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Garib Murshudov

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TOP 3
Robbie P Joosten; Garib N Murshudov; Krista Joosten; Anastassis Perraks
PDB_REDO: constructive validation, more than just looking for errors.
Andrey A Lebedev; Olga V Moroz; Alexei A Vagin; Paul Young; Michail N Isupov; Garib N Murshudov
JLigand: a graphical tool for the CCP4 template-restraint library.
Robert A Nicholls; Fei Long; Garib N Murshudov
Low-resolution refinement tools in REFMAC5.

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All Publications

2012: Robbie P Joosten; Garib N Murshudov; Krista Joosten; Anastassis Perraks
PDB_REDO: constructive validation, more than just looking for errors.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 4):484-96.
2012: Andrey A Lebedev; Olga V Moroz; Alexei A Vagin; Paul Young; Michail N Isupov; Garib N Murshudov
JLigand: a graphical tool for the CCP4 template-restraint library.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 4):431-40.
2012: Robert A Nicholls; Fei Long; Garib N Murshudov
Low-resolution refinement tools in REFMAC5.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 4):404-17.
2012: Przemyslaw J Porebski; Alexei Savchenko; Xiaohui Xu; Garib N Murshudov; Krzysztof Murzyn; Robert A Nicholls; Maksymilian Chruszcz; Marianne E Cuff; Marcin Cymborowski; Aled Edwards; Maria Klimecka; Wladek Minor
Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
The FEBS journal 2012;279(6):1093-105.
2011: Aleksandra A Watson; Angelina S Palma; Gavin Screaton; Alexei A Vagin; Wanwisa Dejnirattisai; Ten Feizi; James Felce; Angharad E Fenton-May; Benjamin Andrew Hall; Andrey A Lebedev; Yan Liu; Juthathip Mongkolsapaya; Garib N Murshudov; Christopher A O'Callaghan
Structural flexibility of the macrophage dengue virus receptor CLEC5A: implications for ligand binding and signaling.
The Journal of biological chemistry 2011;286(27):24208-18.
2011: Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Neesh Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
REFMAC5 for the refinement of macromolecular crystal structures.
Acta crystallographica. Section D, Biological crystallography 2011;67(Pt 4):355-67.
2011: Ronan M Keegan; Fei Long; Vincent J Fazio; Martyn D Winn; Garib N Murshudov; Alexei A Vagin
Evaluating the solution from MrBUMP and BALBES.
Acta crystallographica. Section D, Biological crystallography 2011;67(Pt 4):313-23.
2011: Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Neesh Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Overview of the CCP4 suite and current developments.
Acta crystallographica. Section D, Biological crystallography 2011;67(Pt 4):235-42.
2009: Pavol Skubák; Garib N Murshudov; Neesh Pannu
A multivariate likelihood SIRAS function for phasing and model refinement.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 10):1051-61.
2009: Wijnand T M Mooij; Serge X Cohen; Krista Joosten; Garib N Murshudov; Anastassis Perraks
"Conditional Restraints": Restraining the Free Atoms in ARP/wARP.
Structure (London, England : 1993) 2009;17(2):183-9.
2008: Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
BALBES: a molecular-replacement pipeline.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 1):125-32.
2008: Peter H Zwart; Ralf W Grosse-Kunstleve; Andrey A Lebedev; Garib N Murshudov; Paul D Adams
Surprises and pitfalls arising from (pseudo)symmetry.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 1):99-107.
2008: Serge X Cohen; Marouane Ben Jelloul; Fei Long; Alexei A Vagin; Puck Knipscheer; Joyce H G Lebbink; Titia K Sixma; Victor S Lamzin; Garib N Murshudov; Anastassis Perraks
ARP/wARP and molecular replacement: the next generation.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 1):49-60.
2008: Andrey A Lebedev; Alexei A Vagin; Garib N Murshudov
Model preparation in MOLREP and examples of model improvement using X-ray data.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 1):33-9.
2006: Mohammad W Bahar; C Ballard; Serge X Cohen; Kevin Cowtan; Eleanor J Dodson; Paul Emsley; Robert M Esnouf; R Keegan; Victor S Lamzin; Gerrit G Langer; Vladimir M Levdikov; Fei Long; C Meier; Axel Muller; Garib N Murshudov; Anastassis Perraks; Christian Siebold; N Stein; M G W Turkenburg; Alexei A Vagin; Martyn D Winn; G Winter; Keith S Wilson
SPINE workshop on automated X-ray analysis: a progress report.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 10):1170-83.
2006: Andrey A Lebedev; Alexei A Vagin; Garib N Murshudov
Intensity statistics in twinned crystals with examples from the PDB.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 1):83-95.
2005: Claudia Schnick; Mark A Robien; Andrzej M Brzozowski; Eleanor J Dodson; Garib N Murshudov; Lori Anderson; Joseph Luft; Christopher Mehlin; Wim G J Hol; James A Brannigan; Anthony J Wilkinson
Structures of Plasmodium falciparum purine nucleoside phosphorylase complexed with sulfate and its natural substrate inosine.
Acta crystallographica. Section D, Biological crystallography 2005;61(Pt 9):1245-54.
2005: Núria Valls; Roberto A Steiner; Glenford Wright; Garib N Murshudov; Juan A Subirana
Variable role of ions in two drug intercalation complexes of DNA.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2005;10(5):476-82.
2004: Liz Potterton; Stuart McNicholas; Evgeny Krissinel; Jan Gruber; Kevin Cowtan; Paul Emsley; Garib N Murshudov; Serge Cohen; Anastassis Perraks; Martin Noble
Developments in the CCP4 molecular-graphics project.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 12 Pt 1):2288-94.
2004: Pavol Skubák; Garib N Murshudov; Neesh Pannu
Direct incorporation of experimental phase information in model refinement.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 12 Pt 1):2196-201.
2004: Alexei A Vagin; Roberto A Steiner; Andrey A Lebedev; Liz Potterton; Stuart McNicholas; Fei Long; Garib N Murshudov
REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 12 Pt 1):2184-95.
2004: Michail N Isupov; Amanda A Brindley; Edward Hollingsworth; Garib N Murshudov; Alexei A Vagin; Jennifer A Littlechild
Crystallization and preliminary X-ray diffraction studies of a fungal hydrolase from Ophiostoma novo-ulmi.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 10):1879-82.
2004: Núria Valls; Glenford Wright; Roberto A Steiner; Garib N Murshudov; Juan A Subirana
DNA variability in five crystal structures of d(CGCAATTGCG).
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 4):680-5.
2003: Roberto A Steiner; Andrey A Lebedev; Garib N Murshudov
Fisher's information in maximum-likelihood macromolecular crystallographic refinement.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 12):2114-24.
2003: Martyn D Winn; Garib N Murshudov; Miroslav Z Papiz
Macromolecular TLS refinement in REFMAC at moderate resolutions.
Methods in enzymology 2003;374():300-21.
2002: Garib N Murshudov; Albina I Grebenko; James A Brannigan; Alfred A Antson; Vladimir V Barynin; Guy G Dodson; Zbigniew Dauter; Keith S Wilson; William Melik-Adamyan
The structures of Micrococcus lysodeikticus catalase, its ferryl intermediate (compound II) and NADPH complex.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 12):1972-82.
2002: Valérie M-A Ducros; David L Zechel; Garib N Murshudov; Harry J Gilbert; Lóránd Szabó; Dominik Stoll; Stephen G Withers; Gideon J Davies
Substrate distortion by a beta-mannanase: snapshots of the Michaelis and covalent-intermediate complexes suggest a B(2,5) conformation for the transition state.
Angewandte Chemie (International ed. in English) 2002;41(15):2824-7.
2002: Andrzej M Brzozowski; Eleanor J Dodson; Guy G Dodson; Garib N Murshudov; chandra verma; Johan P Turkenburg; Frederik M de Bree; Zbigniew Dauter
Structural origins of the functional divergence of human insulin-like growth factor-I and insulin.
Biochemistry 2002;41(30):9389-97.
2001: PR Seavers; Richard J Lewis; James A Brannigan; Koen H G Verschueren; Garib N Murshudov; Anthony J Wilkinson
Structure of the Bacillus cell fate determinant SpoIIAA in phosphorylated and unphosphorylated forms.
Structure (London, England : 1993) 2001;9(7):605-14.
2001: Roberto A Steiner; Henriëtte J Rozeboom; A de Vries; Kor H Kalk; Garib N Murshudov; K S Wilson; Bauke W Dijkstra
X-ray structure of bovine pancreatic phospholipase A2 at atomic resolution.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 4):516-26.
2001: Valérie M-A Ducros; Richard J Lewis; chandra verma; Eleanor J Dodson; G Leonard; Johan P Turkenburg; Garib N Murshudov; Anthony J Wilkinson; James A Brannigan
Crystal structure of GerE, the ultimate transcriptional regulator of spore formation in Bacillus subtilis.
Journal of molecular biology 2001;306(4):759-71.
2001: Martyn D Winn; Michail N Isupov; Garib N Murshudov
Use of TLS parameters to model anisotropic displacements in macromolecular refinement.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 1):122-33.
2001: Olga V Moroz; Alfred A Antson; Garib N Murshudov; Norman J Maitland; Guy G Dodson; Keith S Wilson; I Skibshøj; EM Lukanidin; Igor Bronstein
The three-dimensional structure of human S100A12.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 1):20-9.
2000: L Hewitt; Volker Kasche; K Lummer; Richard J Lewis; Garib N Murshudov; chandra verma; Guy G Dodson; Keith S Wilson
Structure of a slow processing precursor penicillin acylase from Escherichia coli reveals the linker peptide blocking the active-site cleft.
Journal of molecular biology 2000;302(4):887-98.
2000: Michail N Isupov; Andrew R Dalby; Amanda A Brindley; Yoshikazu Izumi; T Tanabe; Garib N Murshudov; Jennifer A Littlechild
Crystal structure of dodecameric vanadium-dependent bromoperoxidase from the red algae Corallina officinalis.
Journal of molecular biology 2000;299(4):1035-49.
2000: E Sabini; H Schubert; Garib N Murshudov; Keith S Wilson; M Siika-Aho; Merja Penttilä
The three-dimensional structure of a Trichoderma reesei beta-mannanase from glycoside hydrolase family 5.
Acta crystallographica. Section D, Biological crystallography 2000;56(Pt 1):3-13.
1999: Camillo Rosano; E Sabini; M Rizzi; D Deriu; Garib N Murshudov; M Bianchi; G Serafini; M Magnani; M Bolognesi
Binding of non-catalytic ATP to human hexokinase I highlights the structural components for enzyme-membrane association control.
Structure (London, England : 1993) 1999;7(11):1427-37.
1999: Koen H G Verschueren; R Tyrrell; Garib N Murshudov; Eleanor J Dodson; Anthony J Wilkinson
Solution of the structure of the cofactor-binding fragment of CysB: a struggle against non-isomorphism.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 2):369-78.
1999: Garib N Murshudov; Alexei A Vagin; A Lebedev; Keith S Wilson; Eleanor J Dodson
Efficient anisotropic refinement of macromolecular structures using FFT.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 1):247-55.
1998: Szymon Krzywda; Garib N Murshudov; Andrzej M Brzozowski; Mariusz Jaskolski; EE Scott; S A Klizas; Quentin H Gibson; John S Olson; Anthony J Wilkinson
Stabilizing bound O2 in myoglobin by valine68 (E11) to asparagine substitution.
Biochemistry 1998;37(45):15896-907.
1998: Neesh Pannu; Garib N Murshudov; Eleanor J Dodson; Randy J Read
Incorporation of prior phase information strengthens maximum-likelihood structure refinement.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 6 Pt 2):1285-94.
1998: Eleanor J Dodson; Gideon J Davies; Victor S Lamzin; Garib N Murshudov; Keith S Wilson
Validation tools: can they indicate the information content of macromolecular crystal structures?
Structure (London, England : 1993) 1998;6(6):685-90.
1998: Koen H G Verschueren; R Tyrrell; Eleanor J Dodson; Garib N Murshudov; C Addy; Anthony J Wilkinson
An unexpected symmetry in the LysR-type transcriptional activator, CysB.
General physiology and biophysics 1998;17 Suppl 1():43-6.
1997: R Tyrrell; Koen H G Verschueren; Eleanor J Dodson; Garib N Murshudov; C Addy; Anthony J Wilkinson
The structure of the cofactor-binding fragment of the LysR family member, CysB: a familiar fold with a surprising subunit arrangement.
Structure (London, England : 1993) 1997;5(8):1017-32.
1997: Garib N Murshudov; Alexei A Vagin; Eleanor J Dodson
Refinement of macromolecular structures by the maximum-likelihood method.
Acta crystallographica. Section D, Biological crystallography 1997;53(Pt 3):240-55.
1996: Garib N Murshudov; A I Grebenko; V Barynin; Zbigniew Dauter; Keith S Wilson; B K Vainshtein; W Melik-Adamyan; J Bravo; J M Ferrán; J C Ferrer; Jack Switala; Peter C Loewen; Ignacio Fita
Structure of the heme d of Penicillium vitale and Escherichia coli catalases.
The Journal of biological chemistry 1996;271(15):8863-8.
1995: Jeremy R H Tame; Eleanor J Dodson; Garib N Murshudov; C F Higgins; Anthony J Wilkinson
The crystal structures of the oligopeptide-binding protein OppA complexed with tripeptide and tetrapeptide ligands.
Structure (London, England : 1993) 1995;3(12):1395-406.
1994: G Lange; S J Lewis; Garib N Murshudov; Guy G Dodson; P C Moody; J P Turkenburg; A Neil Barclay; R L Brady
Crystal structure of an extracellular fragment of the rat CD4 receptor containing domains 3 and 4.
Structure (London, England : 1993) 1994;2(6):469-81.
1994: Jeremy R H Tame; Garib N Murshudov; Eleanor J Dodson; T K Neil; Guy G Dodson; C F Higgins; Anthony J Wilkinson
The structural basis of sequence-independent peptide binding by OppA protein.
Science (New York, N.Y.) 1994;264(5165):1578-81.
1992: Garib N Murshudov; W R Melik-Adamyan; A I Grebenko; V V Barynin; Alexei A Vagin; B K Vainshtein; Zbigniew Dauter; Keith S Wilson
Three-dimensional structure of catalase from Micrococcus lysodeikticus at 1.5 A resolution.
FEBS letters 1992;312(2-3):127-31.