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Arcady Mushegian

Research Profile

Concepts & Ideas

Genes & Molecular Sequences

Phenomena

Evolution, Molecular

Procedures

Sequence Alignment

Occupations

Physiology

Chemicals & Drugs

Viral Proteins

Living Beings

Bacteriophages

Co-author Network

Publications

TOP 3
Xiaofei Gao; Leigh Ann Feuerbacher; Minzhao Huang; Marie-Luise Lubos; Arcady Mushegian; Rachel Olsen; Thanh H Pham; Chad Slawson; Xiaogang Wang; Philip R Hardwidge
NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-κB activation.
Francesco Smedile; Olga Tsoy; Mireno Borghini; Laura Giuliano; Peter N Golyshin; Violetta La Cono; Enzo Messina; Luis S Monticelli; Arcady Mushegian; Michail M Yakimov
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.
Karen T Smith; Michael P Washburn; Rhonda Egidy; Laurence Florens; Skylar A Martin-Brown; Arcady Mushegian; Mihaela E Sardiu; Chris Seidel; Jerry L Workman
Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex.

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All Publications

2013: Xiaofei Gao; Leigh Ann Feuerbacher; Minzhao Huang; Marie-Luise Lubos; Arcady Mushegian; Rachel Olsen; Thanh H Pham; Chad Slawson; Xiaogang Wang; Philip R Hardwidge
NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-κB activation.
Cell host & microbe 2013;13(1):87-99.
2013: Francesco Smedile; Olga Tsoy; Mireno Borghini; Laura Giuliano; Peter N Golyshin; Violetta La Cono; Enzo Messina; Luis S Monticelli; Arcady Mushegian; Michail M Yakimov
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.
Environmental microbiology 2013;15(1):167-82.
2012: Karen T Smith; Michael P Washburn; Rhonda Egidy; Laurence Florens; Skylar A Martin-Brown; Arcady Mushegian; Mihaela E Sardiu; Chris Seidel; Jerry L Workman
Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex.
Molecular & cellular proteomics : MCP 2012;11(12):1815-28.
2012: Tamaki Suganuma; Selene K Swanson; Michael P Washburn; Laurence Florens; Arcady Mushegian; Jerry L Workman
A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component.
Molecular & cellular proteomics : MCP 2012;11(5):90-9.
2012: Arcady Mushegian; Vsevolod V Gurevich; Eugenia V Gurevich
The origin and evolution of G protein-coupled receptor kinases.
PloS one 2012;7(3):e33806.
2011: Arcady Mushegian; Joan W Conaway
Thematic minireview series on computational systems biology.
The Journal of biological chemistry 2011;286(27):23621-2.
2011: Aurélie J Krol; Arcady Mushegian; Andrew C Oates; Mary-Lee Dequéant; Earl Glynn; Gaye Hattem; Daniela Roellig; Olivier Tassy; Olivier Pourquié
Evolutionary plasticity of segmentation clock networks.
Development (Cambridge, England) 2011;138(13):2783-92.
2011: Mensur Dlakic; Arcady Mushegian
Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase.
RNA (New York, N.Y.) 2011;17(5):799-808.
2011: Lavanya Kannan; Hua Li; Arcady Mushegian
A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance.
Journal of computational biology : a journal of computational molecular cell biology 2011;18(5):743-57.
2011: David M Kristensen; Xixu Cai; Arcady Mushegian
Evolutionarily conserved orthologous families in phages are relatively rare in their prokaryotic hosts.
Journal of bacteriology 2011;193(8):1806-14.
2011: Arcady Mushegian
Grand challenges in bioinformatics and computational biology.
Frontiers in genetics 2011;2():60.
2010: Andrea M Murphy; Megan Moerdyk-Schauwecker; Arcady Mushegian; Valery Z Grdzelishvili
Sequence-function analysis of the Sendai virus L protein domain VI.
Virology 2010;405(2):370-82.
2010: Tamaki Suganuma; Arcady Mushegian; Selene K Swanson; Susan M Abmayr; Laurence Florens; Michael Washburn; Jerry L Workman
The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes.
Cell 2010;142(5):726-36.
2010: David M Kristensen; Lavanya Kannan; Michael K Coleman; Yuri I Wolf; Alexander Sorokin; Eugene V Koonin; Arcady Mushegian
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
Bioinformatics (Oxford, England) 2010;26(12):1481-7.
2010: Galina V Glazko; Arcady Mushegian
Measuring gene expression divergence: the distance to keep.
Biology direct 2010;5():51.
2009: Vikki M Weake; Selene K Swanson; Arcady Mushegian; Laurence Florens; Michael Washburn; Susan M Abmayr; Jerry L Workman
A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.
Genes & development 2009;23(24):2818-23.
2009: Olga Tsoy; Dmitry A Ravcheev; Arcady Mushegian
Comparative genomics of ethanolamine utilization.
Journal of bacteriology 2009;191(23):7157-64.
2009: Mika Asai-Coakwell; Curtis R French; Ming Ye; Kamal Garcha; Karin Bigot; Anoja G Perera; Karen Staehling-Hampton; Silvina C Mema; Bhaskar Chanda; Arcady Mushegian; Steven Bamforth; Michael R Doschak; Guang Li; Matthew B Dobbs; Philip F Giampietro; Brian P Brooks; Perumalsamy Vijayalakshmi; Yves Sauvé; Marc Abitbol; Periasamy Sundaresan; Veronica van Heyningen; Olivier Pourquié; Tully Underhill; Andrew J Waskiewicz; Ordan J Lehmann
Incomplete penetrance and phenotypic variability characterize Gdf6-attributable oculo-skeletal phenotypes.
Human molecular genetics 2009;18(6):1110-21.
2009: Hua Li; David M Kristensen; Michael K Coleman; Arcady Mushegian
Detection of biochemical pathways by probabilistic matching of phyletic vectors.
PloS one 2009;4(4):e5326.
2008: Leonid Minakhin; Manisha Goel; Zhanna Berdygulova; Erlan Ramanculov; Laurence Florens; Galina Glazko; Valeri N Karamychev; Alexei I Slesarev; Sergei A Kozyavkin; Igor Khromov; Hans-W Ackermann; Michael Washburn; Arcady Mushegian; Konstantin Severinov
Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails.
Journal of molecular biology 2008;378(2):468-80.
2008: Dhruti Savalia; Lars F Westblade; Manisha Goel; Laurence Florens; Priscilla Kemp; Natalja Akulenko; Olga Pavlova; Julio C Padovan; Brian T Chait; Michael Washburn; Hans-W Ackermann; Arcady Mushegian; Tarasii Gabisonia; Ian Molineux; Konstantin Severinov
Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage.
Journal of molecular biology 2008;377(3):774-89.
2008: Michelle M Roux; Monte J Radeke; Manisha Goel; Arcady Mushegian; Kathy R Foltz
2DE identification of proteins exhibiting turnover and phosphorylation dynamics during sea urchin egg activation.
Developmental biology 2008;313(2):630-47.
2008: Diana Baumann; Malcolm Cook; Limei Ma; Arcady Mushegian; Erik Sanders; Joel Schwartz; C Ron Yu
A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae.
Biology direct 2008;3():28.
2008: Arcady Mushegian
Gene content of LUCA, the last universal common ancestor.
Frontiers in bioscience : a journal and virtual library 2008;13():4657-66.
2007: Lisa L Sandell; Brian W Sanderson; Gennadiy Moiseyev; Teri Johnson; Arcady Mushegian; Kendra Young; Jean-Philippe Rey; Jian-Xing Ma; Karen Staehling-Hampton; Paul A Trainor
RDH10 is essential for synthesis of embryonic retinoic acid and is required for limb, craniofacial, and organ development.
Genes & development 2007;21(9):1113-24.
2007: Charles A S Banks; Stephanie E Kong; Henrik Spahr; Laurence Florens; Skylar A Martin-Brown; Michael Washburn; Joan Weliky Conaway; Arcady Mushegian; Ronald C Conaway
Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL.
The Journal of biological chemistry 2007;282(8):5761-9.
2007: Galina V Glazko; Vladimir Makarenkov; Jing Liu; Arcady Mushegian
Evolutionary history of bacteriophages with double-stranded DNA genomes.
Biology direct 2007;2():36.
2007: Frank Emmert-Streib; Arcady Mushegian
A topological algorithm for identification of structural domains of proteins.
BMC bioinformatics 2007;8():237.
2006: Mary-Lee Dequéant; Earl Glynn; Karin Gaudenz; Matthias Wahl; Jie Chen; Arcady Mushegian; Olivier Pourquié
A complex oscillating network of signaling genes underlies the mouse segmentation clock.
Science (New York, N.Y.) 2006;314(5805):1595-8.
2006: Tatyana Naryshkina; Jing Liu; Laurence Florens; Selene K Swanson; Andrey R Pavlov; Nadejda Pavlova; Ross Inman; Leonid Minakhin; Sergei A Kozyavkin; Michael Washburn; Arcady Mushegian; Konstantin Severinov
Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions.
Journal of molecular biology 2006;364(4):667-77.
2006: Cynthia Bradham; Kathy R Foltz; Wendy S Beane; Maria I Arnone; Francesca Rizzo; James A Coffman; Arcady Mushegian; Manisha Goel; Julia Morales; Anne-Marie Geneviere; François Lapraz; Anthony J Robertson; Hemant Kelkar; Mariano Loza-Coll; Ian K Townley; Michael Raisch; Michelle M Roux; Thierry Lepage; Christian Gache; David R McClay; Gerard Manning
The sea urchin kinome: a first look.
Developmental biology 2006;300(1):180-93.
2006: Manisha Goel; Arcady Mushegian
Intermediary metabolism in sea urchin: the first inferences from the genome sequence.
Developmental biology 2006;300(1):282-92.
2006: Sue L Jaspersen; Adriana E Martin; Galina V Glazko; Thomas H Giddings; Garry Morgan; Arcady Mushegian; Mark Winey
The Sad1-UNC-84 homology domain in Mps3 interacts with Mps2 to connect the spindle pole body with the nuclear envelope.
The Journal of cell biology 2006;174(5):665-75.
2006: Reena Rai; Arcady Mushegian; Kira Makarova; Anna Kashina
Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases.
EMBO reports 2006;7(8):800-5.
2006: Jing Liu; Galina V Glazko; Arcady Mushegian
Protein repertoire of double-stranded DNA bacteriophages.
Virus research 2006;117(1):68-80.
2006: Earl F Glynn; Jie Chen; Arcady Mushegian
Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms.
Bioinformatics (Oxford, England) 2006;22(3):310-6.
2006: Galina V Glazko; Michael Coleman; Arcady Mushegian
Similarity searches in genome-wide numerical data sets.
Biology direct 2006;1():13.
2005: Jingji Jin; Yong Cai; Tingting Yao; Aaron J Gottschalk; Laurence Florens; Selene K Swanson; José L Gutiérrez; Michael K Coleman; Jerry L Workman; Arcady Mushegian; Michael Washburn; Ronald C Conaway; Joan Weliky Conaway
A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex.
The Journal of biological chemistry 2005;280(50):41207-12.
2005: Leonid Minakhin; Ekaterina Semenova; Jing Liu; Anatoly Vasilov; Elena Severinova; Tarasii Gabisonia; Ross Inman; Arcady Mushegian; Konstantin Severinov
Genome sequence and gene expression of Bacillus anthracis bacteriophage Fah.
Journal of molecular biology 2005;354(1):1-15.
2005: Galina V Glazko; Alexander Gordon; Arcady Mushegian
The choice of optimal distance measure in genome-wide datasets.
Bioinformatics (Oxford, England) 2005;21 Suppl 3():iii3-11.
2005: Arcady Mushegian
Protein content of minimal and ancestral ribosome.
RNA (New York, N.Y.) 2005;11(9):1400-6.
2005: Piotr Z Kozbial; Arcady Mushegian
Natural history of S-adenosylmethionine-binding proteins.
BMC structural biology 2005;5():19.
2004: Qin Yan; Takumi Kamura; Yong Cai; Jingji Jin; Mircea Ivan; Arcady Mushegian; Ronald C Conaway; Joan Weliky Conaway
Identification of Elongin C and Skp1 sequences that determine Cullin selection.
The Journal of biological chemistry 2004;279(41):43019-26.
2004: Jing Liu; Arcady Mushegian
Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages.
Journal of bacteriology 2004;186(13):4369-75.
2004: Michael Gensheimer; Arcady Mushegian
Chalcone isomerase family and fold: no longer unique to plants.
Protein science : a publication of the Protein Society 2004;13(2):540-4.
2004: Galina V Glazko; Arcady Mushegian
Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.
Genome biology 2004;5(5):R32.
2004: O Michael Melko; Arcady Mushegian
Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes.
Bioinformatics (Oxford, England) 2004;20(1):67-74.
2003: Julia Yuzenkova; Sergei Nechaev; Jana Berlin; Dragana Rogulja; Konstantin Kuznedelov; Ross Inman; Arcady Mushegian; Konstantin Severinov
Genome of Xanthomonas oryzae bacteriophage Xp10: an odd T-odd phage.
Journal of molecular biology 2003;330(4):735-48.
2003: Jing Liu; Arcady Mushegian
Three monophyletic superfamilies account for the majority of the known glycosyltransferases.
Protein science : a publication of the Protein Society 2003;12(7):1418-31.
2003: Jessica Rennert; James A Coffman; Arcady Mushegian; Anthony J Robertson
The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms.
BMC evolutionary biology 2003;3():4.
2002: Teresa A Golden; Stephen E Schauer; Jean D Lang; Stéphane Pien; Arcady Mushegian; Ueli Grossniklaus; David W Meinke; Animesh Ray
SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis.
Plant physiology 2002;130(2):808-22.
2002: Arcady Mushegian
Refining structural and functional predictions for secretasome components by comparative sequence analysis.
Proteins 2002;47(1):69-74.
2001: Arcady Mushegian; R Medzhitov
Evolutionary perspective on innate immune recognition.
The Journal of cell biology 2001;155(5):705-10.
2000: Thien-Fah Mah; Konstantin Kuznedelov; Arcady Mushegian; Konstantin Severinov; Jack Greenblatt
The alpha subunit of E. coli RNA polymerase activates RNA binding by NusA.
Genes & development 2000;14(20):2664-75.