FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Noriko Nakagawa

Research Profile

Living Beings

Procedures

Chemicals & Drugs

Genes & Molecular Sequences

Amino Acid Sequences

Concepts & Ideas

Physiology

DNA Repair

Phenomena

Hydrolysis

Co-author Network

Publications

TOP 3
Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
The role of the PHP domain associated with DNA polymerase X from Thermus thermophilus HB8 in base excision repair.
Shuhei Nakane; Noriko Nakagawa; Hirohito Ishikawa; Seiki Kuramitsu; Ryoji Masui
The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
Toshiko Tanaka; Akeo Shinkai; Kwang Kim; Seiki Kuramitsu; Ryoji Masui; Ryosuke Mega; Noriko Nakagawa
A non-cold-inducible cold shock protein homolog mainly contributes to translational control under optimal growth conditions.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Noriko Nakagawa (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2012: Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
The role of the PHP domain associated with DNA polymerase X from Thermus thermophilus HB8 in base excision repair.
DNA repair 2012;11(11):906-14.
2012: Shuhei Nakane; Noriko Nakagawa; Hirohito Ishikawa; Seiki Kuramitsu; Ryoji Masui
The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
Journal of molecular biology 2012;417(3):179-96.
2012: Toshiko Tanaka; Akeo Shinkai; Kwang Kim; Seiki Kuramitsu; Ryoji Masui; Ryosuke Mega; Noriko Nakagawa
A non-cold-inducible cold shock protein homolog mainly contributes to translational control under optimal growth conditions.
The FEBS journal 2012;279(6):1014-29.
2011: Rihito Morita; Noriko Nakagawa; Toshihiro Ohta; Hiromasa Ohyama; Akeo Shinkai; Yoshihiro Agari; Kenji Fukui; Hisahiro Hishinuma; Seiki Kuramitsu; Ryosuke Mega; Ryoji Masui
An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response.
Journal of biochemistry 2011;150(3):327-39.
2011: Fumiaki Tomoike; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
A single amino acid limits the substrate specificity of Thermus thermophilus uridine-cytidine kinase to cytidine.
Biochemistry 2011;50(21):4597-607.
2011: Ryuichi Asano; Hirohito Ishikawa; Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA.
Acta crystallographica. Section D, Biological crystallography 2011;67(Pt 3):149-55.
2011: Taisuke Wakamatsu; Kwang Kim; Yuri Uemura; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Role of RecJ-like protein with 5'-3' exonuclease activity in oligo(deoxy)nucleotide degradation.
The Journal of biological chemistry 2011;286(4):2807-16.
2010: Atsuhiro Shimada; Ryoji Masui; Noriko Nakagawa; Yoshio Takahata; Kwang Kim; Seiki Kuramitsu; Kenji Fukui
A novel single-stranded DNA-specific 3'-5' exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways.
Nucleic acids research 2010;38(17):5692-705.
2010: Ryosuke Mega; Miho Manzoku; Akeo Shinkai; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Very rapid induction of a cold shock protein by temperature downshift in Thermus thermophilus.
Biochemical and biophysical research communications 2010;399(3):336-40.
2010: Atsuhiro Shimada; Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii.
Proteins 2010;78(10):2399-402.
2010: Yuya Nishida; Hirohito Ishikawa; Seiki Baba; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii.
Proteins 2010;78(10):2395-8.
2010: Shankar Prasad Kanaujia; Jeyaraman Jeyakanthan; Noriko Nakagawa; Sathyaramya Balasubramaniam; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2010;66(Pt 7):821-33.
2010: Taisuke Wakamatsu; Yoshiaki Kitamura; Yutaro Kotera; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Structure of RecJ exonuclease defines its specificity for single-stranded DNA.
The Journal of biological chemistry 2010;285(13):9762-9.
2010: Jeyaraman Jeyakanthan; Subbiah Thamotharan; Santosh Panjikar; Yoshiaki Kitamura; Noriko Nakagawa; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama
Expression, purification and X-ray analysis of 1,3-propanediol dehydrogenase (Aq_1145) from Aquifex aeolicus VF5.
Acta crystallographica. Section F, Structural biology and crystallization communications 2010;66(Pt 2):184-6.
2010: Kavyashree Manjunath; Jeyaraman Jeyakanthan; Noriko Nakagawa; Akeo Shinkai; Masato Yoshimura; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of the putative SAICAR synthetase (PH0239) from Pyrococcus horikoshii OT3.
Acta crystallographica. Section F, Structural biology and crystallization communications 2010;66(Pt 2):180-3.
2010: Jeyaraman Jeyakanthan; Shankar Prasad Kanaujia; Yuya Nishida; Noriko Nakagawa; Surendran Praveen; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Free and ATP-bound structures of Ap4A hydrolase from Aquifex aeolicus V5.
Acta crystallographica. Section D, Biological crystallography 2010;66(Pt 2):116-24.
2010: Rihito Morita; Shuhei Nakane; Atsuhiro Shimada; Masao Inoue; Hitoshi Iino; Taisuke Wakamatsu; Kenji Fukui; Noriko Nakagawa; Ryoji Masui; Seiki Kuramitsu
Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems.
Journal of nucleic acids 2010;2010():179594.
2009: Fumiaki Tomoike; Taisuke Wakamatsu; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.
Proteins 2009;76(1):244-8.
2009: Ryosuke Mega; Naoyuki Kondo; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Two dNTP triphosphohydrolases from Pseudomonas aeruginosa possess diverse substrate specificities.
The FEBS journal 2009;276(12):3211-21.
2009: Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity.
Nucleic acids research 2009;37(6):2037-52.
2008: Kenji Fukui; Noriko Nakagawa; Yoshiaki Kitamura; Yuya Nishida; Ryoji Masui; Seiki Kuramitsu
Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression.
The Journal of biological chemistry 2008;283(48):33417-27.
2008: Rihito Morita; Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8.
Proteins 2008;73(1):259-64.
2008: Rihito Morita; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein.
Journal of biochemistry 2008;144(2):267-77.
2008: Hitoshi Iino; Hisashi Naitow; Yuki Nakamura; Noriko Nakagawa; Yoshihiro Agari; Mayumi Kanagawa; Akio Ebihara; Akeo Shinkai; Mitsuaki Sugahara; Masashi Miyano; Nobuo Kamiya; Shigeyuki Yokoyama; Ken Hirotsu; Seiki Kuramitsu
Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 6):487-91.
2008: Kenji Fukui; Masami Nishida; Noriko Nakagawa; Ryoji Masui; Seiki Kuramitsu
Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL.
The Journal of biological chemistry 2008;283(18):12136-45.
2008: Naoyuki Kondo; Takashi Nishikubo; Taisuke Wakamatsu; Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus.
Extremophiles : life under extreme conditions 2008;12(2):217-23.
2008: Taisuke Wakamatsu; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8.
Journal of bacteriology 2008;190(3):1108-17.
2007: Hiromichi Kosaka; Jun Hoseki; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.
Journal of molecular biology 2007;373(4):839-50.
2007: Shankar Prasad Kanaujia; Chellamuthu Vasuki Ranjani; Jeyaraman Jeyakanthan; Masami Nishida; Yoshiaki Kitamura; Seiki Baba; Akio Ebihara; Nobutaka Shimizu; Noriko Nakagawa; Akeo Shinkai; Masaki Yamamoto; Seiki Kuramitsu; Yoshitsugu Shiro; Kanagaraj Sekar; Shigeyuki Yokoyama
Preliminary X-ray crystallographic study of glucose dehydrogenase from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 5):446-8.
2007: Akeo Shinkai; Satoshi Kira; Noriko Nakagawa; Aiko Kashihara; Seiki Kuramitsu; Shigeyuki Yokoyama
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8.
Journal of bacteriology 2007;189(10):3891-901.
2007: Naoyuki Kondo; Noriko Nakagawa; Akio Ebihara; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Shigeyuki Yokoyama; Seiki Kuramitsu; Ryoji Masui
Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 2):230-9.
2007: Kenji Fukui; Yoshio Takahata; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry.
Nucleic acids research 2007;35(15):e100.
2006: Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily.
Journal of biochemistry 2006;140(4):535-42.
2005: Takashi Nishikubo; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon.
Journal of biotechnology 2005;120(4):341-6.
2005: Yoko Tanaka; Noriko Nakagawa; Seiki Kuramitsu; Shigeyuki Yokoyama; Ryoji Masui
Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative.
Journal of biochemistry 2005;138(3):263-75.
2005: Takushi Ooga; Sachiko Yoshiba; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Molecular mechanism of the Thermus thermophilus ADP-ribose pyrophosphatase from mutational and kinetic studies.
Biochemistry 2005;44(26):9320-9.
2005: Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.
The EMBO journal 2005;24(8):1523-36.
2004: Sachiko Yoshiba; Takushi Ooga; Noriko Nakagawa; Takehiko Shibata; Yorinao Inoue; Shigeyuki Yokoyama; Seiki Kuramitsu; Ryoji Masui
Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal.
The Journal of biological chemistry 2004;279(35):37163-74.
2004: Masaru Goto; Rie Omi; Noriko Nakagawa; Ikuko Miyahara; Ken Hirotsu
Crystal structures of CTP synthetase reveal ATP, UTP, and glutamine binding sites.
Structure (London, England : 1993) 2004;12(8):1413-23.
2004: Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Ligand-induced conformational changes and a reaction intermediate in branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8, as revealed by X-ray crystallography.
Journal of molecular biology 2004;337(4):1011-33.
2004: Rie Omi; Masaru Goto; Noriko Nakagawa; Ikuko Miyahara; Ken Hirotsu
Expression, purification and preliminary X-ray characterization of histidinol phosphate phosphatase.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 3):574-6.
2003: Shunsaku Takeishi; Noriko Nakagawa; Nobuko Maoka; Miho Kihara; Miki Moriguchi; Ryoji Masui; Seiki Kuramitsu
Crystallization and preliminary X-ray diffraction studies of nucleoside diphosphate kinase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1843-5.
2003: Sachiko Yoshiba; Noriko Nakagawa; Ryoji Masui; Takehiko Shibata; Yorinao Inoue; Shigeyuki Yokoyama; Seiki Kuramitsu
Overproduction, crystallization and preliminary diffraction data of ADP-ribose pyrophosphatase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1840-2.
2003: Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Coexpression, purification, crystallization and preliminary X-ray characterization of glycine decarboxylase (P-protein) of the glycine-cleavage system from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 3):554-7.
2003: Masaru Goto; Rie Omi; Jun Hoseki; Noriko Nakagawa; Ikuko Miyahara; Ken Hirotsu
Expression, purification and preliminary X-ray characterization of CTP synthetase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 3):551-3.
2002: Naoto Ohtani; Noriko Nakagawa; Jun Hoseki; Akio Ebihara; Shinya Satoh; Yoshihiro Agari; Shin-ichiro Kobayashi; Kazuko Agari; Nobuko Maoka; Ryoji Masui; Kunio Miki; Shigeyuki Yokoyama; Seiki Kuramitsu
[An exhaustive overproduction of bacterial proteins].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2002;47(8 Suppl):1009-13.
2000: R Kato; M Kataoka; T Mikawa; Ryoji Masui; Noriko Nakagawa; Hironari Kamikubo; Seiki Kuramitsu
Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation.
FEBS letters 2000;482(1-2):159-62.
2000: Atsushi Yamagata; Ryoji Masui; R Kato; Noriko Nakagawa; Hiroshi Ozaki; H Sawai; Seiki Kuramitsu; Keiichi Fukuyama
Interaction of UvrA and UvrB proteins with a fluorescent single-stranded DNA. Implication for slow conformational change upon interaction of UvrB with DNA.
The Journal of biological chemistry 2000;275(18):13235-42.
1999: Noriko Nakagawa; M Sugahara; Ryoji Masui; R Kato; Keiichi Fukuyama; Seiki Kuramitsu
Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
Journal of biochemistry 1999;126(6):986-90.
1999: A Shibata; Noriko Nakagawa; M Sugahara; Ryoji Masui; R Kato; Seiki Kuramitsu; Keiichi Fukuyama
Crystallization and preliminary X-ray diffraction studies of a DNA excision repair enzyme, UvrB, from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 3):704-5.
1997: Noriko Nakagawa; Ryoji Masui; R Kato; Seiki Kuramitsu
Domain structure of Thermus thermophilus UvrB protein. Similarity in domain structure to a helicase.
The Journal of biological chemistry 1997;272(36):22703-13.