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Prakash Nadkarni
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Network (preview)
26
Miller, Perry
15
Marenco, Luis
11
Brandt, Cynthia
10
Shepherd, Gordon
6
Brandt, Cynthia
6
Skoufos, E
6
Cheung, Kei-Hoi
5
Shepherd, Gordon
5
Deshpande, Aniruddha
5
Miller, Perry
5
Healy, MD
4
Erdos, Joseph
4
Kidd, Kenneth
4
Crasto, Chiquito
4
Sun, Kexin
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All Publications
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2009: Marenco Luis; Wang Rixin; Nadkarni Prakash
Automated database mediation using ontological metadata mappings.
Journal of the American Medical Informatics Association : JAMIA 2009;16(5):723-37.
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2007: Dinu Valentin; Nadkarni Prakash
Guidelines for the effective use of entity-attribute-value modeling for biomedical databases.
International journal of medical informatics 2007;76(11-12):769-79.
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2007: Crasto Chiquito J; Marenco Luis N; Liu Nian; Morse Thomas M; Cheung Kei-Hoi; Lai Peter C; Bahl Gautam; Masiar Peter; Lam Hugo Y K; Lim Ernest; Chen Huajin; Nadkarni Prakash; Migliore Michele; Miller Perry L; Shepherd Gordon M
SenseLab: new developments in disseminating neuroscience information.
Briefings in bioinformatics 2007;8(3):150-62.
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2007: Nadkarni Prakash; Marenco Luis
Database architectures for neuroscience applications.
Methods in molecular biology (Clifton, N.J.) 2007;401():37-52.
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2007: Marenco Luis; Nadkarni Prakash; Martone Maryann; Gupta Amarnath
Interoperability across neuroscience databases.
Methods in molecular biology (Clifton, N.J.) 2007;401():23-36.
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2006: Dinu Valentin; Nadkarni Prakash; Brandt Cynthia
Pivoting approaches for bulk extraction of Entity-Attribute-Value data.
Computer methods and programs in biomedicine 2006;82(1):38-43.
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2006: Brandt Cynthia A; Argraves Stephanie; Money Roy; Ananth Gowri; Trocky Nina M; Nadkarni Prakash M
Informatics tools to improve clinical research study implementation.
Contemporary clinical trials 2006;27(2):112-22.
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2006: Nadkarni P M; Brandt C A
The Common Data Elements for cancer research: remarks on functions and structure.
Methods of information in medicine 2006;45(6):594-601.
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2005: Nadkarni Prakash M; Wiepert Mathieu
Translating pharmacogenomics discoveries into clinical practice: the role of curated databases.
Pharmacogenomics 2005;6(5):451-4.
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2005: Holford Matthew; Li Naixin; Nadkarni Prakash; Zhao Hongyu
VitaPad: visualization tools for the analysis of pathway data.
Bioinformatics (Oxford, England) 2005;21(8):1596-602.
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2005: Deshpande Aniruddha M; Shiffman Richard N; Nadkarni Prakash M
Metadata-driven Delphi rating on the Internet.
Computer methods and programs in biomedicine 2005;77(1):49-56.
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2005: Sun K; Nadkarni P M; Brandt C A
Metadata driven generation of reports for clinical studies.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():1124.
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2005: Brandt C A; Lu C C; Nadkarni P M
Automating identification of adverse events related to abnormal lab results using standard vocabularies.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():903.
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2005: Argraves S; Brandt C A; Money R; Nadkarni P
Informatics tools to improve clinical research.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():883.
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2004: Marenco Luis; Wang Tzuu-Yi; Shepherd Gordon; Miller Perry L; Nadkarni Prakash
QIS: A framework for biomedical database federation.
Journal of the American Medical Informatics Association : JAMIA 2004;11(6):523-34.
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2004: Brandt Cynthia A; Gadagkar Rohit; Rodriguez Cesar; Nadkarni Prakash M
Managing complex change in clinical study metadata.
Journal of the American Medical Informatics Association : JAMIA 2004;11(5):380-91.
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2004: Brandt C A; Sun K; Charpentier P; Nadkarni P M
Integration of Web-based and PC-based clinical research databases.
Methods of information in medicine 2004;43(3):287-95.
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2004: Brandt C A; Cohen D B; Shifman M A; Miller P L; Nadkarni P M; Frawley S J
Approaches and informatics tools to assist in the integration of similar clinical research questionnaires.
Methods of information in medicine 2004;43(2):156-62.
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2003: Marenco Luis; Tosches Nicholas; Crasto Chiquito; Shepherd Gordon; Miller Perry L; Nadkarni Prakash M
Achieving evolvable Web-database bioscience applications using the EAV/CR framework: recent advances.
Journal of the American Medical Informatics Association : JAMIA 2003;10(5):444-53.
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2003: Deshpande Aniruddha M; Brandt Cynthia; Nadkarni Prakash M
Temporal query of attribute-value patient data: utilizing the constraints of clinical studies.
International journal of medical informatics 2003;70(1):59-77.
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2003: Fisk John M; Mutalik Pradeep; Levin Forrest W; Erdos Joseph; Taylor Caroline; Nadkarni Prakash
Integrating query of relational and textual data in clinical databases: a case study.
Journal of the American Medical Informatics Association : JAMIA 2003;10(1):21-38.
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2003: Crasto Chiquito J; Marenco Luis N; Migliore Michele; Mao Buqing; Nadkarni Prakash M; Miller Perry; Shepherd Gordon M
Text mining neuroscience journal articles to populate neuroscience databases.
Neuroinformatics 2003;1(3):215-37.
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2003: Crasto Chiquito J; Morse Thomas M; Migliore Michele; Nadkarni Prakash; Hines Michael; Brash Douglas E; Miller Perry L; Shepherd Gordon M
Creating knowledgebases to text-mine PUBMED articles using clustering techniques.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():821.
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2003: Brandt C A; Deshpande A M; Lu C; Ananth G; Sun K; Gadagkar R; Morse R; Rodriguez C; Miller P L; Nadkarni P M;
TrialDB: A web-based Clinical Study Data Management System.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():794.
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2002: Brandt Cynthia A; Morse Richard; Matthews Keri; Sun Kexin; Deshpande Aniruddha M; Gadagkar Rohit; Cohen Dorothy B; Miller Perry L; Nadkarni Prakash M
Metadata-driven creation of data marts from an EAV-modeled clinical research database.
International journal of medical informatics 2002;65(3):225-41.
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2002: Nadkarni Prakash; Sun Kexin; Wiepert Mathieu
Designing and implementing special-purpose databases: lessons from the pharmacogenetic network.
Pharmacogenomics 2002;3(5):687-96.
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2002: Deshpande Aniruddha M; Brandt Cynthia; Nadkarni Prakash M
Metadata-driven ad hoc query of patient data: meeting the needs of clinical studies.
Journal of the American Medical Informatics Association : JAMIA 2002;9(4):369-82.
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2001: Mutalik P G; Deshpande A; Nadkarni P M
Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS.
Journal of the American Medical Informatics Association : JAMIA 2001;8(6):598-609.
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2001: Nadkarni P; Chen R; Brandt C
UMLS concept indexing for production databases: a feasibility study.
Journal of the American Medical Informatics Association : JAMIA 2001;8(1):80-91.
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2001: Miller P L; Nadkarni P; Singer M; Marenco L; Hines M; Shepherd G
Integration of multidisciplinary sensory data: a pilot model of the human brain project approach.
Journal of the American Medical Informatics Association : JAMIA 2001;8(1):34-48.
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2001: Nadkarni P M; Marenco L
Easing the transition between attribute-value databases and conventional databases for scientific data.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():483-7.
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2001: Fernando S K; Brandt C; Nadkarni P
Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():174-8.
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2000: Brandt C A; Nadkarni P; Marenco L; Karras B T; Lu C; Schacter L; Fisk J M; Miller P L
Reengineering a database for clinical trials management: lessons for system architects.
Controlled clinical trials 2000;21(5):440-61.
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2000: Chen R S; Nadkarni P; Marenco L; Levin F; Erdos J; Miller P L
Exploring performance issues for a clinical database organized using an entity-attribute-value representation.
Journal of the American Medical Informatics Association : JAMIA 2000;7(5):475-87.
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2000: Nadkarni P M
Clinical patient record systems architecture: an overview.
Journal of postgraduate medicine 2000;46(3):199-204.
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2000: Miller P L; Brandt C; Cheung K; Mattie M; Nadkarni P; Shiffman R N
The Yale Center for Medical Informatics: clinical, neuro- and genomic informatics.
M.D. computing : computers in medical practice 2000;17(4):29-32.
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2000: Nadkarni P M; Brandt C M; Marenco L
WebEAV: automatic metadata-driven generation of web interfaces to entity-attribute-value databases.
Journal of the American Medical Informatics Association : JAMIA 2000;7(4):343-56.
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2000: Chen R S; Nadkarni P M; Levin F L; Miller P L; Erdos J; Rosenheck R A
Using a computer database to monitor compliance with pharmacotherapeutic guidelines for schizophrenia.
Psychiatric services (Washington, D.C.) 2000;51(6):791-4.
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2000: Nadkarni P M
Information retrieval in medicine: overview and applications.
Journal of postgraduate medicine 2000;46(2):116-22.
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2000: Stein H D; Nadkarni P; Erdos J; Miller P L
Exploring the degree of concordance of coded and textual data in answering clinical queries from a clinical data repository.
Journal of the American Medical Informatics Association : JAMIA 2000;7(1):42-54.
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2000: Skoufos E; Marenco L; Nadkarni P M; Miller P L; Shepherd G M
Olfactory receptor database: a sensory chemoreceptor resource.
Nucleic acids research 2000;28(1):341-3.
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1999: Nadkarni P M; Marenco L; Chen R; Skoufos E; Shepherd G; Miller P
Organization of heterogeneous scientific data using the EAV/CR representation.
Journal of the American Medical Informatics Association : JAMIA 1999;6(6):478-93.
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1999: Skoufos E; Healy M D; Singer M S; Nadkarni P M; Miller P L; Shepherd G M
Olfactory Receptor Database: a database of the largest eukaryotic gene family.
Nucleic acids research 1999;27(1):343-5.
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1999: Marenco L; Nadkarni P; Skoufos E; Shepherd G; Miller P
Neuronal database integration: the Senselab EAV data model.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():102-6.
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1998: Nadkarni P M
CHRONOMERGE: an application for the merging and display of multiple time-stamped data streams.
Computers and biomedical research, an international journal 1998;31(6):451-64.
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1998: Shepherd G M; Mirsky J S; Healy M D; Singer M S; Skoufos E; Hines M S; Nadkarni P M; Miller P L
The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data.
Trends in neurosciences 1998;21(11):460-8.
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1998: Nadkarni P M; Brandt C
Data extraction and ad hoc query of an entity-attribute-value database.
Journal of the American Medical Informatics Association : JAMIA 1998;5(6):511-27.
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1998: Mirsky J S; Nadkarni P M; Healy M D; Miller P L; Shepherd G M
Database tools for integrating and searching membrane property data correlated with neuronal morphology.
Journal of neuroscience methods 1998;82(1):105-21.
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1998: Nadkarni P M; Brandt C; Frawley S; Sayward F G; Einbinder R; Zelterman D; Schacter L; Miller P L
Managing attribute--value clinical trials data using the ACT/DB client-server database system.
Journal of the American Medical Informatics Association : JAMIA 1998;5(2):139-51.
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1998: Cheung K H; Nadkarni P; Miller P; Shin D G
Automatic query mapping among genomic databases: a pilot exploration.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():942-6.
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1998: Cheung K H; Nadkarni P M; Shin D G
A metadata approach to query interoperation between molecular biology databases.
Bioinformatics (Oxford, England) 1998;14(6):486-97.
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1998: Nadkarni P
Mapmerge: merge genomic maps.
Bioinformatics (Oxford, England) 1998;14(4):310-6.
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1997: Nadkarni P M
Concept locator: a client-server application for retrieval of UMLS metathesaurus concepts through complex boolean query.
Computers and biomedical research, an international journal 1997;30(4):323-36.
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1997: Healy M D; Smith J E; Singer M S; Nadkarni P M; Skoufos E; Miller P L; Shepherd G M
Olfactory receptor database (ORDB): a resource for sharing and analyzing published and unpublished data.
Chemical senses 1997;22(3):321-6.
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1997: Nadkarni P M
QAV: querying entity-attribute-value metadata in a biomedical database.
Computer methods and programs in biomedicine 1997;53(2):93-103.
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1997: Nadkarni P M
Mapdiff: determining differences between two genomic maps.
Computer applications in the biosciences : CABIOS 1997;13(3):217-25.
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1996: Peterson B E; Healy M D; Nadkarni P M; Miller P L; Shepherd G M
ModelDB: an environment for running and storing computational models and their results applied to neuroscience.
Journal of the American Medical Informatics Association : JAMIA 1996;3(6):389-98.
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1996: Cheung K H; Nadkarni P; Silverstein S; Kidd J R; Pakstis A J; Miller P; Kidd K K
PhenoDB: an integrated client/server database for linkage and population genetics.
Computers and biomedical research, an international journal 1996;29(4):327-37.
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1996: Nadkarni P M; Banks A; Montgomery K; LeBlanc-Stracewski J; Miller P; Krauter K
CONTIG EXPLORER: interactive marker-content map assembly.
Genomics 1996;31(3):301-10.
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1996: Nadkarni P; Cheung K H; Castiglione C; Miller P; Kidd K
DNA workbench: a database package to manage regional physical mapping.
Journal of computational biology : a journal of computational molecular cell biology 1996;3(2):319-29.
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1995: Nadkarni P M
Management of evolving map data: data structures and algorithms based on the framework map.
Genomics 1995;30(3):565-73.
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1995: Nadkarni P M; Cheung K H
SQLGEN: a framework for rapid client-server database application development.
Computers and biomedical research, an international journal 1995;28(6):479-99.
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1995: Miller P L; Nadkarni P M; Kidd K K; Cheung K; Ward D C; Banks A; Bray-Ward P; Cupelli L; Herdman V; Marondel I; Montgomery K; Renault B; Yoon S J; Krauter K S; Kucherlapati R
Internet-based support for bioscience research: a collaborative genome center for human chromosome 12.
Journal of the American Medical Informatics Association : JAMIA 1995;2(6):351-64.
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1995: Nadkarni P M; Bray-Ward P
CEPH viewer: a client-server database to browse and manipulate CEPH physical mapping and linkage data.
Genomics 1995;25(1):318-20.
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1995: Miller P L; Nadkarni P M; Kucherlapati R; Krauter K S; Kidd K K; Ward D C; Shepherd G M; Berkowicz D
Network-based informatics support of research collaborations in the Human Genome Project and the Human Brain Project.
Medinfo. MEDINFO 1995;8 Pt 2():1541-4.
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1994: Nadkarni P M; Reeders S T; Zhou J
A modification of the ALIGN program to assist visual interpretation of mutated sequences.
Computer applications in the biosciences : CABIOS 1994;10(3):361-2.
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1994: Nadkarni P M
GDBDICT: a program to extract GDB schema information into a relational database.
Genomics 1994;19(1):185-6.
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1992: Miller P L; Nadkarni P M; Pearson W R
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison.
Computer applications in the biosciences : CABIOS 1992;8(2):167-75.
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1992: Miller P L; Nadkarni P M; Bercovitz P A
Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis.
Computer applications in the biosciences : CABIOS 1992;8(2):141-7.
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1991: Miller P L; Nadkarni P; Gelernter J E; Carriero N; Pakstis A J; Kidd K K
Parallelizing genetic linkage analysis: a case study for applying parallel computation in molecular biology.
Computers and biomedical research, an international journal 1991;24(3):234-48.
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1991: Miller P L; Nadkarni P M; Carriero N M
Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm.
Computer applications in the biosciences : CABIOS 1991;7(1):71-8.
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