Takanori Kigawa; Shingo Kose; Naoko Imamoto; Akiko Tanaka; Yoshihide Hayashizaki; Mikako Shirouzu; Shigeyuki Yokoyama
The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain.
Journal of molecular biology 2006;363(1):114-24.
2006: Motoyuki Hattori; Eiichi Mizohata; Ayako Tatsuguchi; Rie Shibata; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.
Proteins 2006;64(1):284-7.
2006: Mitsuo Kuratani; Hiroaki Sakai; Masahiro Takahashi; Tatsuo Yanagisawa; Takatsugu Kobayashi; Kazutaka Murayama; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Chizu Kuroishi; Seiki Kuramitsu; Takaho Terada; Yoshitaka Bessho; Mikako Shirouzu; Shun-ichi Sekine; Shigeyuki Yokoyama
Crystal structures of tyrosyl-tRNA synthetases from Archaea.
Journal of molecular biology 2006;355(3):395-408.
2005: Motoyuki Hattori; Eiichi Mizohata; Miho Manzoku; Yoshitaka Bessho; Kazutaka Murayama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8.
Proteins 2005;61(4):1117-20.
2005: Eiichi Mizohata; Hiroaki Sakai; Emiko Fusatomi; Takaho Terada; Kazutaka Murayama; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of an archaeal peroxiredoxin from the aerobic hyperthermophilic crenarchaeon Aeropyrum pernix K1.
Journal of molecular biology 2005;354(2):317-29.
2005: Augen A Pioszak; Kazutaka Murayama; Noriko Nakagawa; Akio Ebihara; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 10):867-74.
2005: Mutsuko Kukimoto-Niino; Rie Shibata; Kazutaka Murayama; Hiroaki Hamana; Madoka Nishimoto; Yoshitaka Bessho; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution.
Protein science : a publication of the Protein Society 2005;14(3):823-7.
2005: Kazutaka Murayama; Mikako Shirouzu; Takaho Terada; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of TT1662 from Thermus thermophilus HB8: a member of the alpha/beta hydrolase fold enzymes.
Proteins 2005;58(4):982-4.
2005: Kazutaka Murayama; Miyuki Kato-Murayama; Kazushige Katsura; Tomomi Uchikubo-Kamo; Machiko Yamaguchi-Hirafuji; Masahito Kawazoe; Ryogo Akasaka; Kyoko Hanawa-Suetsugu; Chie Hori-Takemoto; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 1):26-9.
2005: Azusa Seto; Kazutaka Murayama; Mitsutoshi Toyama; Akio Ebihara; Noriko Nakagawa; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8.
Proteins 2005;58(1):235-42.
2004: Mutsuko Kukimoto-Niino; Kazutaka Murayama; Miyuki Kato-Murayama; Miki Idaka; Yoshitaka Bessho; Ayako Tatsuguchi; Ryoko Ushikoshi-Nakayama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2004;13(11):3038-42.
2004: Hongfei Wang; Chie Takemoto; Kazutaka Murayama; Hiroaki Sakai; Ayako Tatsuguchi; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2004;13(10):2806-10.
2004: Mutsuko Kukimoto-Niino; Kazutaka Murayama; Mio Inoue; Takaho Terada; Jeremy R H Tame; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.
Journal of molecular biology 2004;337(3):761-70.
2003: Azusa Seto; Mikako Shirouzu; Takaho Terada; Kazutaka Murayama; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution.
Proteins 2003;53(3):768-71.
2003: Miyuki Kato; Mikako Shirouzu; Takaho Terada; Hiroto Yamaguchi; Kazutaka Murayama; Hiroaki Sakai; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8.
Journal of molecular biology 2003;329(5):903-11.