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Shivashankar Nagaraj

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TOP 3
Shivashankar H Nagaraj; Akhilesh Pandey; Antonio Reverter; Nirujogi R Sekhar; Rakesh Sharma; Nicholas M Andronicos; Michelle L Colgrave; H C Harsha; Peter Hunt; Michael S Lees; Moira Menzies; Aaron B Ingham
Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep.
Nadia De Jager; Nicholas J Hudson; Antonio Reverter; Yong-Hong Wang; Shivashankar H Nagaraj; Linda M Cafe; Paul L Greenwood; Ross T Barnard; Kritaya P Kongsuwan; Brian P Dalrymple
Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.
Nicholas J Hudson; Shivashankar H Nagaraj; Brian P Dalrymple; Yong-Sheng Ding; Quan Gu; Antonio Reverter
Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins.

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All Publications

2012: Shivashankar H Nagaraj; Akhilesh Pandey; Antonio Reverter; Nirujogi R Sekhar; Rakesh Sharma; Nicholas M Andronicos; Michelle L Colgrave; H C Harsha; Peter Hunt; Michael S Lees; Moira Menzies; Aaron B Ingham
Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep.
Journal of proteomics 2012;75(7):2141-52.
2011: Nadia De Jager; Nicholas J Hudson; Antonio Reverter; Yong-Hong Wang; Shivashankar H Nagaraj; Linda M Cafe; Paul L Greenwood; Ross T Barnard; Kritaya P Kongsuwan; Brian P Dalrymple
Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.
Physiological genomics 2011;43(9):467-78.
2011: Nicholas J Hudson; Shivashankar H Nagaraj; Brian P Dalrymple; Yong-Sheng Ding; Quan Gu; Antonio Reverter
Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins.
PloS one 2011;6(9):e25457.
2011: Shivashankar H Nagaraj; Antonio Reverter
A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer.
BMC systems biology 2011;5():35.
2011: Quan Gu; Shivashankar H Nagaraj; Nicholas J Hudson; Brian P Dalrymple; Antonio Reverter
Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle.
BMC genomics 2011;12():23.
2010: Marina R S Fortes; Antonio Reverter; Yuandan Zhang; Eliza Collis; Shivashankar H Nagaraj; Nick N Jonsson; Kishore C Prayaga; Wes Barris; Rachel J Hawken
Association weight matrix for the genetic dissection of puberty in beef cattle.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(31):13642-7.
2010: Antonio Reverter; Nicholas J Hudson; Shivashankar H Nagaraj; Miguel Pérez-Enciso; Brian P Dalrymple
Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.
Bioinformatics (Oxford, England) 2010;26(7):896-904.
2010: Shivashankar H Nagaraj; Aaron B Ingham; Antonio Reverter
The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome.
BMC genomics 2010;11 Suppl 4():S23.
2009: Jason Mulvenna; Brett Hamilton; Shivashankar H Nagaraj; Danielle Smyth; Alex Loukas; Jeffrey J Gorman
Proteomics analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum.
Molecular & cellular proteomics : MCP 2009;8(1):109-21.
2008: Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Tim Williams; Shivashankar H Nagaraj; María José Nueda; Montserrat Robles; Manuel Talón; Joaquín Dopazo; Ana Conesa
High-throughput functional annotation and data mining with the Blast2GO suite.
Nucleic acids research 2008;36(10):3420-35.
2008: Shivashankar H Nagaraj; Robin Gasser; Shoba Ranganathan
Needles in the EST haystack: large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs).
PLoS neglected tropical diseases 2008;2(9):e301.
2008: Shivashankar H Nagaraj; Robin Gasser; Alasdair J Nisbet; Shoba Ranganathan
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.
BMC bioinformatics 2008;9 Suppl 1():S10.
2008: Bennett J D Datu; Robin Gasser; Shivashankar H Nagaraj; Eng K Ong; Peter O'Donoghue; Russell Leigh McInnes; Shoba Ranganathan; Alex Loukas
Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva.
PLoS neglected tropical diseases 2008;2(1):e130.
2008: Bronwyn E Campbell; Shivashankar H Nagaraj; Min Hu; Weiwei Zhong; Paul W Sternberg; Eng K Ong; Alex Loukas; Shoba Ranganathan; Ian Beveridge; Russell Leigh McInnes; Gareth W Hutchinson; Robin Gasser
Gender-enriched transcripts in Haemonchus contortus--predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans.
International journal for parasitology 2008;38(1):65-83.
2007: Shivashankar H Nagaraj; Nandan Deshpande; Robin Gasser; Shoba Ranganathan
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
Nucleic acids research 2007;35(Web Server issue):W143-7.
2007: Shoba Ranganathan; Shivashankar H Nagaraj; Min Hu; Christina Strube; Thomas Schnieder; Robin Gasser
A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus.
BMC genomics 2007;8():311.
2007: Shivashankar H Nagaraj; Robin Gasser; Shoba Ranganathan
A hitchhiker's guide to expressed sequence tag (EST) analysis.
Briefings in bioinformatics 2007;8(1):6-21.