Mark Musen

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Noy Natalya F; Shah Nigam H; Whetzel Patricia L; Dai Benjamin; Dorf Michael; Griffith Nicholas; Jonquet Clement; Rubin Daniel L; Storey Margaret-Anne; Chute Christopher G; Musen Mark A
BioPortal: ontologies and integrated data resources at the click of a mouse.
Shah Nigam H; Bhatia Nipun; Jonquet Clement; Rubin Daniel; Chiang Annie P; Musen Mark A
Comparison of concept recognizers for building the Open Biomedical Annotator.
Rubin Daniel L; Talos Ion-Florin; Halle Michael; Musen Mark A; Kikinis Ron
Computational neuroanatomy: ontology-based representation of neural components and connectivity.

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All Publications

2009: Noy Natalya F; Shah Nigam H; Whetzel Patricia L; Dai Benjamin; Dorf Michael; Griffith Nicholas; Jonquet Clement; Rubin Daniel L; Storey Margaret-Anne; Chute Christopher G; Musen Mark A
BioPortal: ontologies and integrated data resources at the click of a mouse.
Nucleic acids research 2009;37(Web Server issue):W170-3.
2009: Shah Nigam H; Bhatia Nipun; Jonquet Clement; Rubin Daniel; Chiang Annie P; Musen Mark A
Comparison of concept recognizers for building the Open Biomedical Annotator.
BMC bioinformatics 2009;10 Suppl 9():S14.
2009: Rubin Daniel L; Talos Ion-Florin; Halle Michael; Musen Mark A; Kikinis Ron
Computational neuroanatomy: ontology-based representation of neural components and connectivity.
BMC bioinformatics 2009;10 Suppl 2():S3.
2009: Shah Nigam H; Jonquet Clement; Chiang Annie P; Butte Atul J; Chen Rong; Musen Mark A
Ontology-driven indexing of public datasets for translational bioinformatics.
BMC bioinformatics 2009;10 Suppl 2():S1.
2008: Buckeridge David L; Okhmatovskaia Anna; Tu Samson; O'Connor Martin; Nyulas Csongor; Musen Mark A
Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms.
Journal of the American Medical Informatics Association : JAMIA 2008;15(6):760-9.
2008: Supekar Kaustubh; Menon Vinod; Rubin Daniel; Musen Mark; Greicius Michael D
Network analysis of intrinsic functional brain connectivity in Alzheimer's disease.
PLoS computational biology 2008;4(6):e1000100.
2008: Talos Ion-Florin; Rubin Daniel L; Halle Michael; Musen Mark; Kikinis Ron
A prototype symbolic model of canonical functional neuroanatomy of the motor system.
Journal of biomedical informatics 2008;41(2):251-63.
2008: Lee Wei-Nchih; Shah Nigam; Sundlass Karanjot; Musen Mark
Comparison of ontology-based semantic-similarity measures.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():384-8.
2008: Musen M A; Shah N H; Noy N F; Dai B Y; Dorf M; Griffith N; Buntrok J; Jonquet C; Montegut M J; Rubin D L;
BioPortal: ontologies and data resources with the click of a mouse.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():1223-4.
2008: Buckeridge David L; Okhmatovskaia Anna; Tu Samson; O'Connor Martin; Nyulas Csongor; Musen Mark A
Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():76-80.
2008: Noy Natalya F; Tudorache Tania; de Coronado Sherri; Musen Mark A
Developing biomedical ontologies collaboratively.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():520-4.
2008: Shah Nigam H; Muse Mark A;
UMLS-Query: a perl module for querying the UMLS.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():652-6.
2008: Dinov Ivo D; Rubin Daniel; Lorensen William; Dugan Jonathan; Ma Jeff; Murphy Shawn; Kirschner Beth; Bug William; Sherman Michael; Floratos Aris; Kennedy David; Jagadish H V; Schmidt Jeanette; Athey Brian; Califano Andrea; Musen Mark; Altman Russ; Kikinis Ron; Kohane Isaac; Delp Scott; Parker D Stott; Toga Arthur W
iTools: a framework for classification, categorization and integration of computational biology resources.
PloS one 2008;3(5):e2265.
2008: Mons Barend; Ashburner Michael; Chichester Christine; van Mulligen Erik; Weeber Marc; den Dunnen Johan; van Ommen Gert-Jan; Musen Mark; Cockerill Matthew; Hermjakob Henning; Mons Albert; Packer Abel; Pacheco Roberto; Lewis Suzanna; Berkeley Alfred; Melton William; Barris Nickolas; Wales Jimmy; Meijssen Gerard; Moeller Erik; Roes Peter Jan; Borner Katy; Bairoch Amos
Calling on a million minds for community annotation in WikiProteins.
Genome biology 2008;9(5):R89.
2007: Rubin Daniel L; Noy Natalya F; Musen Mark A
Protégé: a tool for managing and using terminology in radiology applications.
Journal of digital imaging : the official journal of the Society for Computer Applications in Radiology 2007;20 Suppl 1():34-46.
2007: Tu Samson W; Campbell James R; Glasgow Julie; Nyman Mark A; McClure Robert; McClay James; Parker Craig; Hrabak Karen M; Berg David; Weida Tony; Mansfield James G; Musen Mark A; Abarbanel Robert M
The SAGE Guideline Model: achievements and overview.
Journal of the American Medical Informatics Association : JAMIA 2007;14(5):589-98.
2007: Moreira Dilvan A; Musen Mark A
OBO to OWL: a protege OWL tab to read/save OBO ontologies.
Bioinformatics (Oxford, England) 2007;23(14):1868-70.
2007: Dameron Olivier; Musen Mark A; Gibaud Bernard
Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy.
Artificial intelligence in medicine 2007;39(3):217-25.
2007: Supekar Kaustubh; Rubin Daniel; Noy Natasha; Musen Mark
Knowledge Zone: a public repository of peer-reviewed biomedical ontologies.
Studies in health technology and informatics 2007;129(Pt 1):812-6.
2007: Shah Nigam H; Rubin Daniel L; Espinosa Inigo; Montgomery Kelli; Musen Mark A
Annotation and query of tissue microarray data using the NCI Thesaurus.
BMC bioinformatics 2007;8():296.
2007: Musen Mark A
Technology for building intelligent systems: from psychology to engineering.
Nebraska Symposium on Motivation. Nebraska Symposium on Motivation 2007;52():145-84.
2006: Buckeridge David L; Owens Douglas K; Switzer Paul; Frank John; Musen Mark A
Evaluating detection of an inhalational anthrax outbreak.
Emerging infectious diseases 2006;12(12):1942-9.
2006: Rubin Daniel L; Dameron Olivier; Bashir Yasser; Grossman David; Dev Parvati; Musen Mark A
Using ontologies linked with geometric models to reason about penetrating injuries.
Artificial intelligence in medicine 2006;37(3):167-76.
2006: Musen Mark A; Lewis Suzanna; Smith Barry
Wrestling with SUMO and bio-ontologies.
Nature biotechnology 2006;24(1):21; author reply 23.
2006: Tu Samson W; Hrabak Karen M; Campbell James R; Glasgow Julie; Nyman Mark A; McClure Robert; McClay James; Abarbanel Robert; Mansfield James G; Martins Susana M; Goldstein Mary K; Musen Mark A
Use of declarative statements in creating and maintaining computer-interpretable knowledge bases for guideline-based care.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():784-8.
2006: Shah Nigam H; Rubin Daniel L; Supekar Kaustubh S; Musen Mark A
Ontology-based annotation and query of tissue microarray data.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():709-13.
2006: Rubin Daniel L; Grossman David; Neal Maxwell; Cook Daniel L; Bassingthwaighte James B; Musen Mark A
Ontology-based representation of simulation models of physiology.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():664-8.
2006: Lin N D; Martins S B; Chan A S; Coleman R W; Bosworth H B; Oddone E Z; Shankar R D; Musen M A; Hoffman B B; Goldstein M K
Identifying barriers to hypertension guideline adherence using clinician feedback at the point of care.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():494-8.
2006: Rubin Daniel L; Lewis Suzanna E; Mungall Chris J; Misra Sima; Westerfield Monte; Ashburner Michael; Sim Ida; Chute Christopher G; Solbrig Harold; Storey Margaret-Anne; Smith Barry; Day-Richter John; Noy Natalya F; Musen Mark A
National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge.
Omics : a journal of integrative biology 2006;10(2):185-98.
2005: Buckeridge David L; Switzer P; Owens D; Siegrist D; Pavlin J; Musen M
An evaluation model for syndromic surveillance: assessing the performance of a temporal algorithm.
MMWR. Morbidity and mortality weekly report 2005;54 Suppl():109-15.
2005: Supekar Kaustubh; Musen Mark
Ontology metadata to support the building of a library of biomedical ontologies.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():1126.
2005: Rubin Daniel L; Dameron Olivier; Musen Mark A
Use of description logic classification to reason about consequences of penetrating injuries.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():649-53.
2005: Eriksson Henrik; Tu Samson W; Musen Mark
Semantic clinical guideline documents.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():236-40.
2005: Dameron Olivier; Rubin Daniel L; Musen Mark A
Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():181-5.
2005: Rubin Daniel L; Bashir Yasser; Grossman David; Dev Parvati; Musen Mark A
Using an ontology of human anatomy to inform reasoning with geometric models.
Studies in health technology and informatics 2005;111():429-35.
2004: Goldstein Mary K; Coleman Robert W; Tu Samson W; Shankar Ravi D; O'Connor Martin J; Musen Mark A; Martins Susana B; Lavori Philip W; Shlipak Michael G; Oddone Eugene; Advani Aneel A; Gholami Parisa; Hoffman Brian B
Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers.
Journal of the American Medical Informatics Association : JAMIA 2004;11(5):368-76.
2004: Rubin Daniel L; Bashir Yasser; Grossman David; Dev Parvati; Musen Mark A
Linking ontologies with three-dimensional models of anatomy to predict the effects of penetrating injuries.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2004;5():3128-31.
2004: Tu Samson W; Campbell James; Musen Mark A
The SAGE guideline modeling: motivation and methodology.
Studies in health technology and informatics 2004;101():167-71.
2004: Advani Aneel; Jones Neil; Shahar Yuval; Goldstein Mary K; Musen Mark A
An intelligent case-adjustment algorithm for the automated design of population-based quality auditing protocols.
Studies in health technology and informatics 2004;107(Pt 2):1003-7.
2004: Tu Samson W; Musen Mark A; Shankar Ravi; Campbell James; Hrabak Karen; McClay James; Huff Stanley M; McClure Robert; Parker Craig; Rocha Roberto; Abarbanel Robert; Beard Nick; Glasgow Julie; Mansfield Guy; Ram Prabhu; Ye Qin; Mays Eric; Weida Tony; Chute Christopher G; McDonald Kevin; Molu David; Nyman Mark A; Scheitel Sidna; Solbrig Harold; Zill David A; Goldstein Mary K
Modeling guidelines for integration into clinical workflow.
Studies in health technology and informatics 2004;107(Pt 1):174-8.
2004: Chan A S; Coleman R W; Martins S B; Advani A; Musen M A; Bosworth H B; Oddone E Z; Shlipak M G; Hoffman B B; Goldstein M K
Evaluating provider adherence in a trial of a guideline-based decision support system for hypertension.
Studies in health technology and informatics 2004;107(Pt 1):125-9.
2003: O'Connor Martin J; Buckeridge David L; Choy Michael; Crubezy Monica; Pincus Zachary; Musen Mark A
BioSTORM: a system for automated surveillance of diverse data sources.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():1071.
2003: Shankar Ravi D; Tu Samson W; Musen Mark A
A knowledge-acquisition wizard to encode guidelines.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():1007.
2003: Noy Natalya F; Crubezy Monica; Fergerson Ray W; Knublauch Holger; Tu Samson W; Vendetti Jennifer; Musen Mark A
Protégé-2000: an open-source ontology-development and knowledge-acquisition environment.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():953.
2003: Tu Samson W; Campbell James; Musen Mark A
The structure of guideline recommendations: a synthesis.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():679-83.
2003: Pincus Zachary; Musen Mark A
Contextualizing heterogeneous data for integration and inference.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():514-8.
2003: Buckeridge David L; Musen Mark A; Switzer Paul; Crubézy Monica
An analytic framework fo space-time aberrancy detection in public health surveillance data.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():120-4.
2003: Advani Aneel; Goldstein Mary; Shahar Yuval; Musen Mark A
Developing quality indicators and auditing protocols from formal guideline models: knowledge representation and transformations.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():11-5.
2002: Bravata D M; McDonald K; Owens D K; Buckeridge D; Haberland C; Rydzak C; Schleinitz M; Smith W M; Szeto H; Wilkening D; Musen M; Duncan B W; Nouri B; Dangiolo M B; Liu H; Shofer S; Graham J; Davies S
Bioterrorism preparedness and response: use of information technologies and decision support systems.
Evidence report/technology assessment (Summary) 2002;(59):1-8.
2002: Meric Funda; Bernstam Elmer V; Mirza Nadeem Q; Hunt Kelly K; Ames Frederick C; Ross Merrick I; Kuerer Henry M; Pollock Raphael E; Musen Mark A; Singletary S Eva
Breast cancer on the world wide web: cross sectional survey of quality of information and popularity of websites.
BMJ (Clinical research ed.) 2002;324(7337):577-81.
2002: O'Connor Martin J; Tu Samson W; Musen Mark A
The Chronus II temporal database mediator.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():567-71.
2002: Das Amar K; Musen Mark A
SYNCHRONUS: a reusable software module for temporal integration.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():195-9.
2002: Buckeridge David L; Graham Justin; O'Connor Martin J; Choy Michael K; Tu Samson W; Musen Mark A
Knowledge-based bioterrorism surveillance.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():76-80.
2002: Advani Aneel; Goldstein Mary; Musen Mark A
A framework for evidence-adaptive quality assessment that unifies guideline-based and performance-indicator approaches.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():2-6.
2002: Musen M A
Medical informatics: searching for underlying components.
Methods of information in medicine 2002;41(1):12-9.
2001: Shankar R D; Tu S W; Martins S B; Fagan L M; Goldstein M K; Musen M A
Integration of textual guideline documents with formal guideline knowledge bases.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():617-21.
2001: Johnson P D; Tu S W; Musen M A; Purves I
A virtual medical record for guideline-based decision support.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():294-8.
2001: Goldstein M K; Hoffman B B; Coleman R W; Tu S W; Shankar R D; O'Connor M; Martins S; Martins S; Advani A; Musen M A
Patient safety in guideline-based decision support for hypertension management: ATHENA DSS.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():214-8.
2001: Das A K; Musen M A
A formal method to resolve temporal mismatches in clinical databases.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():130-4.
2001: Advani A; Shahar Y; Musen M A
Medical quality assessment by scoring adherence to guideline intentions.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():2-6.
2001: Shankar R D; Martins S B; Tu S W; Goldstein M K; Musen M A
Building an explanation function for a hypertension decision-support system.
Studies in health technology and informatics 2001;84(Pt 1):538-42.
2001: O'Connor M J; Grosso W E; Tu S W; Musen M A
RASTA: a distributed temporal abstraction system to facilitate knowledge-driven monitoring of clinical databases.
Studies in health technology and informatics 2001;84(Pt 1):508-12.
2001: Tu S W; Musen M A
Modeling data and knowledge in the EON guideline architecture.
Studies in health technology and informatics 2001;84(Pt 1):280-4.
2000: Stead W W; Miller R A; Musen M A; Hersh W R
Integration and beyond: panel discussion.
Journal of the American Medical Informatics Association : JAMIA 2000;7(2):146-8.
2000: Stead W W; Miller R A; Musen M A; Hersh W R
Integration and beyond: linking information from disparate sources and into workflow.
Journal of the American Medical Informatics Association : JAMIA 2000;7(2):135-45.
2000: Tu S W; Musen M A
From guideline modeling to guideline execution: defining guideline-based decision-support services.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():863-7.
2000: Shon J; Marshall J; Musen M A
The impact of displayed awards on the credibility and retention of Web site information.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():794-8.
2000: Rubin D L; Gennari J; Musen M A
Knowledge representation and tool support for critiquing clinical trial protocols.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():724-8.
2000: O'Connor M J; Tu S W; Musen M A
Representation of temporal indeterminacy in clinical databases.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():615-9.
2000: Li Q; Shilane P; Noy N F; Musen M A
Ontology acquisition from on-line knowledge sources.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():497-501.
2000: Goldstein M K; Hoffman B B; Coleman R W; Musen M A; Tu S W; Advani A; Shankar R; O'Connor M
Implementing clinical practice guidelines while taking account of changing evidence: ATHENA DSS, an easily modifiable decision-support system for managing hypertension in primary care.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():300-4.
2000: Musen M A
Design and use of clinical ontologies: curricular goals for the education of health-telematics professionals.
Studies in health technology and informatics 2000;72():40-7.
1999: van der Lei J; Moorman P W; Musen M A
Electronic patient records in medical practice: a multidisciplinary endeavor.
Methods of information in medicine 1999;38(4-5):287-8.
1999: Musen M A
Scalable software architectures for decision support.
Methods of information in medicine 1999;38(4-5):229-38.
1999: Shahar Y; Chen H; Stites D P; Basso L V; Kaizer H; Wilson D M; Musen M A
Semi-automated entry of clinical temporal-abstraction knowledge.
Journal of the American Medical Informatics Association : JAMIA 1999;6(6):494-511.
1999: Musen M A
Stanford Medical Informatics: uncommon research, common goals.
M.D. computing : computers in medical practice 1999;16(1):47-8, 50.
1999: Oliver D E; Shahar Y; Shortliffe E H; Musen M A
Representation of change in controlled medical terminologies.
Artificial intelligence in medicine 1999;15(1):53-76.
1999: Shon J; Musen M A
The low availability of metadata elements for evaluating the quality of medical information on the World Wide Web.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():945-9.
1999: Advani A; Tu S; O'Connor M; Coleman R; Goldstein M K; Musen M
Integrating a modern knowledge-based system architecture with a legacy VA database: the ATHENA and EON projects at Stanford.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():653-7.
1999: Tu S W; Musen M A
A flexible approach to guideline modeling.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():420-4.
1999: Shankar R D; Musen M A
Justification of automated decision-making: medical explanations as medical arguments.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():395-9.
1999: Rubin D L; Gennari J H; Srinivas S; Yuen A; Kaizer H; Musen M A; Silva J S
Tool support for authoring eligibility criteria for cancer trials.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():369-73.
1999: O'Connor M J; Tu S W; Musen M A
Applying temporal joins to clinical databases.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():335-9.
1998: Musen M A
Domain ontologies in software engineering: use of Protégé with the EON architecture.
Methods of information in medicine 1998;37(4-5):540-50.
1998: Frisse M E; Musen M A; Slack W V; Stead W W
How should we organize to do informatics? Report of the ACMI Debate at the 1997 AMIA Fall Symposium.
Journal of the American Medical Informatics Association : JAMIA 1998;5(3):293-304.
1998: Park J Y; Musen M A
VM-in-Protégé: a study of software reuse.
Studies in health technology and informatics 1998;52 Pt 1():644-8.
1998: Smith D S; Park J Y; Musen M A
Therapy planning as constraint satisfaction: a computer-based antiretroviral therapy advisor for the management of HIV.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():627-31.
1998: Shankar R D; Tu S W; Musen M A
A declarative explanation framework that uses a collection of visualization agents.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():602-6.
1998: Musen M A
Modern architectures for intelligent systems: reusable ontologies and problem-solving methods.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():46-52.
1997: Ohno-Machado L; Musen M A
Sequential versus standard neural networks for pattern recognition: an example using the domain of coronary heart disease.
Computers in biology and medicine 1997;27(4):267-81.
1997: Nguyen J H; Shahar Y; Tu S W; Das A K; Musen M A
A temporal database mediator for protocol-based decision support.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1997;():298-302.
1997: Das A K; Musen M A
A foundational model of time for heterogeneous clinical databases.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1997;():106-10.
1996: Musen M A; Tu S W; Das A K; Shahar Y
EON: a component-based approach to automation of protocol-directed therapy.
Journal of the American Medical Informatics Association : JAMIA 1996;3(6):367-88.
1996: Shahar Y; Musen M A
Knowledge-based temporal abstraction in clinical domains.
Artificial intelligence in medicine 1996;8(3):267-98.
1996: Musen M A; Barnett E A
The road to professionalism in medical informatics: the role of training.
Methods of information in medicine 1996;35(2):148-51; discussion 152-4.
1996: Fridsma D B; Gennari J H; Musen M A
Making generic guidelines site-specific.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():597-601.
1996: Tu S W; Musen M A
The EON model of intervention protocols and guidelines.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():587-91.
1996: Stein A; Musen M A; Shahar Y
Knowledge acquisition for temporal abstraction.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():204-8.
1996: Tuttle M S; Sherertz D D; Olson N E; Nelson S J; Erlbaum M S; Keck K D; Davis A N; Suarez-Munist O N; Lipow S S; Cole W G; Fagan L M; Acuff R D; Crangle C E; Musen M A; Tu S W; Wiederhold G C; Carlson R W
Toward reusable software components at the point of care.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():150-4.
1995: Tu S W; Eriksson H; Gennari J H; Shahar Y; Musen M A
Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision support.
Artificial intelligence in medicine 1995;7(3):257-89.
1995: Musen M A; Schreiber A T
Architectures for intelligent systems based on reusable components.
Artificial intelligence in medicine 1995;7(3):189-99.
1995: Musen M A; Wieckert K E; Miller E T; Campbell K E; Fagan L M
Development of a controlled medical terminology: knowledge acquisition and knowledge representation.
Methods of information in medicine 1995;34(1-2):85-95.
1995: van der Lei J; Musen M A
The separation of reviewing knowledge from medical knowledge.
Methods of information in medicine 1995;34(1-2):131-9.
1995: Carlson R W; Tu S W; Lane N M; Lai T L; Kemper C A; Musen M A; Shortliffe E H
Computer-based screening of patients with HIV/AIDS for clinical-trial eligibility.
The Online journal of current clinical trials 1995;Doc No 179():[3347 words; 32 paragraphs].
1995: Kuilboer M M; Wilson D M; Musen M A; Wit J M
CALIPER: individualized-growth curves for the monitoring of children's growth.
Medinfo. MEDINFO 1995;8 Pt 2():1686.
1995: Shahar Y; Das A K; Tu S W; Kraemer F B; Basso L V; Musen M A
Knowledge-based temporal abstraction in diabetes therapy.
Medinfo. MEDINFO 1995;8 Pt 1():852-6.
1995: Ohno-Machado L; Walker M G; Musen M A
Hierarchical neural networks for survival analysis.
Medinfo. MEDINFO 1995;8 Pt 1():828-32.
1995: Musen M A; Gennari J H; Eriksson H; Tu S W; Puerta A R
PROTEGE-II: computer support for development of intelligent systems from libraries of components.
Medinfo. MEDINFO 1995;8 Pt 1():766-70.
1995: Miller E T; Wieckert K E; Fagan L M; Musen M A
The development of a controlled medical terminology: identification, collaboration, and customization.
Medinfo. MEDINFO 1995;8 Pt 1():148-52.
1995: Ohno-Machado L; Musen M A
A comparison of two computer-based prognostic systems for AIDS.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():737-41.
1995: Das A K; Musen M A
A comparison of the temporal expressiveness of three database query methods.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():331-7.
1995: Musen M A; Gennari J H; Wong W W
A rational reconstruction of INTERNIST-I using PROTEGE-II.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():289-93.
1995: Gennari J H; Oliver D E; Pratt W; Rice J; Musen M A
A web-based architecture for a medical vocabulary server.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():275-9.
1995: Rosenal T W; Forsythe D E; Musen M A; Seiver A
Support for information management in critical care: a new approach to identify needs.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():2-6.
1994: Das A K; Musen M A
A temporal query system for protocol-directed decision support.
Methods of information in medicine 1994;33(4):358-70.
1994: Campbell K E; Das A K; Musen M A
A logical foundation for representation of clinical data.
Journal of the American Medical Informatics Association : JAMIA 1994;1(3):218-32.
1994: Henry S B; Borchelt D; Schreiner J G; Musen M A
A computer-based approach to quality improvement for telephone triage in a community AIDS clinic.
Nursing administration quarterly 1994;18(2):65-73.
1994: Shahar Y; Das A K; Tu S W; Kraemer F B; Musen M A
Knowledge-based temporal abstraction for diabetic monitoring.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():697-701.
1994: Das A K; Shahar Y; Tu S W; Musen M A
A temporal-abstraction mediator for protocol-based decision-support systems.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():320-4.
1994: Musen M A; Eriksson H; Gennari J H; Tu S W; Puerta A R
PROTEGE-II: a suite of tools for development of intelligent systems from reusable components.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():1065.
1994: Barnett O; Shortliffe E; Chueh H; Piggins J; Greenes R; Cimino J; Musen M; Clayton P; Humphreys B; Kingsland L
Patient care applications on Internet.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():1060.
1993: Tu S W; Kemper C A; Lane N M; Carlson R W; Musen M A
A methodology for determining patients' eligibility for clinical trials.
Methods of information in medicine 1993;32(4):317-25.
1993: Shahar Y; Musen M A
RESUME: a temporal-abstraction system for patient monitoring.
Computers and biomedical research, an international journal 1993;26(3):255-73.
1993: van der Lei J; van der Does E; Man in 't Veld A J; Musen M A; van Bemmel J H
Response of general practitioners to computer-generated critiques of hypertension therapy.
Methods of information in medicine 1993;32(2):146-53.
1993: Kuilboer M M; Shahar Y; Wilson D M; Musen M A
Knowledge reuse: temporal-abstraction mechanisms for the assessment of children's growth.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():449-53.
1993: Ohno-Machado L; Parra E; Henry S B; Tu S W; Musen M A
AIDS2: a decision-support tool for decreasing physicians' uncertainty regarding patient eligibility for HIV treatment protocols.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():429-33.
1993: Egar J W; Musen M A
Automated modeling of medical decisions.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():424-8.
1993: Campbell K E; Wieckert K; Fagan L M; Musen M A
A computer-based tool for generation of progress notes.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():284-8.
1992: Musen M A
Dimensions of knowledge sharing and reuse.
Computers and biomedical research, an international journal 1992;25(5):435-67.
1992: Musen M A; Carlson R W; Fagan L M; Deresinski S C; Shortliffe E H
T-HELPER: automated support for community-based clinical research.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():719-23.
1992: Henry S B; Schreiner J G; Borchelt D; Musen M A
A needs analysis for computer-based telephone triage in a community AIDS clinic.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():59-63.
1992: Campbell K E; Musen M A
Representation of clinical data using SNOMED III and conceptual graphs.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():354-8.
1992: Egar J W; Musen M A
Graph-grammar productions for the modeling of medical dilemmas.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():349-53.
1992: Das A K; Tu S W; Purcell G P; Musen M A
An extended SQL for temporal data management in clinical decision-support systems.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():128-32.
1992: Shahar Y; Musen M A
A temporal-abstraction system for patient monitoring.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():121-7.
1991: van der Lei J; Musen M A; van der Does E; Man in 't Veld A J; van Bemmel J H
Comparison of computer-aided and human review of general practitioners' management of hypertension.
Lancet 1991;338(8781):1504-8.
1991: van der Lei J; Musen M A
A model for critiquing based on automated medical records.
Computers and biomedical research, an international journal 1991;24(4):344-78.
1991: Shahar Y; Tu S W; Musen M A
Temporal-abstraction mechanisms in management of clinical protocols.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1991;():629-33.
1989: Musen M A
The strained quality of medical data.
Methods of information in medicine 1989;28(3):123-5.
1989: Musen M A; van der Lei J
Knowledge engineering for clinical consultation programs: modeling the application area.
Methods of information in medicine 1989;28(1):28-35.
1987: Walton J D; Musen M A; Combs D M; Lane C D; Shortliffe E H; Fagan L M
Graphical access to medical expert systems: III. Design of a knowledge acquisition environment.
Methods of information in medicine 1987;26(3):78-88.
1987: Musen M A; Rohn J A; Fagan L M; Shortliffe E H
Knowledge engineering for a clinical trial advice system: uncovering errors in protocol specification.
Bulletin du cancer 1987;74(3):291-6.

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