FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Yuji Nagata

Research Profile

Chemicals & Drugs

Concepts & Ideas

Living Beings

Phenomena

Environmental Biodegradation

Procedures

Genes & Molecular Sequences

Physiology

Gene Expression Regulation, Bacterial

Co-author Network

Publications

TOP 3
Masahiko Okai; Masataka Tsuda; Lica Fabiana Imai; Tomoko Mase; Ryota Moriuchi; Koji Nagata; Yuji Nagata; Jun Ohtsuka; Masaru Tanokura
Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
M Tabata; Masataka Tsuda; S Ohhata; Yoshiyuki Ohtsubo; Yuji Nagata
Complete Genome Sequence of the γ-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1.
Hirokazu Yano; Hiroyuki Genka; Yuji Nagata; Yoshiyuki Ohtsubo; Eva M Top; Masataka Tsuda
Cointegrate-resolution of toluene-catabolic transposon Tn4651: determination of crossover site and the segment required for full resolution activity.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Yuji Nagata (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2013: Masahiko Okai; Masataka Tsuda; Lica Fabiana Imai; Tomoko Mase; Ryota Moriuchi; Koji Nagata; Yuji Nagata; Jun Ohtsuka; Masaru Tanokura
Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
Journal of bacteriology 2013;195(11):2642-51.
2013: M Tabata; Masataka Tsuda; S Ohhata; Yoshiyuki Ohtsubo; Yuji Nagata
Complete Genome Sequence of the γ-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1.
Genome announcements 2013;1(3):.
2013: Hirokazu Yano; Hiroyuki Genka; Yuji Nagata; Yoshiyuki Ohtsubo; Eva M Top; Masataka Tsuda
Cointegrate-resolution of toluene-catabolic transposon Tn4651: determination of crossover site and the segment required for full resolution activity.
Plasmid 2013;69(1):24-35.
2012: Yoshiyuki Ohtsubo; Fumito Maruyama; Hisayuki Mitsui; Yuji Nagata; Masataka Tsuda
Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.
Journal of bacteriology 2012;194(24):6970-1.
2012: Masatoshi Miyakoshi; Yuji Nagata; Hideaki Nojiri; Moriya Ohkuma; Fumiya Sai; Masaki Shintani; Tsuguno Terabayashi; Kei Inoue; Masataka Tsuda
ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids.
Environmental microbiology 2012;14(11):2946-59.
2012: Yoshiyuki Ohtsubo; Satomi Atobe; Satoshi Hirokawa; Yoko Ishibashi; Hideaki Naganawa; Yuji Nagata; Masataka Tsuda
Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element.
Journal of bacteriology 2012;194(16):4237-48.
2012: Tomoko Mase; Yuji Nagata; Jun Ohtsuka; Masahiko Okai; Fabiana Lica Imai; Hideya Yabuki; Masaru Tanokura
Crystallization and preliminary X-ray analysis of the haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58.
Acta crystallographica. Section F, Structural biology and crystallization communications 2012;68(Pt 6):652-4.
2012: Akane Kimura; Yuji Nagata; Yoshiyuki Ohtsubo; Satoshi Yuhara; Masataka Tsuda
Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation.
Microbiology (Reading, England) 2012;158(Pt 5):1284-93.
2012: Eri Nishiyama; Yoshiyuki Ohtsubo; Yuji Nagata; Yasuhiro Yamamoto; Masataka Tsuda
Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil.
FEMS microbiology letters 2012;330(1):46-55.
2011: Yuji Nagata; Shunsuke Natsui; A Oguchi; Yoshiyuki Ohtsubo; Akiho Ankai; Ryo Endo; Nobuyuki Fujita; Shigehiro Fukui; Natsuko Ichikawa; Masataka Tsuda
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium.
Enzyme and microbial technology 2011;49(6-7):499-508.
2011: Radka Chaloupkova; Yuji Nagata; Zbynek Prokop; Yukari Sato; Jiri Damborsky
Stereoselectivity and conformational stability of haloalkane dehalogenase DbjA from Bradyrhizobium japonicum USDA110: the effect of pH and temperature.
The FEBS journal 2011;278(15):2728-38.
2011: Khomaini Hasan; Andrea Fortova; Tana Koudelakova; Radka Chaloupkova; Mayuko Ishitsuka; Yuji Nagata; Jiri Damborsky; Zbynek Prokop
Biochemical characteristics of the novel haloalkane dehalogenase DatA, isolated from the plant pathogen Agrobacterium tumefaciens C58.
Applied and environmental microbiology 2011;77(5):1881-4.
2011: Michiro Tabata; Ryo Endo; Michihiro Ito; Yoshiyuki Ohtsubo; Ashwani Kumar; Masataka Tsuda; Yuji Nagata
The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids.
Bioscience, biotechnology, and biochemistry 2011;75(3):466-72.
2010: Yuji Nagata; Yoshiyuki Ohtsubo; Ryo Endo; Natsuko Ichikawa; Akiho Ankai; Akio Oguchi; Shigehiro Fukui; Nobuyuki Fujita; Masataka Tsuda
Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.
Journal of bacteriology 2010;192(21):5852-3.
2010: Masahiko Okai; Keiko Kubota; Masao Fukuda; Yuji Nagata; Koji Nagata; Masaru Tanokura
Crystal structure of γ-hexachlorocyclohexane Dehydrochlorinase LinA from Sphingobium japonicum UT26.
Journal of molecular biology 2010;403(2):260-9.
2010: Hirokazu Yano; Masatoshi Miyakoshi; Kenshiro Ohshima; Michiro Tabata; Yuji Nagata; Masahira Hattori; Masataka Tsuda
Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids.
Journal of bacteriology 2010;192(17):4337-47.
2010: Eri Nishiyama; Yoshiyuki Ohtsubo; Yuji Nagata; Masataka Tsuda
Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology.
Environmental microbiology 2010;12(9):2539-58.
2010: Zbynek Prokop; Yukari Sato; Brezovsky Jan; Tomas Mozga; Radka Chaloupkova; Tana Koudelakova; Petr Jerabek; Veronika Stepankova; Ryo Natsume; Jan G E van Leeuwen; Dick B Janssen; Jan Florian; Yuji Nagata; Toshiya Senda; Jiri Damborsky
Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering.
Angewandte Chemie (International ed. in English) 2010;49(35):6111-5.
2009: Martina Pavlova; Martin Klvana; Zbynek Prokop; Radka Chaloupkova; Pavel Banas; Michal Otyepka; Rebecca C Wade; Masataka Tsuda; Yuji Nagata; Jiri Damborsky
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.
Nature chemical biology 2009;5(10):727-33.
2009: Masahiko Okai; Keiko Kubota; Masao Fukuda; Yuji Nagata; Koji Nagata; Masaru Tanokura
Crystallization and preliminary X-ray analysis of gamma-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26.
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 8):822-4.
2008: Ryo Miyazaki; Yoshiyuki Ohtsubo; Yuji Nagata; Masataka Tsuda
Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifier in conjugative transfer.
Journal of bacteriology 2008;190(19):6281-9.
2008: Satoshi Yuhara; Harunobu Komatsu; Hiroyuki Goto; Yoshiyuki Ohtsubo; Yuji Nagata; Masataka Tsuda
Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans.
Microbiology (Reading, England) 2008;154(Pt 6):1763-74.
2008: Genki Fuchu; Yoshiyuki Ohtsubo; Michihiro Ito; Ryo Miyazaki; Akira Ono; Yuji Nagata; Masataka Tsuda
Insertion sequence-based cassette PCR: cultivation-independent isolation of gamma-hexachlorocyclohexane-degrading genes from soil DNA.
Applied microbiology and biotechnology 2008;79(4):627-32.
2008: Yoshiyuki Ohtsubo; Wakako Ikeda-Ohtsubo; Yuji Nagata; Masataka Tsuda
GenomeMatcher: a graphical user interface for DNA sequence comparison.
BMC bioinformatics 2008;9():376.
2007: Michihiro Ito; Zbynek Prokop; Martin Klvana; Yoshiyuki Otsubo; Masataka Tsuda; Jirí Damborský; Yuji Nagata
Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.
Archives of microbiology 2007;188(4):313-25.
2007: Yuji Nagata; Ryo Endo; Michihiro Ito; Yoshiyuki Ohtsubo; Masataka Tsuda
Aerobic degradation of lindane (gamma-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.
Applied microbiology and biotechnology 2007;76(4):741-52.
2007: Hirokazu Yano; Christine E Garruto; Masahiro Sota; Yoshiyuki Ohtsubo; Yuji Nagata; Gerben J Zylstra; Peter A Williams; Masataka Tsuda
Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements.
Journal of molecular biology 2007;369(1):11-26.
2007: Ryo Endo; Yoshiyuki Ohtsubo; Masataka Tsuda; Yuji Nagata
Identification and characterization of genes encoding a putative ABC-type transporter essential for utilization of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.
Journal of bacteriology 2007;189(10):3712-20.
2007: Yukari Sato; Ryo Natsume; Masataka Tsuda; Jiri Damborsky; Yuji Nagata; Toshiya Senda
Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 4):294-6.
2007: Marta Monincová; Zbynek Prokop; Jitka Vévodová; Yuji Nagata; Jiri Damborsky
Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry.
Applied and environmental microbiology 2007;73(6):2005-8.
2007: Akira Ono; Ryo Miyazaki; Masahiro Sota; Yoshiyuki Ohtsubo; Yuji Nagata; Masataka Tsuda
Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches.
Applied microbiology and biotechnology 2007;74(2):501-10.
2007: Martina Pavlová; Martin Klvana; Andrea Jesenská; Zbynek Prokop; Hana Konecná; Takashi Sato; Masataka Tsuda; Yuji Nagata; Jirí Damborský
The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution.
Journal of structural biology 2007;157(2):384-92.
2006: Ryo Miyazaki; Yukari Sato; Michihiro Ito; Yoshiyuki Ohtsubo; Yuji Nagata; Masataka Tsuda
Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.
Applied and environmental microbiology 2006;72(11):6923-33.
2006: Yoshiyuki Ohtsubo; Hiroyuki Goto; Yuji Nagata; Toshiaki Kudo; Masataka Tsuda
Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102.
Molecular microbiology 2006;60(6):1563-75.
2006: Ryo Endo; Yoshiyuki Ohtsubo; Masataka Tsuda; Yuji Nagata
Growth inhibition by metabolites of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.
Bioscience, biotechnology, and biochemistry 2006;70(4):1029-32.
2006: Yuji Nagata; Mayuko Kamakura; Ryo Endo; Ryo Miyazaki; Yoshiyuki Ohtsubo; Masataka Tsuda
Distribution of gamma-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26.
FEMS microbiology letters 2006;256(1):112-8.
2006: Takashi Nakamura; Marcel Zámocký; Zbynek Zdráhal; Radka Chaloupková; Marta Monincová; Zbynek Prokop; Yuji Nagata; Jirí Damborský
Expression of glycosylated haloalkane dehalogenase LinB in Pichia pastoris.
Protein expression and purification 2006;46(1):85-91.
2006: Masahiro Sota; Hirokazu Yano; Yuji Nagata; Yoshiyuki Ohtsubo; Hiroyuki Genka; Hisashi Anbutsu; Haruhiko Kawasaki; Masataka Tsuda
Functional analysis of unique class II insertion sequence IS1071.
Applied and environmental microbiology 2006;72(1):291-7.
2005: Andrea Jesenská; Martina Pavlová; Michal Strouhal; Radka Chaloupková; Iva Tesínská; Marta Monincová; Zbynek Prokop; Milan Bartos; Ivo Pavlík; Ivan Rychlík; Petra Möbius; Yuji Nagata; Jiri Damborsky
Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases.
Applied and environmental microbiology 2005;71(11):6736-45.
2005: Yukari Sato; Marta Monincová; Radka Chaloupková; Zbynek Prokop; Yoshiyuki Ohtsubo; Kiwamu Minamisawa; Masataka Tsuda; Jiri Damborsky; Yuji Nagata
Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities.
Applied and environmental microbiology 2005;71(8):4372-9.
2005: Yuji Nagata; Muneaki Matsuda; Harunobu Komatsu; Yoshiyuki Imura; Hiroyuki Sawada; Yoshiyuki Ohtsubo; Masataka Tsuda
Organization and localization of the dnaA and dnaK gene regions on the multichromosomal genome of Burkholderia multivorans ATCC 17616.
Journal of bioscience and bioengineering 2005;99(6):603-10.
2005: Yuji Nagata; Zbynek Prokop; Yukari Sato; Petr Jerabek; Ashwani Kumar; Yoshiyuki Ohtsubo; Masataka Tsuda; Jiri Damborsky
Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26.
Applied and environmental microbiology 2005;71(4):2183-5.
2005: Yoshiyuki Ohtsubo; Hiroyuki Genka; Harunobu Komatsu; Yuji Nagata; Masataka Tsuda
High-temperature-induced transposition of insertion elements in burkholderia multivorans ATCC 17616.
Applied and environmental microbiology 2005;71(4):1822-8.
2005: Jan Kmunícek; Kamila Hynková; Tomás Jedlicka; Yuji Nagata; Ana Negri; Federico Gago; Rebecca C Wade; Jirí Damborský
Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.
Biochemistry 2005;44(9):3390-401.
2005: Ryo Endo; Mayuko Kamakura; Keisuke Miyauchi; Masao Fukuda; Yoshiyuki Ohtsubo; Masataka Tsuda; Yuji Nagata
Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26.
Journal of bacteriology 2005;187(3):847-53.
2004: Yoshiyuki Ohtsubo; Toshiaki Kudo; Masataka Tsuda; Yuji Nagata
Strategies for bioremediation of polychlorinated biphenyls.
Applied microbiology and biotechnology 2004;65(3):250-8.
2004: Aaron J Oakley; Martin Klvana; Michal Otyepka; Yuji Nagata; Matthew C J Wilce; Jirí Damborský
Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.
Biochemistry 2004;43(4):870-8.
2003: Radka Chaloupková; Jana Sýkorová; Zbynek Prokop; Andrea Jesenská; Marta Monincová; Martina Pavlová; Masataka Tsuda; Yuji Nagata; Jirí Damborský
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel.
The Journal of biological chemistry 2003;278(52):52622-8.
2003: Zbynek Prokop; Marta Monincová; Radka Chaloupková; Martin Klvana; Yuji Nagata; Dick B Janssen; Jirí Damborský
Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.
The Journal of biological chemistry 2003;278(46):45094-100.
2003: Victor A Streltsov; Zbynek Prokop; Jirí Damborský; Yuji Nagata; Aaron Oakley; Matthew C J Wilce
Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates.
Biochemistry 2003;42(34):10104-12.
2003: Harunobu Komatsu; Yoshiyuki Imura; Akira Ohori; Yuji Nagata; Masataka Tsuda
Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616.
Journal of bacteriology 2003;185(11):3333-43.
2003: Yuji Nagata; Zbynek Prokop; Sona Marvanová; Jana Sýkorová; Marta Monincová; Masataka Tsuda; Jirí Damborský
Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB.
Applied and environmental microbiology 2003;69(4):2349-55.
2003: Yoshiyuki Ohtsubo; Minoru Shimura; Mina Delawary; Kazuhide Kimbara; Masamichi Takagi; Toshiaki Kudo; Akinori Ohta; Yuji Nagata
Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: promoter implantation by homologous recombination.
Applied and environmental microbiology 2003;69(1):146-53.
2002: Michal Bohác; Yuji Nagata; Zbynek Prokop; Martin Prokop; Marta Monincová; Masataka Tsuda; Jaroslav Koca; Jirí Damborský
Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis.
Biochemistry 2002;41(48):14272-80.
2002: Hiroyuki Genka; Yuji Nagata; Masataka Tsuda
Site-specific recombination system encoded by toluene catabolic transposon Tn4651.
Journal of bacteriology 2002;184(17):4757-66.
2002: Aaron J Oakley; Zbynek Prokop; Michal Bohác; Jan Kmunícek; Tomás Jedlicka; Marta Monincová; Ivana Kutá-Smatanová; Yuji Nagata; Jirí Damborský; Matthew C J Wilce
Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition.
Biochemistry 2002;41(15):4847-55.
2002: Keisuke Miyauchi; Haeng-Seog Lee; Masao Fukuda; Masamichi Takagi; Yuji Nagata
Cloning and characterization of linR, involved in regulation of the downstream pathway for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26.
Applied and environmental microbiology 2002;68(4):1803-7.
2002: Haeng-Seog Lee; Keisuke Miyauchi; Yuji Nagata; Ryouichi Fukuda; Shin-ichi Sasagawa; Hideki Endoh; Shigeaki Kato; Hiroyuki Horiuchi; Masamichi Takagi; Akinori Ohta
Employment of the human estrogen receptor beta ligand-binding domain and co-activator SRC1 nuclear receptor-binding domain for the construction of a yeast two-hybrid detection system for endocrine disrupters.
Journal of biochemistry 2002;131(3):399-405.
2001: Jirí Damborský; E Rorije; Andrea Jesenská; Yuji Nagata; G Klopman; Willie Peijnenburg
Structure-specificity relationships for haloalkane dehalogenases.
Environmental toxicology and chemistry / SETAC 2001;20(12):2681-9.
2001: Yuji Nagata; K Mori; M Takagi; A G Murzin; J Damborský
Identification of protein fold and catalytic residues of gamma-hexachlorocyclohexane dehydrochlorinase LinA.
Proteins 2001;45(4):471-7.
2001: Yoshiyuki Ohtsubo; Mina Delawary; Kazuhide Kimbara; Masamichi Takagi; Akinori Ohta; Yuji Nagata
BphS, a key transcriptional regulator of bph genes involved in polychlorinated biphenyl/biphenyl degradation in Pseudomonas sp. KKS102.
The Journal of biological chemistry 2001;276(39):36146-54.
2001: Setsu Yamagami; Toshiya Iida; Yuji Nagata; Akinori Ohta; Masamichi Takagi
Isolation and characterization of acetoacetyl-CoA thiolase gene essential for n-decane assimilation in yeast Yarrowia lipolytica.
Biochemical and biophysical research communications 2001;282(3):832-8.
2001: Lukás Trantírek; Kamila Hynková; Yuji Nagata; A Murzin; Alena Ansorgová; Vladimír Sklenár; Jirí Damborský
Reaction mechanism and stereochemistry of gamma-hexachlorocyclohexane dehydrochlorinase LinA.
The Journal of biological chemistry 2001;276(11):7734-40.
2001: S Marvanová; Yuji Nagata; Michaela Wimmerova; Jana Sýkorová; Kamila Hynková; Jirí Damborský
Biochemical characterization of broad-specificity enzymes using multivariate experimental design and a colorimetric microplate assay: characterization of the haloalkane dehalogenase mutants.
Journal of microbiological methods 2001;44(2):149-57.
2000: J Marek; Jitka Vévodová; I K Smatanová; Yuji Nagata; L A Svensson; J Newman; Masamichi Takagi; Jirí Damborský
Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.
Biochemistry 2000;39(46):14082-6.
2000: Zdenek Glatz; M V Marini; Michaela Wimmerova; Jirí Damborský; Yuji Nagata
Determination of haloalkane dehalogenase activity by capillary zone electrophoresis.
Journal of chromatography. A 2000;895(1-2):219-25.
2000: Yoshiyuki Ohtsubo; Yuji Nagata; Kazuhide Kimbara; Masamichi Takagi; Akinori Ohta
Expression of the bph genes involved in biphenyl/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid.
Gene 2000;256(1-2):223-8.
2000: S Sunahara; Kozo Nakamura; K Nakao; Y Gondo; Yuji Nagata; M Katsuki
The oocyte-specific methylated region of the U2afbp-rs/U2af1-rs1 gene is dispensable for its imprinted methylation.
Biochemical and biophysical research communications 2000;268(2):590-5.
1999: Yuji Nagata; Kamila Hynková; Jirí Damborský; Masamichi Takagi
Construction and characterization of histidine-tagged haloalkane dehalogenase (LinB) of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.
Protein expression and purification 1999;17(2):299-304.
1999: Keisuke Miyauchi; Y Adachi; Yuji Nagata; Masamichi Takagi
Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis.
Journal of bacteriology 1999;181(21):6712-9.
1999: Yoshiyuki Ohtsubo; Keisuke Miyauchi; K Kanda; T Hatta; H Kiyohara; Toshiya Senda; Yuji Nagata; Y Mitsui; Masamichi Takagi
PcpA, which is involved in the degradation of pentachlorophenol in Sphingomonas chlorophenolica ATCC39723, is a novel type of ring-cleavage dioxygenase.
FEBS letters 1999;459(3):395-8.
1999: Yuji Nagata; Azusa Futamura; Keisuke Miyauchi; Masamichi Takagi
Two different types of dehalogenases, LinA and LinB, involved in gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26 are localized in the periplasmic space without molecular processing.
Journal of bacteriology 1999;181(17):5409-13.
1999: Yuji Nagata; H Homma; M Matsumoto; Kohzoh Imai
Stimulation of steroidogenic acute regulatory protein (StAR) gene expression by D-aspartate in rat Leydig cells.
FEBS letters 1999;454(3):317-20.
1999: I Smatanová; Yuji Nagata; L A Svensson; Masamichi Takagi; J Marek
Crystallization and preliminary X-ray diffraction analysis of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 6):1231-3.
1999: Kamila Hynková; Yuji Nagata; Masamichi Takagi; Jirí Damborský
Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.
FEBS letters 1999;446(1):177-81.
1999: Yuji Nagata; H Homma; J A Lee; Kohzoh Imai
D-Aspartate stimulation of testosterone synthesis in rat Leydig cells.
FEBS letters 1999;444(2-3):160-4.
1998: Keisuke Miyauchi; S K Suh; Yuji Nagata; Masamichi Takagi
Cloning and sequencing of a 2,5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane by Sphingomonas paucimobilis.
Journal of bacteriology 1998;180(6):1354-9.
1997: Yuji Nagata; Keisuke Miyauchi; J Damborsky; K Manova; A Ansorgova; Masamichi Takagi
Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.
Applied and environmental microbiology 1997;63(9):3707-10.
1996: Yuji Nagata; Yorihiro Yamamoto; Etsuo Niki
Reaction of phosphatidylcholine hydroperoxide in human plasma: the role of peroxidase and lecithin:cholesterol acyltransferase.
Archives of biochemistry and biophysics 1996;329(1):24-30.
1995: Y Kikuchi; Yuji Nagata; Y Ohtsubo; T Koana; Masamichi Takagi
Pseudomonas fluorescens KKL101, a benzoic acid degrader in a mixed culture that degrades biphenyl and polychlorinated biphenyls.
Bioscience, biotechnology, and biochemistry 1995;59(12):2303-4.
1994: Mitsunori Fukuda; Y Yasukochi; Y Kikuchi; Yuji Nagata; K Kimbara; Hiroyuki Horiuchi; Masamichi Takagi; Kazuyoshi Yano
Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls.
Biochemical and biophysical research communications 1994;202(2):850-6.
1994: Y Kikuchi; Y Yasukochi; Yuji Nagata; Mitsunori Fukuda; Masamichi Takagi
Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102.
Journal of bacteriology 1994;176(14):4269-76.
1994: Yuji Nagata; R Ohtomo; Keisuke Miyauchi; Mitsunori Fukuda; Kazuyoshi Yano; Masamichi Takagi
Cloning and sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis.
Journal of bacteriology 1994;176(11):3117-25.
1994: Y Kikuchi; Yuji Nagata; M Hinata; K Kimbara; Mitsunori Fukuda; Kazuyoshi Yano; Masamichi Takagi
Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102.
Journal of bacteriology 1994;176(6):1689-94.
1993: Yuji Nagata; T Nariya; R Ohtomo; Mitsunori Fukuda; Kazuyoshi Yano; Masamichi Takagi
Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis.
Journal of bacteriology 1993;175(20):6403-10.
1993: Yorihiro Yamamoto; Yuji Nagata; Etsuo Niki; K Watanabe; S Yoshimura
Plasma glutathione peroxidase reduces phosphatidylcholine hydroperoxide.
Biochemical and biophysical research communications 1993;193(1):133-8.
1993: Yuji Nagata; R Imai; A Sakai; Mitsunori Fukuda; Kazuyoshi Yano; Masamichi Takagi
Isolation and characterization of Tn5-induced mutants of Pseudomonas paucimobilis UT26 defective in gamma-hexachlorocyclohexane dehydrochlorinase (LinA).
Bioscience, biotechnology, and biochemistry 1993;57(5):703-9.
1991: R Imai; Yuji Nagata; Mitsunori Fukuda; Masamichi Takagi; Kazuyoshi Yano
Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from gamma-hexachlorocyclohexane.
Journal of bacteriology 1991;173(21):6811-9.